Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2019	Azodi, C.B., Bolger, E., McCarren, A., Roantree, M., Campos, G. de L. & Shiu, S.-H. "Benchmarking parametric and machine learning models for genomic prediction of complex traits." G3: Genes \| Genomes \| Genetics 9,11, 3691-3702+ (2019). [DOI: 10.1534/g3.119.400498] DOI Google Scholar
2019	Baker, E.C.P. & Hittinger, C.T. "Evolution of a novel chimeric maltotriose transporter in Saccharomyces eubayanus from parent proteins unable to perform this function." PLOS Genetics 15,4, (2019). [DOI: 10.1371/journal.pgen.1007786] DOI Google Scholar	Conversion
2019	Baker, E.C.P., Peris, D., Moriarty, R.V., Li, X.C., Fay, J.C. & Hittinger, C.T. "Mitochondrial DNA and temperature tolerance in lager yeasts." Science Advances 5,1, (2019). [DOI: 10.1126/sciadv.aav1869] DOI Google Scholar	Conversion
2019	Banerjee, A., Arnesen, J.A., Moser, D., Motsa, B.B., Johnson, S.R. & Hamberger, B. "Engineering modular diterpene biosynthetic pathways in Physcomitrella patens." Planta 249,1, 221-233+ (2019). [DOI: 10.1007/s00425-018-3053-0] DOI Google Scholar	Feedstocks
2019	Basso, B., Shuai, G., Zhang, J. & Robertson, P. "Yield stability analysis reveals sources of large-scale nitrogen loss from the US Midwest." Scientific Reports 9, 5774+ (2019). [DOI: 10.1038/s41598-019-42271-1] DOI Google Scholar
2019	Benucci, G.M.N., Haridas, S., LaButti, K., Marozzi, G., Antonielli, L., Sanchez, S., Marco, P., Wang, X., Barry, K., Lipzen, A., et al. "Draft genome sequence of the ectomycorrhizal ascomycete Sphaerosporella brunnea." Microbiology Resource Announcements 8,50, (2019). [DOI: 10.1128/mra.00857-19] DOI Google Scholar	Sustainability
2019	Bhalla, A., Cai, C.M., Xu, F., Singh, S.K., Bansal, N., Phongpreecha, T., Dutta, T., Foster, C.E., Kumar, R., Simmons, B.A., et al. "Performance of three delignifying pretreatments on hardwoods: hydrolysis yields, comprehensive mass balances, and lignin properties." Biotechnology for Biofuels 12, 213+ (2019). [DOI: 10.1186/s13068-019-1546-0] DOI Google Scholar	Deconstruction
2019	Bonito, G., Benucci, G.M.N., Hameed, K., Weighill, D., Jones, P., Chen, K.-H., Jacobson, D., Schadt, C. & Vilgalys, R. "Fungal-bacterial networks in the Populus rhizobiome are impacted by soil properties and host genotype." Frontiers in Microbiology 10, 481+ (2019). [DOI: 10.3389/fmicb.2019.00481] DOI Google Scholar	Sustainability
2019	Bowsher, A.W., Kearns, P.J. & Shade, A. "16S rRNA/rRNA gene ratios and cell activity staining reveal consistent patterns of microbial activity in plant-associated soil." mSystems 4,2, (2019). [DOI: 10.1128/mSystems.00003-19] DOI Google Scholar
2019	Cadez, N., Bellora, N., Ulloa, R., Hittinger, C.T. & Libkind, D. "Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina." PLOS ONE 14,1, (2019). [DOI: 10.1371/journal.pone.0210792] DOI Google Scholar	Conversion
2019	Cao, P., Kim, S.-J., Xing, A., Schenck, C.A., Liu, L., Jiang, N., Wang, J., Last, R.L. & Brandizzi, F. "Homeostasis of branched-chain amino acids is critical for the activity of TOR signaling in Arabidopsis." Elife 8, (2019). [DOI: 10.7554/eLife.50747] DOI Google Scholar
2019	Chen, J., Sciusco, P., Ouyang, Z., Zhang, R., Henebry, G.M., John, R. & Roy, D.P. "Linear downscaling from MODIS to landsat: connecting landscape composition with ecosystem functions." Landscape Ecology 34,12, 2917–2934+ (2019). [DOI: 10.1007/s10980-019-00928-2] DOI Google Scholar	Sustainability
