Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2019	Moore, B.M., Wang, P., Fan, P., Leong, B., Schenck, C.A., Lloyd, J.P., Lehti-Shiu, M.D., Last, R.L., Pichersky, E. & Shiu, S.-H. "Robust predictions of specialized metabolism genes through machine learning." Proceedings of the National Academy of Sciences of the United States of America 116,6, 2344-2353+ (2019). [DOI: 10.1073/pnas.1817074116] DOI Google Scholar
2019	Motagamwala, A.H., Huang, K., Maravelias, C.T. & Dumesic, J.A. "Solvent system for effective near-term production of hydroxymethylfurfural (HMF) with potential for long-term process improvement." Energy & Environmental Science 12,7, 2212-2222+ (2019). [DOI: 10.1039/C9EE00447E] DOI Google Scholar
2019	Myers, K.S., Riley, N.M., MacGilvray, M.E., Sato, T.K., McGee, M., Heilberger, J., Coon, J.J. & Gasch, A.P. "Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast." PLOS Genetics 15,3, (2019). [DOI: 10.1371/journal.pgen.1008037] DOI Google Scholar	Conversion
2019	Ng, R.T.L., Fasahati, P., Huang, K. & Maravelias, C.T. "Utilizing stillage in the biorefinery: economic, technological and energetic analysis." Applied Energy 241, 491-503+ (2019). [DOI: 10.1016/j.apenergy.2019.03.020] DOI Google Scholar
2019	Opulente, D.A., Langdon, Q.K., Buh, K.V., Haase, M.A.B., Sylvester, K., Moriarty, R.V., Jarzyna, M., Considine, S.L., Schneider, R.M. & Hittinger, C.T. "Pathogenic budding yeasts isolated outside of clinical settings." FEMS Yeast Research 19,3, (2019). [DOI: 10.1093/femsyr/foz032] DOI Google Scholar
2019	Oyarce, P., De Meester, B., Fonseca, F., de Vries, L., Goeminne, G., Pallidis, A., De Rycke, R., Tsuji, Y., Li, Y., Van den Bosch, S., et al. "Introducing curcumin biosynthesis in Arabidopsis enhances lignocellulosic biomass processing." Nature Plants 5,2, 225-237+ (2019). [DOI: 10.1038/s41477-018-0350-3] DOI Google Scholar	Feedstocks
2019	Panchy, N.L., Azodi, C.B., Winship, E.F., O’Malley, R.C. & Shiu, S.-H. "Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication." BMC Evolutionary Biology 19,1, 77+ (2019). [DOI: 10.1186/s12862-019-1398-z] DOI Google Scholar
2019	Park, S., Song, B., Shen, W. & Ding, S.-Y. "A mutation in the catalytic domain of cellulose synthase 6 halts its transport to the Golgi apparatus." Journal of Experimental Botany 70,21, 6071–6083+ (2019). [DOI: 10.1093/jxb/erz369] DOI Google Scholar
2019	Perez, J.M., Kontur, W.S., Alherech, M., Coplien, J., Karlen, S.D., Stahl, S.S., Donohue, T.J. & Noguera, D.R. "Funneling aromatic products of chemically depolymerized lignin into 2-pyrone-4-6- dicarboxylic acid with Novosphingobium aromaticivorans." Green Chemistry 21,6, 1340-1350+ (2019). [DOI: 10.1039/c8gc03504k] DOI Google Scholar	Conversion
2019	Rafiee, M., Alherech, M., Karlen, S.D. & Stahl, S.S. "Electrochemical aminoxyl-mediated oxidation of primary alcohols in lignin to carboxylic acids: polymer modification and depolymerization." Journal of the American Chemical Society 141,38, 15266-15276+ (2019). [DOI: 10.1021/jacs.9b07243] DOI Google Scholar	Conversion
2019	Ralph, J., Lapierre, C. & Boerjan, W. "Lignin structure and its engineering." Current Opinion in Biotechnology 56, 240-249+ (2019). [DOI: 10.1016/j.copbio.2019.02.019] DOI Google Scholar	Feedstocks
2019	Ramstein, G.P. & Casler, M.D. "Extensions of BLUP models for genomic prediction in heterogeneous populations: application in a diverse switchgrass sample." G3: Genes \| Genomes \| Genetics 9,3, 789-805+ (2019). [DOI: 10.1534/g3.118.200969] DOI Google Scholar	Feedstocks
