Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2019	Song, Y., Motagamwala, A.H., Karlen, S.D., Dumesic, J.A., Ralph, J., Mobley, J.K. & Crocker, M. "A comparative study of secondary depolymerization methods on oxidized lignins." Green Chemistry 21,14, 3940-3947+ (2019). [DOI: 10.1039/c9gc01663e] DOI Google Scholar	Feedstocks
2019	Spiesman, B.J., Bennett, A., Isaacs, R. & Gratton, C. "Harvesting effects on wild bee communities in bioenergy grasslands depend on nesting guild." Ecological Applications 29,2, (2019). [DOI: 10.1002/eap.1828] DOI Google Scholar	Sustainability
2019	Steenwyk, J.L., Opulente, D.A., Kominek, J., Shen, X.-X., Zhou, X., Labella, A.L., Bradley, N.P., Eichman, B.F., Cadez, N., Libkind, D., et al. "Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts." PLOS Biology 17,5, (2019). [DOI: 10.1371/journal.pbio.3000255] DOI Google Scholar	Conversion
2019	Szymanski, L.M., Sanford, G.R., Heckman, K.A., Jackson, R.D. & Marín-Spiotta, E. "Conversion to bioenergy crops alters the amount and age of microbially-respired soil carbon." Soil Biology and Biochemistry 128, 35-44+ (2019). [DOI: 10.1016/j.soilbio.2018.08.025] DOI Google Scholar	Sustainability
2019	Tatli, M., Hebert, A.S., Coon, J.J. & Amador-Noguez, D. "Genome wide phosphoproteome analysis of Zymomonas mobilis under anaerobic, aerobic, and N2-fixing conditions." Frontiers in Microbiology 10, 1986+ (2019). [DOI: 10.3389/fmicb.2019.01986] DOI Google Scholar
2019	Throckmorton, K., Vinnik, V., Chowdhury, R., Cook, T., Chevrette, M.G., Maranas, C., Pfleger, B. & Thomas, M.G. "Directed evolution reveals the functional sequence space of an adenylation domain specificity code." ACS Chemical Biology 14,9, 2044-2054+ (2019). [DOI: 10.1021/acschembio.9b00532] DOI Google Scholar
2019	Tobimatsu, Y., Takano, T., Umezawa, T. & Ralph, J. "Solution-state multidimensional NMR of lignins: approaches and applications." in Lignin: Biosynthesis, Functions and Economic Significance. 79-110+ (Nova Science Publishers, Inc., 2019). Google Scholar	Feedstocks
2019	Uygun, S., Azodi, C.B. & Shiu, S.-H. "Cis-regulatory code for predicting plant cell-type transcriptional response to high salinity." Plant Physiology 181, 1739-1751+ (2019). [DOI: 10.1104/pp.19.00653] DOI Google Scholar
2019	Vanholme, R., De Meester, B., Ralph, J. & Boerjan, W. "Lignin biosynthesis and its integration into metabolism." Current Opinion in Biotechnology 56, 230-239+ (2019). [DOI: 10.1016/j.copbio.2019.02.018] DOI Google Scholar
2019	Vanholme, R., Sundin, L., Seetso, K.C., Kim, H., Liu, X., Li, J., De Meester, B., Hoengenaert, L., Goeminne, G., Morreel, K., et al. "COSY catalyses trans-cis isomerization and lactonization in the biosynthesis of coumarins." Nature Plants 5, 1066-1075+ (2019). [DOI: 10.1038/s41477-019-0510-0] DOI Google Scholar
2019	VanWallendael, A., Soltani, A., Emery, N.C., Peixoto, M.M., Olsen, J. & Lowry, D.B. "A molecular view of plant local adaptation: incorporating stress-response networks." Annual Review Plant Biology 70, 559-583+ (2019). [DOI: 10.1146/annurev-arplant-050718-100114] DOI Google Scholar	Sustainability
2019	Vermaas, J.V., Dixon, R.A., Chen, F., Mansfield, S.D., Boerjan, W., Ralph, J., Crowley, M.F. & Beckham, G.T. "Passive membrane transport of lignin-related compounds." Proceedings of the National Academy of Sciences of the United States of America 116,46, 23117-23123+ (2019). [DOI: 10.1073/pnas.1904643116] DOI Google Scholar
2019	Vermaas, J.V., Petridus, L., Ralph, J., Crowley, M.F. & Beckham, G.T. "Systematic parameterization of lignin for the CHARMM force field." Green Chemistry 21, 109-122+ (2019). [DOI: 10.1039/C8GC03209B] DOI Google Scholar
