Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2018	Karlen, S.D., Free, H.C.A., Padmakshan, D., Smith, B.G., Ralph, J. & Harris, P.J. "Commelinid monocotyledon lignins are acylated by p-coumarate." Plant Physiology 177, 513-521+ (2018). [DOI: 10.1104/pp.18.00298] DOI Google Scholar	Feedstocks
2018	Kasmerchak, C.S. & Schaetzl, R. "Soils of the GLBRC marginal land experiment (MLE) sites." Kellogg Biological Station Long-term Ecological Research Special Publication DOI: 10.5281/zenodo.2578237, (2018). [DOI: 10.5281/zenodo.2578237] DOI Google Scholar	Sustainability
2018	Kim, S., Zhang, X., Dale, B.E., Reddy, A.D., Jones, C.D. & Izaurralde, R.C. "EISA (Energy Independence and Security Act) compliant ethanol fuel from corn stover in a depot-based decentralized system." Biofuels, Bioproducts and Biorefining 12,5, 873-881+ (2018). [DOI: 10.1002/bbb.1899] DOI Google Scholar	Deconstruction
2018	Kim, S.-J., Zemelis-Durfee, S., Jensen, J.K., Wilkerson, C.G., Keegstra, K. & Brandizzi, F. "In the grass species Brachypodium distachyon, the production of mixed-linkage (1,3;1,4)-β-glucan (MLG) occurs in the Golgi apparatus." The Plant Journal 93,6, 1062-1075+ (2018). [DOI: 10.1111/tpj.13830] DOI Google Scholar	Feedstocks
2018	Kim, T.N., Bartel, S., Wills, B.D., Landis, D.A. & Gratton, C. "Disturbance differentially affects alpha and beta diversity of ants in tallgrass prairies." Ecosphere 9,10, (2018). [DOI: 10.1002/ecs2.2399] DOI Google Scholar	Sustainability
2018	Kong, L. & Maravelias, C.T. "An optimization-based approach for simultaneous chemical process and heat exchanger network synthesis." Industrial & Engineering Chemistry Research 57,18, 6330-6343+ (2018). [DOI: 10.1021/acs.iecr.8b00065] DOI Google Scholar	Deconstruction
2018	Kontur, W.S., Bingman, C.A., Olmsted, C.N., Wassarman, D.R., Ulbrich, A., Gall, D.L., Smith, R.W., Yusko, L.M., Fox, B.G., Noguera, D.R., et al. "Novosphingobium aromaticivorans uses a Nu-class glutathione S-transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin." Journal of Biological Chemistry 293,14, 4955-4968+ (2018). [DOI: 10.1074/jbc.RA117.001268] DOI Google Scholar	Conversion
2018	Krassowski, T., Coughlan, A.Y., Shen, X.-X., Zhou, X., Kominek, J., Opulente, D.A., Riley, R., Grigoriev, I.V., Maheshwari, N., Shields, D.C., et al. "Evolutionary instability of CUG-Leu in the genetic code of budding yeasts." Nature Communications 9,1, 1887+ (2018). [DOI: 10.1038/s41467-018-04374-7] DOI Google Scholar	Conversion
2018	Krause, D.J., Kominek, J., Opulente, D.A., Shen, X.-X., Zhou, X., Langdon, Q.K., DeVirgilio, J., Hulfachor, A.B., Kurtzman, C.P., Rokas, A., et al. "Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts." Proceedings of the National Academy of Sciences of the United States of America 115,43, 11030-11035+ (2018). [DOI: 10.1073/pnas.1806268115] DOI Google Scholar	Conversion
2018	Kravchenko, A.N., Guber, A.K., Quigley, M.Y., Koestel, J., Gandhi, H. & Ostrom, N.E. "X-ray computed tomography to predict soil N2O production via bacterial denitrification and N2O emission in contrasting bioenergy cropping systems." Global Change Biology – Bioenergy 10,11, 894-909+ (2018). [DOI: 10.1111/gcbb.12552] DOI Google Scholar	Sustainability
2018	Kuang, M.C., Kominek, J., Alexander, W.G., Cheng, J.-F., Wrobel, R.L. & Hittinger, C.T. "Repeated cis-regulatory tuning of a metabolic bottleneck gene during evolution." Molecular Biology and Evolution 35,8, 1968-1981+ (2018). [DOI: 10.1093/molbev/msy102] DOI Google Scholar	Conversion
2018	Kumar, R., Bhagia, S., Smith, M.D., Petridis, L., Ong, R.G., Cai, C.M., Mittal, A., Himmel, M.H., Balan, V., Dale, B.E., et al. "Cellulose-hemicellulose interactions at elevated temperatures increase cellulose recalcitrance to biological conversion." Green Chemistry 20,4, 921-934+ (2018). [DOI: 10.1039/C7GC03518G] DOI Google Scholar	Deconstruction