2019	Sousa, L. da C., Humpula, J., Balan, V., Dale, B.E. & Chundawat, S.P.S. "Impact of ammonia pretreatment conditions on the cellulose III allomorph ultrastructure and its enzymatic digestibility." ACS Sustainable Chemistry & Engineering 7,17, 14411-14424+ (2019). [DOI: 10.1021/acssuschemeng.9b00606] DOI Google Scholar	Deconstruction
2019	Daly, P., McClellan, C., Maluk, M., Oakey, H., Lapierre, C., Waugh, R., Stephens, J., Marshall, D., Barakate, A., Tsuji, Y., et al. "RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family." Plant Biotechnology Journal 17,3, 594-607+ (2019). [DOI: 10.1111/pbi.13001] DOI Google Scholar	Feedstocks
2019	Donohue, T.J. "Shedding light on a Group IV (ECF11) alternative sigma factor." Molecular Microbiology 112,2, 374-384+ (2019). [DOI: 10.1111/mmi.14280] DOI Google Scholar
2019	Du, Z.-Y., Zienkiewicz, K., Pol, N.V., Ostrom, N.E., Benning, C. & Bonito, G.M. "Algal-fungal symbiosis leads to photosynthetic mycelium." eLife 8, (2019). [DOI: 10.7554/eLife.47815] DOI Google Scholar Data	Feedstocks, Sustainability
2019	Dulys-Nusbaum, E., Klammer, S.S.H. & Swinton, S.M. "How willing are different types of landowner to supply hardwood timber residues for bioenergy?" Biomass and Bioenergy 122, 45-52+ (2019). [DOI: 10.1016/j.biombioe.2019.01.026] DOI Google Scholar	Sustainability
2019	Duncan, D.S., Oates, L.G., Gelfand, I., Millar, N., Robertson, P. & Jackson, R.D. "Environmental factors function as constraints on soil nitrous oxide fluxes in bioenergy feedstock cropping systems." Global Change Biology – Bioenergy 11,2, 416-426+ (2019). [DOI: 10.1111/gcbb.12572] DOI Google Scholar	Sustainability
2019	Dunivin, T.K., Choi, J., Howe, A. & Shade, A. "RefSoil+: a reference database for genes and traits of soil plasmids." mSystems 4,1, (2019). [DOI: 10.1128/mSystems.00349-18] DOI Google Scholar	Sustainability
2019	Elder, T., del Río, J.C., Ralph, J., Rencoret, J., Kim, H. & Beckham, G.T. "Radical coupling reactions of piceatannol and monolignols: a density functional theory study." Phytochemistry 164, 12-23+ (2019). [DOI: 10.1016/j.phytochem.2019.04.003] DOI Google Scholar	Feedstocks
2019	Fasahati, P., Liu, J., Ohlrogge, J.B. & Saffron, C.M. "Process design and economics for production of advanced biofuels from genetically modified lipid-producing sorghum." Applied Energy 239, 1459-1470+ (2019). [DOI: 10.1016/j.apenergy.2019.01.143] DOI Google Scholar	Deconstruction
2019	Felczak, M.M., Jacobson, T.B., Ong, W.K., Amador-Noguez, D. & TerAvest, M.A. "Expression of phosphofructokinase is not sufficient to enable Embden-Meyerhof-Parnas glycolysis in Zymomonas mobilis ZM4." Frontiers in Microbiology 10, 2270+ (2019). [DOI: 10.3389/fmicb.2019.02270] DOI Google Scholar
2019	Gage, J.L., Vaillancourt, B., Hamilton, J.P., Manrique-Carpintero, N.C., Gustafson, T.J., Barry, K., Lipzen, A., Tracy, W.F., Mikel, M.A., Kaeppler, S.M., et al. "Multiple maize reference genomes impact the identification of variants by genome-wide association study in a diverse inbred panel." The Plant Genome 12,2, 1-12+ (2019). [DOI: 10.3835/plantgenome2018.09.0069] DOI Google Scholar	Feedstocks
2019	Garedew, M., Young-Farhat, D., Jackson, J.E. & Saffron, C.M. "Electrocatalytic upgrading of phenolic compounds observed after lignin pyrolysis." ACS Sustainable Chemistry & Engineering 7,9, 8375-8386+ (2019). [DOI: 10.1021/acssuschemeng.9b00019] DOI Google Scholar	Deconstruction
2019	Ghosh, I.N., Martien, J., Hebert, A.S., Zhang, Y., Coon, J.J., Amador-Noguez, D. & Landick, R. "OptSSeq explores enzyme expression and function landscapes to maximize isobutanol production rate." Metabolic Engineering 52, 324-340+ (2019). [DOI: 10.1016/j.ymben.2018.12.008] DOI Google Scholar	Conversion