2019	von Haden, A.C., Kucharik, C.J., Jackson, R.D. & Marín-Spiotta, E. "Litter quantity, litter chemistry, and soil texture control changes in soil organic carbon fractions under bioenergy cropping systems of the North Central U.S." Biogeochemistry 143,3, 313-326+ (2019). [DOI: 10.1007/s10533-019-00564-7] DOI Google Scholar	Sustainability
2019	Wagner, E.R., Myers, K.S., Riley, N.M., Coon, J.J. & Gasch, A.P. "PKA and HOG signaling contribute separable roles to anaerobic xylose fermentation in yeast engineered for biofuel production." PLOS ONE 14,5, (2019). [DOI: 10.1371/journal.pone.0212389] DOI Google Scholar
2019	Walker, T.W., Motagamwala, A.H., Dumesic, J.A. & Huber, G.W. "Fundamental catalytic challenges to design improved biomass conversion technologies." Journal of Catalysis 369, 518-525+ (2019). [DOI: 10.1016/j.jcat.2018.11.028] DOI Google Scholar	Conversion
2019	Williams, D.L., Ong, R.G., Mullet, J.E. & Hodge, D.B. "Integration of pretreatment with simultaneous counter-current extraction of energy sorghum for high-titer mixed sugar production." Frontiers in Energy Research 6, 133+ (2019). [DOI: 10.3389/fenrg.2018.00133] DOI Google Scholar	Feedstocks, Deconstruction
2019	Wills, B.D., Kim, T.N., Fox, A.F., Gratton, C. & Landis, D.A. "Reducing native ant abundance decreases predation rates in Midwestern grasslands." Environmental Entomology 48,6, 1360-1368+ (2019). [DOI: 10.1093/ee/nvz127] DOI Google Scholar	Sustainability
2019	Woods, D., Dong, Y., Bouché, F., Bednarek, R., Rowe, M., Ream, T. & Amasino, R. "A florigen paralog is required for short-day vernalization in a pooid grass." eLife 8, (2019). [DOI: 10.7554/eLife.42153] DOI Google Scholar Data	Feedstocks, Sustainability
2019	Wu, W. & Maravelias, C.T. "Identifying the characteristics of promising renewable replacement chemicals." iScience 15, 136-146+ (2019). [DOI: 10.1016/j.isci.2019.04.012] DOI Google Scholar	Deconstruction
2019	Wu, W., Yenkie, K.M. & Maravelias, C.T. "Synthesis and analysis of separation processes for extracellular chemicals generated from microbial conversions." BMC Chemical Engineering 1, 21+ (2019). [DOI: 10.1186/s42480-019-0022-8] DOI Google Scholar
2019	Xue, C., Hao, Y., Pu, X., Penton, R., Wang, Q., Zhao, M., Zhang, B., Ran, W., Huang, Q., Shen, Q., et al. "Effect of LSU and ITS genetic markers and reference databases on analyses of fungal communities." Biology and Fertility of Soils 55,1, 79-88+ (2019). [DOI: 10.1007/s00374-018-1331-4] DOI Google Scholar	Sustainability
2019	Yan, X., Liu, J., Kim, H., Liu, B., Huang, X., Yang, Z., Lin, Y.-C., Chen, H., Yang, C., Wang, J.P., et al. "CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa." New Phytologist 222,1, 244-260+ (2019). [DOI: 10.1111/nph.15505] DOI Google Scholar	Feedstocks
2019	Yeung, L.Y., Haslun, J.A., Ostrom, N.E., Sun, T., Young, E.D., van Kessel, M.A.H.J., Lücker, S. & Jetten, M.S.M. "In situ quantification of biological N2 production using naturally occurring 15N15N." Environmental Science & Technology 53,9, 5168-5175+ (2019). [DOI: 10.1021/acs.est.9b00812] DOI Google Scholar	Sustainability
2019	Zhang, Y., Vera, J.M., Xie, D., Serate, J., Pohlmann, E., Russell, J.D., Hebert, A.S., Coon, J.J., Sato, T.K. & Landick, R. "Multiomic fermentation using chemically defined synthetic hydrolyzates revealed multiple effects of lignocellulose-derived inhibitors on cell physiology and xylose utilization in Zymomonas mobilis." Frontiers in Microbiology 10, 2596+ (2019). [DOI: 10.3389/fmicb.2019.02596] DOI Google Scholar