Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2018	Santos-Villalobos, de los, Kremer, J.M., Parra-Cota, F.I., Hayano-Kanashiro, A.C., García-Ortega, L.F., Gunturu, S.K., Tiedje, J.M., . Y. He, S. & Peña-Cabriales, J.J. "Draft genome of the fungicidal biological control agent Burkholderia anthina strain XXVI." Archives of Microbiology 200,5, 803-810+ (2018). [DOI: 10.1007/s00203-018-1490-6] DOI Google Scholar	Sustainability
2018	de Souza, W.R., Martins, P.K., Freeman, J., Pellny, T.K., Michaelson, L.V., Sampaio, B.L., Vinecky, F., Ribeiro, A.P., da Cunha, B.A.D.B., Kobayashi, A.K., et al. "Suppression of a single BAHD gene in Setaria viridis causes large, stable decreases in cell wall feruloylation and increases biomass digestibility." New Phytologist 218,1, 81-93+ (2018). [DOI: 10.1111/nph.14970] DOI Google Scholar	Feedstocks
2018	del Rio, J.C., Rencoret, J., Gutiérrez, A., Kim, H. & Ralph, J. "Structural characterization of lignin from maize (Zea mays L.) fibers: evidence for diferuloylputrescine incorporated into the lignin polymer in maize kernels." Journal of Agricultural and Food Chemistry 66,17, 4402-4413+ (2018). [DOI: 10.1021/acs.jafc.8b00880] DOI Google Scholar	Feedstocks
2018	Dou, J., Kim, H., Li, Y., Padmakshan, D., Yue, F., Ralph, J. & Vuorinen, T. "Structural characterization of lignins from willow bark and wood." Journal of Agricultural and Food Chemistry 66,28, 7294-7300+ (2018). [DOI: 10.1021/acs.jafc.8b02014] DOI Google Scholar
2018	Dou, J., Xu, W., Koivisto, J.J., Mobley, J.K., Padmakshan, D., Kögler, M., Xu, C., Willför, S., Ralph, J. & Vuorinen, T. "Characteristics of hot water extracts from the bark of cultivated willow (Salix sp.)." ACS Sustainable Chemistry & Engineering 6,4, 5566–5573+ (2018). [DOI: 10.1021/acssuschemeng.8b00498] DOI Google Scholar	Feedstocks
2018	Du, Z.-Y., Alvaro, J., Hyden, B., Zienkiewicz, K., Benning, N., Zienkiewicz, A., Bonito, G. & Benning, C. "Enhancing oil production and harvest by combining the marine alga Nannochloropsis oceanica and the oleaginous fungus Mortierella elongata." Biotechnology for Biofuels 11,1, 174+ (2018). [DOI: 10.1186/s13068-018-1172-2] DOI Google Scholar	Feedstocks, Sustainability
2018	Eizaguirre, J.I., Peris, D., Rodriguez, M.E., Lopes, C.A., Rios, P.D.L., Hittinger, C.T. & Libkind, D. "Phylogeography of the wild Lager-brewing ancestor (Saccharomyces eubayanus) in Patagonia." Environmental Microbiology 20,10, 3732-3743+ (2018). [DOI: 10.1111/1462-2920.14375] DOI Google Scholar	Conversion
2018	Emery, S.M., Kinnetz, E.R., Bell-Dereske, L., Stahlheber, K.A., Gross, K.L. & Pennington, D. "Low variation in arbuscular mycorrhizal fungal associations and effects on biomass among switchgrass cultivars." Biomass and Bioenergy 119, 503-508+ (2018). [DOI: 10.1016/j.biombioe.2018.10.012] DOI Google Scholar	Sustainability
2018	Evans, J., Sanciangco, M.D., Lau, K.H., Crisovan, E., Barry, K., Daum, C., Hundley, H., Jenkins, J., Kennedy, M., Kunde-Ramamoorthy, G., et al. "Extensive genetic diversity is present within North American switchgrass germplasm." The Plant Genome 11,1, 170055+ (2018). [DOI: 10.3835/plantgenome2017.06.0055] DOI Google Scholar	Feedstocks
2018	Fan, M., Herburger, K., Jensen, J.K., Zemelis-Durfee, S., Brandizzi, F., Fry, S.C. & Wilkerson, C.G. "A trihelix family transcription factor is associated with key genes in mixed-linkage glucan accumulation." Plant Physiology 178,3, 1207-1221+ (2018). [DOI: 10.1104/pp.18.00978] DOI Google Scholar	Feedstocks
2018	Fasahati, P. & Maravelias, C.T. "Advanced biofuels of the future: atom-economical or energy-economical?" Joule 2,10, 1915-1919+ (2018). [DOI: 10.1016/j.joule.2018.09.007] DOI Google Scholar	Deconstruction
2018	Flores-Gómez, C.A., Silva, E.M.E., Zhong, C., Dale, B.E., Sousa, L. da C. & Balan, V. "Conversion of lignocellulosic agave residues into liquid biofuels using an AFEX™-based biorefinery." Biotechnology for Biofuels 11,1, 7+ (2018). [DOI: 10.1186/s13068-017-0995-6] DOI Google Scholar	Deconstruction