2018	Kutlu, T., Guber, A.K., Rivers, M.L. & Kravchenko, A.N. "Moisture absorption by plant residue in soil." Geoderma 316, 47-55+ (2018). [DOI: 10.1016/j.geoderma.2017.11.043] DOI Google Scholar	Sustainability
2018	Lai, Y.-S., Stefano, G., Zemelis-Durfee, S., Ruberti, C., Gibbons, L. & Brandizzi, F. "Systemic signaling contributes to the unfolded protein response of the plant endoplasmic reticulum." Nature Communications 9,1, 3918+ (2018). [DOI: 10.1038/s41467-018-06289-9] DOI Google Scholar	Feedstocks
2018	Lan, W., Yue, F., Rencoret, J., del Rio, J.C., Boerjan, W., Lu, F. & Ralph, J. "Elucidating tricin-lignin structures: assigning correlations in HSQC spectra of monocot lignins." Polymers 10,8, 916+ (2018). [DOI: 10.3390/polym10080916] DOI Google Scholar	Feedstocks
2018	Langdon, Q.K., Peris, D., Kyle, B. & Hittinger, C.T. "sppIDer: a species identification tool to investigate hybrid genomes with high-throughput sequencing." Molecular Biology and Evolution 35,11, 2835-2849+ (2018). [DOI: 10.1093/molbev/msy166] DOI Google Scholar	Conversion
2018	Lapierre, C., Voxeur, A., Karlen, S.D., Helm, R.F. & Ralph, J. "Evaluation of feruloylated and p-coumaroylated arabinosyl units in grass arabinoxylans by acidolysis in dioxane/methanol." Journal of Agricultural and Food Chemistry 66,21, 5418-5424+ (2018). [DOI: 10.1021/acs.jafc.8b01618] DOI Google Scholar	Feedstocks
2018	Lettow, M.C., Brudvig, L.A., Bahlai, C.A., Gibbs, J., Jean, R.P. & Landis, D.A. "Bee community responses to a gradient of oak savanna restoration practices." Restoration Ecology 26,5, 882-890+ (2018). [DOI: 10.1111/rec.12655] DOI Google Scholar	Sustainability
2018	Li, M., Yan, G., Bhalla, A., Maldonado-Pereira, L., RUssell, P.R., Ding, S.-Y., Mullet, J.E. & Hodge, D.B. "Physical fractionation of sweet sorghum and forage/energy sorghum for optimal processing in a biorefinery." Industrial Crops and Products 124, 607-616+ (2018). [DOI: 10.1016/j.indcrop.2018.07.002] DOI Google Scholar	Feedstocks
2018	Li, N., Li, Y., Yoo, C.G., Yang, X., Lin, X., Ralph, J. & Pan, X. "An uncondensed lignin depolymerized in the solid state and isolated from lignocellulosic biomass: a mechanistic study." Green Chemistry 20,18, 4224-4235+ (2018). [DOI: 10.1039/C8GC00953H] DOI Google Scholar	Feedstocks
2018	Li, Y., Shuai, L., Kim, H., Motagamwala, A.H., Mobley, J.K., Yue, F., Tobimatsu, Y., Havkin-Frenkel, D., Chen, F., Dixon, R.A., et al. "An “ideal lignin” facilitates full biomass utilization." Science Advances 4,9, (2018). [DOI: 10.1126/sciadv.aau2968] DOI Google Scholar	Feedstocks
2018	Lomax, A., Woods, D.P., Dong, Y., Bouché, F., Rong, Y., Mayer, K.S., Zhong, X. & Amasino, R.M. "An ortholog of CURLY LEAF/ENHANCER OF ZESTE like-1 is required for proper flowering in Brachypodium distachyon." The Plant Journal 93,5, 871-882+ (2018). [DOI: 10.1111/tpj.13815] DOI Google Scholar	Feedstocks
2018	Lovell, J.T., Jenkins, J., Lowry, D.B., Mamidi, S., Sreedasyam, A., Weng, X., Barry, K., Bonnette, J., Campitelli, B., Daum, C., et al. "The genomic landscape of molecular responses to natural drought stress in Panicum hallii." Nature Communications 9,1, 5213+ (2018). [DOI: 10.1038/s41467-018-07669-x] DOI Google Scholar	Sustainability
2018	MacGilvray, M.E., Shishkova, E., Chasman, D., Place, M., Gitter, A., Coon, J.J. & Gasch, A.P. "Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response." PLOS Computational Biololgy 13,5, (2018). [DOI: 10.1371/journal.pcbi.1006088] DOI Google Scholar	Conversion
2018	Mackelprang, R., Grube, A.M., Lamendella, R., Jesus, E. da C., Copeland, A., Liang, C., Jackson, R.D., Rice, C.W., Kapucija, S., Parsa, B., et al. "Microbial community structure and functional potential in cultivated and native tallgrass prairie soils of the midwestern United States." Frontiers in Microbiology 9, 1775+ (2018). [DOI: 10.3389/fmicb.2018.01775] DOI Google Scholar	Sustainability