Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2019	Labella, A.L., Opulente, D.A., Steenwyk, J.L., Hittinger, C.T. & Rokas, A. "Variation and selection on codon usage bias across an entire subphylum." PLOS Genetics 15,7, (2019). [DOI: 10.1371/journal.pgen.1008304] DOI Google Scholar
2019	Lal, P.B., Wells, F., Lyu, Y., Ghosh, I., Landick, R. & Kiley, P.J. "A markerless method for genome engineering in Zymomonas mobilis ZM4." Frontiers in Microbiology 10, 2216+ (2019). [DOI: 10.3389/fmicb.2019.02216] DOI Google Scholar
2019	Lam, P.Y., Tobimatsu, Y., Matsumoto, N., Suzuki, S., Lan, W., Takeda, Y., Yamamura, M., Sakamoto, M., Ralph, J., Lo, C., et al. "OsCAldOMT1 is a bifunctional O-methyltransferase involved in the biosynthesis of tricin lignins in rice cell walls." Scientific Reports 9,1, 11597+ (2019). [DOI: 10.1038/s41598-019-47957-0] DOI Google Scholar	Feedstocks
2019	Lan, W., Rencoret, J., del Rio, J.C. & Ralph, J. "Tricin in grass lignin: biosynthesis, characterization, and quantitation." in Lignin: Biosynthesis, Functions and Economic Significance. 51-78+ (Nova Science Publishers, Inc., 2019). Google Scholar	Feedstocks
2019	Langdon, Q.K., Peris, D., Baker, E.C.P., Opulente, D.A., Nguyen, H.-V., Bond, U., Goncalves, P., Sampaio, J.P., Libkind, D. & Hittinger, C.T. "Fermentation innovation through complex hybridization of wild and domesticated yeasts." Nature Ecology & Evolution 3,11, 1576-1586+ (2019). [DOI: 10.1038/s41559-019-0998-8] DOI Google Scholar
2019	Lantz, A.T., Allman, J., Weraduwage, S.M. & Sharkey, T.D. "Isoprene: new insights into the control of emission and mediation of stress tolerance by gene expression." Plant, Cell & Environment 42,10, 2808-2826+ (2019). [DOI: 10.1111/pce.13629] DOI Google Scholar
2019	Lantz, A.T., Solomon, C., Gog, L., McClain, A.M., Weraduwage, S.M., Cruz, J.A. & Sharkey, T.D. "Isoprene suppression by CO2 is not due to triose phosphate utilization (TPU) limitation." Frontiers in Forests and Global Change 2, 8+ (2019). [DOI: 10.3389/ffgc.2019.00008] DOI Google Scholar
2019	Lapierre, C., Voxeur, A., Boutet-Mercey, S. & Ralph, J. "Arabinose conjugates diagnostic of ferulate-ferulate and ferulate-monolignol cross-coupling are released by mild acidolysis of grass cell walls." Journal of Agricultural and Food Chemistry 67, 12962-12971+ (2019). [DOI: 10.1021/acs.jafc.9b05840] DOI Google Scholar
2019	Lawson, C.E., Harcombe, W.R., Hatzenpichler, R., Lindemann, S.R., Loffler, F.E., O'Malley, M.A., Martin, H.G., Pfleger, B.F., Raskin, L., Venturelli, O.S., et al. "Common principles and best practices for engineering microbiomes." Nature Reviews Microbiology 17,12, 725–741+ (2019). [DOI: 10.1038/s41579-019-0255-9] DOI Google Scholar
2019	Lee, M.-H., Jeon, H.S., Kim, S.H., Chung, J.H., Roppolo, D., Lee, H.-J., Cho, H.J., Tobimatsu, Y., Ralph, J. & Park, O.K. "Lignin-based barrier restricts pathogens to the infection site and confers resistance in plants." The EMBO Journal 38,23, (2019). [DOI: 10.15252/embj.2019101948] DOI Google Scholar	Feedstocks
2019	Li, X.C., Peris, D., Hittinger, C.T., Sia, E.A. & Fay, J.C. "Mitochondria-encoded genes contribute to evolution of heat and cold tolerance in yeast." Science Advances 5,1, (2019). [DOI: 10.1126/sciadv.aav1848] DOI Google Scholar	Conversion
2019	Li, Y., Demir, B., Ramos, L.M.V., Chen, M., Dumesic, J.A. & Ralph, J. "Kinetic and mechanistic insights into hydrogenolysis of lignin to monomers in a continuous flow reactor." Green Chemistry 21, 3561-3572+ (2019). [DOI: 10.1039/c9gc00986h] DOI Google Scholar
2019	Liu, N., Li, H., Chevrette, M.G., Zhang, L., Cao, L., Zhou, H., Zhou, X., Zhou, Z., Pope, P.B., Currie, C.R., et al. "Functional metagenomics reveals abundant polysaccharide-degrading gene clusters and cellobiose utilization pathways within gut microbiota of a wood-feeding higher termite." The ISME Journal 13,1, 104-117+ (2019). [DOI: 10.1038/s41396-018-0255-1] DOI Google Scholar	Deconstruction