2019	Razavi, B.S., Zhang, X., Bilyera, N., Guber, A. & Zarebanadkouki, M. "Soil zymography: simple and reliable? Review of current knowledge and optimization of the method." Rhizosphere 11, 100161+ (2019). [DOI: 10.1016/j.rhisph.2019.100161] DOI Google Scholar	Sustainability
2019	Rencoret, J., Neiva, D., Marques, G., Gutiérrez, A., Kim, H., Gominho, J., Pereira, H., Ralph, J. & del Rio, J.C. "Hydroxystilbene glucosides are incorporated into Norway spruce bark lignin." Plant Physiology 180,3, 1310-1321+ (2019). [DOI: 10.1104/pp.19.00344] DOI Google Scholar
2019	Roley, S.S., Xue, C., Hamilton, S.K., Tiedje, J.M. & Robertson, P. "Isotopic evidence for episodic nitrogen fixation in switchgrass (Panicum virgatum L.)." Soil Biology and Biochemistry 129, 90-98+ (2019). [DOI: 10.1016/j.soilbio.2018.11.006] DOI Google Scholar	Sustainability
2019	Ryu, J. & Maravelias, C.T. "Simultaneous process and heat exchanger network synthesis using a discrete temperature grid." Industrial & Engineering Chemistry Research 58,15, 6002-6016+ (2019). [DOI: 10.1021/acs.iecr.8b04083] DOI Google Scholar
2019	Sadre, R., Kuo, P., Chen, J., Yang, Y., Banerjee, A., Benning, C. & Hamberger, B. "Cytosolic lipid droplets as engineered organelles for production and accumulation of terpenoid biomaterials in leaves." Nature Communications 10,1, 853+ (2019). [DOI: 10.1038/s41467-019-08515-4] DOI Google Scholar	Feedstocks
2019	Sakai, S. & Rothamer, D. "Impact of ethanol blending on particulate emissions from a spark-ignition direct-injection engine." Fuel 236, 1548-1558+ (2019). [DOI: 10.1016/j.fuel.2018.09.037] DOI Google Scholar	Conversion
2019	Schuh, M.K., Bahlai, C.A., Malmstrom, C.M. & Landis, D.A. "Effect of switchgrass ecotype and cultivar on establishment, feeding, anddevelopment of fall armyworm (Lepidoptera: Noctuidae)." Journal of Economic Entomology 112,1, 440-449+ (2019). [DOI: 10.1093/jee/toy292] DOI Google Scholar	Sustainability
2019	Shade, A. & Stopnisek, N. "Abundance-occupancy distributions to prioritize plant core microbiome membership." Current Opinion in Microbiology 49, 50-58+ (2019). [DOI: 10.1016/j.mib.2019.09.008] DOI Google Scholar
2019	Shcherbak, I. & Robertson, P. "Nitrous oxide (N2O) emissions from subsurface soils of agricultural ecosystems." Ecosystems 22,7, 1650–1663+ (2019). [DOI: 10.1007/s10021-019-00363-z] DOI Google Scholar	Sustainability
2019	Shen, W., Collings, C., Li, M., Markovicz, J., Ralph, J., Mansfield, S.D. & Ding, S.-Y. "Imaging changes in cell walls of engineered poplar by stimulated Raman scattering and atomic force microscopy." ACS Sustainable Chemistry & Engineering 7,12, 10616-10622+ (2019). [DOI: 10.1021/acssuschemeng.9b01166] DOI Google Scholar
2019	Shuai, G., Martinez-Feria, R.A., Zhang, J., Li, S., Price, R. & Basso, B. "Capturing maize stand heterogeneity across yield-stability zones using unmanned aerial vehicles (UAV)." Sensors 19,20, 4446+ (2019). [DOI: 10.3390/s19204446] DOI Google Scholar
2019	Smercina, D.N., Evans, S.E., Friesen, M.L. & Tiemann, L.K. "To fix or not to fix: controls on free-living nitrogen fixation in the rhizosphere." Applied and Environmental Microbiology 85,6, (2019). [DOI: 10.1128/AEM.02546-18] DOI Google Scholar
2019	Smercina, D.N., Evans, S.E., Friesen, M.L. & Tiemann, L.K. "Optimization of the 15N2 incorporation and acetylene reduction methods for free-living nitrogen fixation." Plant and Soil 445, 595-611+ (2019). [DOI: 10.1007/s11104-019-04307-3] DOI Google Scholar	Sustainability