Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2018	McCormick, R.F., Truong, S.K., Sreedasyam, A., Jenkins, J., Shu, S., Sims, D., Kennedy, M., Amirebrahimi, M., Weers, B.D., McKinley, B., et al. "The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization." The Plant Journal 93,2, 338-354+ (2018). [DOI: 10.1111/tpj.13781] DOI Google Scholar	Feedstocks
2018	McDaniel, E.A., Stuecker, T.N., Veluvolu, M., Gasch, A.P. & Lewis, J.A. "Independent mechanisms for acquired salt tolerance versus growth resumption induced by mild ethanol pretreatment in Saccharomyces cerevisiae." mSphere 3,6, (2018). [DOI: 10.1128/mSphere.00574-18] DOI Google Scholar	Conversion
2018	McKinley, B.A., Casto, A.L., Rooney, W.L. & Mullet, J.E. "Developmental dynamics of stem starch accumulation in Sorghum bicolor." Plant Direct 2,8, (2018). [DOI: 10.1002/pld3.74] DOI Google Scholar	Feedstocks
2018	McKinley, B.A., Olson, S.N., Ritter, K.B., Herb, D.W., Karlen, S.D., Lu, F., Ralph, J., Rooney, W.L. & Mullet, J.E. "Variation in energy sorghum hybrid TX08001 biomass composition and lignin chemistry during development under irrigated and non-irrigated field conditions." PLOS ONE 13,4, (2018). [DOI: 10.1371/journal.pone.0195863] DOI Google Scholar	Feedstocks
2018	Mellmer, M.A., Sanpitakseree, C., Demir, B., Bai, P., Ma, K., Neurock, M. & Dumesic, J.A. "Solvent-enabled control of reactivity for liquid-phase reactions of biomass-derived compounds." Nature Catalysis 1, 199-207+ (2018). [DOI: 10.1038/s41929-018-0027-3] DOI Google Scholar	Conversion
2018	Meyer, J.R., Waghmode, S.B., He, J., Gao, Y., Hoole, D., Sousa, L. da C., Balan, V. & Foston, M.B. "Isolation of lignin from Ammonia Fiber Expansion (AFEX) pretreated biorefinery waste." Biomass and Bioenergy 119, 446-455+ (2018). [DOI: 10.1016/j.biombioe.2018.09.017] DOI Google Scholar	Deconstruction
2018	Mokomele, T., Sousa, L. da C., Balan, V., van Rensburg, E., Dale, B.E. & Görgens, J.F. "Ethanol production potential from AFEX™ and steam-exploded sugarcane residues for sugarcane biorefineries." Biotechnology for Biofuels 11,1, 127+ (2018). [DOI: 10.1186/s13068-018-1130-z] DOI Google Scholar	Deconstruction
2018	Mokomele, T., Sousa, L. da C., Bals, B., Balan, V., Goosen, N., Dale, B.E. & Görgens, J.F. "Using steam explosion or AFEX™ to produce animal feeds and biofuel feedstocks in a biorefinery based on sugarcane residues." Biofuels, Bioproducts and Biorefining 12,6, 978-996+ (2018). [DOI: 10.1002/bbb.1927] DOI Google Scholar	Deconstruction
2018	Motagamwala, A.H., Won, W., Sener, C., Alonso, D.M., Maravelias, C.T. & Dumesic, J.A. "Toward biomass-derived renewable plastics: production of 2,5-furandicarboxylic acid from fructose." Science Advances 4, (2018). [DOI: 10.1126/sciadv.aap9722] DOI Google Scholar	Conversion
2018	Ng, R.T.L., Kurniawan, D., Wang, H., Mariska, B., Wu, W. & Maravelias, C.T. "Integrated framework for designing spatially explicit biofuel supply chains." Applied Energy 216, 116-131+ (2018). [DOI: 10.1016/j.apenergy.2018.02.077] DOI Google Scholar	Deconstruction
2018	Tsuji, Y., Takata, N., Sakamoto, S., Nakagawa-Izumi, A., Taniguchi, T., Ralph, J., Mitsuda, N. & Kajita, S. "Change in lignin structure, but not in lignin content, in transgenic poplar overexpressing the rice master regulator of secondary cell wall biosynthesis." Physiologia Plantarum 163,2, 170-182+ (2018). [DOI: 10.1111/ppl.12684] DOI Google Scholar	Feedstocks
2018	Nutting, J.E., Rafiee, M. & Stahl, S.S. "Tetramethylpiperidine N-Oxyl (TEMPO), phthalimide N-Oxyl (PINO), and related N-Oxyl species: electrochemical properties and their use in electrocatalytic reactions." Chemical Reviews 118,9, 4834-4885+ (2018). [DOI: 10.1021/acs.chemrev.7b00763] DOI Google Scholar	Deconstruction