2019	Liu, X., Gupta, S.T.P., Bhimsaria, D., Reed, J.L., Rodriguez-Martinez, J.A., Ansari, A.Z. & Raman, S. "De novo design of programmable inducible promoters." Nucleic Acids Research 47,19, 10452-10463+ (2019). [DOI: 10.1093/nar/gkz772] DOI Google Scholar
2019	Liu, X., Li, Y., Ewulonu, C.M., Ralph, J., Xu, F., Zhang, Q., Wu, M. & Huang, Y. "Mild alkaline pretreatment for isolation of native-like lignin and lignin-containing cellulose nanofibers (LCNF) from crop waste." ACS Sustainable Chemistry & Engineering 7,16, 14135-14142+ (2019). [DOI: 10.1021/acssuschemeng.9b02800] DOI Google Scholar
2019	Liu, Y., Landick, B. & Raman, S. "A regulatory NADH/NAD+ redox biosensor for bacteria." ACS Synthetic Biology 8,2, 264-273+ (2019). [DOI: 10.1021/acssynbio.8b00485] DOI Google Scholar
2019	Lloyd, J.P., Bowman, M.J., Azodi, C.B., Sowers, R.P., Moghe, G.D., Childs, K.L. & Shiu, S.-H. "Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae." Scientific Reports 9,1, 12122+ (2019). [DOI: 10.1038/s41598-019-47797-y] DOI Google Scholar
2019	Lowry, D.B., Lovell, J.T., Zhang, L., Bonnette, J., Fay, P.A., Mitchell, R.B., Lloyd-Reilley, J., Boe, A.R., Wu, Y., Rouquette, F.M., et al. "QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient." Proceedings of the National Academy of Sciences of the United States of America 116,26, 12933-12941+ (2019). [DOI: 10.1073/pnas.1821543116] DOI Google Scholar	Sustainability
2019	Mahon, E.L. & Mansfield, S.D. "Tailor-made trees: engineering lignin for ease of processing and tomorrow’s bioeconomy." Current Opinion in Biotechnology 56, 147-155+ (2019). [DOI: 10.1016/j.copbio.2018.10.014] DOI Google Scholar
2019	Manning, P., Loos, J., Barnes, A.D., Batáry, P., Bianchi, F.J.J.A., Buchmann, N., De Deyn, G.B., Ebeling, A., Eisenhauer, N., Fischer, M., et al. "Transferring biodiversity-ecosystem function research to the management of ‘real-world’ ecosystems." Advances in Ecological Research 61, 323-356+ (2019). [DOI: 10.1016/bs.aecr.2019.06.009] DOI Google Scholar	Sustainability
2019	Martien, J.I., Hebert, A.S., Stevenson, D.M., Regner, M.R., Khana, D.B., Coon, J.J. & Amador-Noguez, D. "Systems-level analysis of oxygen exposure in Zymomonas mobilis: implications for isoprenoid production." mSystems 4,1, (2019). [DOI: 10.1128/mSystems.00284-18] DOI Google Scholar	Conversion
2019	McClelland, D.J., Galebach, P.H., Motagamwala, A.H., Wittrig, A.M., Karlen, S.D., Buchanan, S., Dumesic, J.A. & Huber, G.W. "Supercritical methanol depolymerization and hydrodeoxygenation of lignin and biomass over reduced copper porous metal oxides." Green Chemistry 21,11, 2988-3005+ (2019). [DOI: 10.1039/C9GC00589G] DOI Google Scholar
2019	Mehrer, C.R., Rand, J.M., Incha, M.R., Cook, T.B., Demir, B., Motagamwala, A.H., Kim, D., Dumesic, J.A. & Pfleger, B.F. "Growth-coupled bioconversion of levulinic acid to butanone." Metabolic Engineering 55, 92-101+ (2019). [DOI: 10.1016/j.ymben.2019.06.003] DOI Google Scholar
2019	Mellmer, M.A., Sanpitakseree, C., Demir, B., Ma, K., Elliott, W.A., Bai, P., Johnson, R.L., Walker, T.W., Shanks, B.H., Rioux, R.M., et al. "Effects of chloride ions in acid-catalyzed biomass dehydration reactions in polar aprotic solvents." Nature Communications 10, 1132+ (2019). [DOI: 10.1038/s41467-019-09090-4] DOI Google Scholar	Conversion
2019	Mokomele, T., Sousa, L. da C., Balan, V., van Rensburg, E., Dale, B.E. & Görgens, J.F. "Incorporating anaerobic co-digestion of steam exploded or ammonia fiber expansion pretreated sugarcane residues with manure into a sugarcane-based bioenergy-livestock nexus." Bioresource Technology 272, 326-336+ (2019). [DOI: 10.1016/j.biortech.2018.10.049] DOI Google Scholar	Deconstruction