2018	Gall, D.L., Kontur, W.S., Lan, W., Kim, H., Li, Y., Ralph, J., Donohue, T.J. & Noguera, D.R. "In vitro enzymatic depolymerization of lignin with release of syringyl, guaiacyl, and tricin units." Applied and Environmental Microbiology 84,3, (2018). [DOI: 10.1128/AEM.02076-17] DOI Google Scholar	Feedstocks, Conversion
2018	Gao, R., Li, Y., Kim, H., Mobley, J.K. & Ralph, J. "Selective oxidation of lignin model compounds." ChemSusChem 11, 2045-2050+ (2018). [DOI: 10.1002/cssc.201800598] DOI Google Scholar
2018	Gomes, E.A., Lana, U.G.P., Quensen, J.F., de Sousa, S.M., Oliveira, C.A., Guo, J., Guimarães, L.J.M. & Tiedje, J.M. "Root-associated microbiome of maize genotypes with contrasting phosphorus use efficiency." Phytobiomes Journal 2,3, 129-137+ (2018). [DOI: 10.1094/PBIOMES-03-18-0012-R] DOI Google Scholar	Sustainability
2018	Goncalves, C., Wisecaver, J.H., Kominek, J., Oom, M.S., Leandro, M.J., Shen, X.-X., Opulente, D.A., Zhou, X., Peris, D., Kurtzman, C.P., et al. "Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage." eLife 7, (2018). [DOI: 10.7554/eLife.33034] DOI Google Scholar	Conversion
2018	Gould, B.A., Palacio-Mejia, J.D., Jenkins, J., Mamidi, S., Barry, K., Schmutz, J., Juenger, T.E. & Lowry, D.B. "Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae)." BMC Genomics 19,1, 792+ (2018). [DOI: 10.1186/s12864-018-5179-7] DOI Google Scholar	Sustainability
2018	Guber, A., Kravchenko, A., Razavi, B.S., Uteau, D., Peth, S., Blagodatskaya, E. & Kuzyakov, Y. "Quantitative soil zymography: mechanisms, processes of substrate and enzyme diffusion in porous media." Soil Biology and Biochemistry 127, 156-167+ (2018). [DOI: 10.1016/j.soilbio.2018.09.030] DOI Google Scholar	Sustainability
2018	Hamilton, S.K., Hussain, M.Z., Lowrie, C., Basso, B. & Robertson, G.P. "Evapotranspiration is resilient in the face of land cover and climate change in a humid temperate catchment." Hydrological Processes 32,5, 655-663+ (2018). [DOI: 10.1002/hyp.11447] DOI Google Scholar	Sustainability
2018	Haslun, J.A., Ostrom, N.E., Hegg, E.L. & Ostrom, P.H. "Estimation of isotope variation of N2O during denitrification by Pseudomonas aureofaciens and Pseudomonas chlororaphis: implications for N2O source apportionment." Biogeosciences 15,12, 3873–3882+ (2018). [DOI: 10.5194/bg-15-3873-2018] DOI Google Scholar	Deconstruction
2018	Hatfield, R.D., Jung, H., Marita, J.M. & Kim, H. "Cell wall characteristics of a maize mutant selected for decreased ferulates." American Journal of Plant Sciences 9,3, 446-466+ (2018). [DOI: 10.4236/ajps.2018.93034] DOI Google Scholar	Feedstocks
2018	Hebert, A.S., Prasad, S., Belford, M.W., Bailey, D.J., McAlister, G.C., Abbatiello, S.E., Huguet, R., Wouters, E.R., Dunyach, J.-J., Brademan, D.R., et al. "Comprehensive single-shot proteomics with FAIMS on a hybrid orbitrap mass spectrometer." Analytical Chemistry 90,15, 9529-9537+ (2018). [DOI: 10.1021/acs.analchem.8b02233] DOI Google Scholar
2018	Higgins, D.A., Young, M.K., Tremaine, M., Sardi, M., Fletcher, J.M., Agnew, M., Liu, L., Dickinson, Q., Peris, D., Wrobel, R.L., et al. "Natural variation in the multidrug efflux pump SGE1 underlies ionic liquid tolerance in yeast." Genetics 210,1, 219-234+ (2018). [DOI: 10.1534/genetics.118.301161] DOI Google Scholar	Conversion
2018	Hutchins, P.D., Russell, J.D. & Coon, J.J. "LipiDex: an integrated software package for high-confidence lipid identification." Cell Systems 6,5, 621-625.e5+ (2018). [DOI: 10.1016/j.cels.2018.03.011] DOI Google Scholar	Conversion
2018	Jones, C.D., Oates, L.G., Robertson, P. & Izaurralde, C. "Perennialization and cover cropping mitigate soil carbon loss from residue harvesting." Journal of Environmental Quality 47,4, 710-717+ (2018). [DOI: 10.2134/jeq2017.04.0177] DOI Google Scholar	Sustainability