2018	Ong, R.G., Shinde, S., Sousa, L. da C. & Sanford, G.R. "Pre-senescence harvest of switchgrass inhibits xylose utilization by engineered yeast." Frontiers in Energy Research 6, 52+ (2018). [DOI: 10.3389/fenrg.2018.00052] DOI Google Scholar	Deconstruction, Sustainability
2018	Opulente, D.A., Rollinson, E.J., Bernick-Roehr, C., Hulfachor, A.B., Rokas, A., Kurtzman, C.P. & Hittinger, C.T. "Factors driving metabolic diversity in the budding yeast subphylum." BMC Biology 16,1, 26+ (2018). [DOI: 10.1186/s12915-018-0498-3] DOI Google Scholar	Conversion
2018	Ostrom, N.E., Gandhi, H., Coplen, T.B., Toyoda, S., Böhlke, J.K., Brand, W.A., Casciotti, K.L., Dyckmans, J., Giesemann, A., Mohn, J., et al. "Preliminary assessment of stable nitrogen and oxygen isotopic composition of USGS51 and USGS52 nitrous oxide reference gases and perspectives on calibration needs." Rapid Communications in Mass Spectrometry 32,15, 1207-1214+ (2018). [DOI: 10.1002/rcm.8157] DOI Google Scholar	Deconstruction
2018	Pan, S. & Reed, J.L. "Advances in gap-filling genome-scale metabolic models and model-driven experiments lead to novel metabolic discoveries." Current Opinion in Biotechnology 51, 103-108+ (2018). [DOI: 10.1016/j.copbio.2017.12.012] DOI Google Scholar	Conversion
2018	Ramstein, G.P., Evans, J., Nandety, A., Saha, M.C., Brummer, C., Kaeppler, S.M., Buell, R. & Casler, M.D. "Candidate variants for additive and interactive effects on bioenergy traits in switchgrass (Panicum virgatum L.) identified by genome-wide association analyses." The Plant Genome 11,3, 180002+ (2018). [DOI: 10.3835/plantgenome2018.01.0002] DOI Google Scholar	Feedstocks
2018	Regner, M., Bartuce, A., Padmakshan, D., Ralph, J. & Karlen, S.D. "Reductive cleavage method for quantitation of monolignols and low‐abundance monolignol conjugates." ChemSusChem 11,10, 1600-1605+ (2018). [DOI: 10.1002/cssc.201800617] DOI Google Scholar	Feedstocks
2018	Regner, M., Bartuce, A., Padmakshan, D., Ralph, J. & Karlen, S.D. "Cover Profile: Reductive cleavage method for quantitation of monolignols and low‐abundance monolignol conjugates." ChemSusChem 11, 1580+ (2018). [DOI: 10.1002/cssc.201800958] DOI Google Scholar	Feedstocks
2018	Rencoret, J., Kim, H., Evaristo, A.B., Gutiérrez, A., Ralph, J. & del Rio, J.C. "Variability in lignin composition and structure in cell walls of different parts of macaúba (Acrocomia aculeata) palm fruit." Journal of Agricultural and Food Chemistry 66,1, 138-153+ (2018). [DOI: 10.1021/acs.jafc.7b04638] DOI Google Scholar	Feedstocks
2018	Rodriguez-R, L.M., Gunturu, S., Tiedje, J.M., Cole, J.R. & Konstantinidis, K.T. "Nonpareil 3: fast estimation of metagenomic coverage and sequence diversity." mSystems 3,3, (2018). [DOI: 10.1128/mSystems.00039-18] DOI Google Scholar	Sustainability
2018	Roley, S.S., Duncan, D.S., Liang, D., Garoutte, A., Jackson, R.D., Tiedje, J.M. & Robertson, P. "Associative nitrogen fixation (ANF) in switchgrass (Panicum virgatum) across a nitrogen input gradient." PLOS ONE 13,6, (2018). [DOI: 10.1371/journal.pone.0197320] DOI Google Scholar	Sustainability
2018	Sardi, M. & Gasch, A.P. "Genetic background effects in quantitative genetics: gene-by-system interactions." Current Genetics 64,6, 1173–1176+ (2018). [DOI: 10.1007/s00294-018-0835-7] DOI Google Scholar
2018	Sardi, M., Krause, M., Heilberger, J. & Gasch, A.P. "Genotype-by-environment-by-environment interactions in the Saccharomyces cerevisiae transcriptomic response to alcohols and anaerobiosis." G3: Genes \| Genomes \| Genetics 8,12, 3881-3890+ (2018). [DOI: 10.1534/g3.118.200677] DOI Google Scholar	Conversion
2018	Sardi, M., Paithane, V., Place, M., Robinson, D.E., Hose, J., Wohlbach, D.J. & Gasch, A.P. "Genome-wide association across Saccharomyces cerevisiae strains reveals substantial variation in underlying gene requirements for toxin tolerance." PLOS Genetics 14,2, (2018). [DOI: 10.1371/journal.pgen.1007217] DOI Google Scholar	Conversion