Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2020	Srivastava, P.A., Hegg, E.L., Fox, B.G. & Yennamalli, R.M. "PreDSLpmo: a neural network-based prediction tool for functional annotation of lytic polysaccharide monooxygenases." Journal of Biotechnology 308, 148-155+ (2020). [DOI: 10.1016/j.jbiotec.2019.12.002] DOI Google Scholar
2020	Stahlheber, K.A., Lindquist, J., Drogosh, P.D., Pennington, D. & Gross, K.L. "Predicting productivity: a trait-based analysis of variability in biomass yield among switchgrass feedstock cultivars." Agriculture, Ecosystems & Environment 300, 106980+ (2020). [DOI: 10.1016/j.agee.2020.106980] DOI Google Scholar	Sustainability
2020	Stoneman, H.R., Wrobel, R.L., Place, M., Graham, M., Krause, D.J., De Chiara, M., Liti, G., Schacherer, J., Landick, R., Gasch, A.P., et al. "CRISpy-Pop: a web tool for designing CRISPR/Cas9-driven genetic modifications in diverse populations." G3: Genes \| Genomes \| Genetics 10,11, 4287-4294+ (2020). [DOI: 10.1534/g3.120.401498] DOI Google Scholar
2020	Taifan, G.S.P. & Maravelias, C.T. "Integration of graphical approaches into optimization-based design of multistage liquid extraction." Computers & Chemical Engineering 143, 107126+ (2020). [DOI: 10.1016/j.compchemeng.2020.107126] DOI Google Scholar	Deconstruction, Sustainability
2020	Timokhin, V.I., Regner, M., Motagamwala, A.H., Sener, C., Karlen, S.D., Dumesic, J.A. & Ralph, J. "Production of p‐coumaric acid from corn GVL-lignin." ACS Sustainable Chemistry & Engineering 8,47, 17427–17438+ (2020). [DOI: 10.1021/acssuschemeng.0c05651] DOI Google Scholar
2020	Todor, H., Osadnik, H., Campbell, E.A., Myers, K.S., Li, H., Donohue, T.J. & Gross, C.A. "Rewiring the specificity of extracytoplasmic function sigma factors." Proceedings of the National Academy of Sciences of the United States of America 117,52, 33496-33506+ (2020). [DOI: 10.1073/pnas.2020204117] DOI Google Scholar
2020	Tsai, C.-J., Xu, P., Xue, L.-J., Hu, H., Nyamdari, B., Naran, R., Zhou, X., Goeminne, G., Gao, R., Gjersing, E., et al. "Compensatory guaiacyl lignin biosynthesis at the expense of syringyl lignin in 4CL1-knockout poplar." Plant Physiology 183, 123-136+ (2020). [DOI: 10.1104/pp.19.01550] DOI Google Scholar
2020	VanWallendael, A., Bonnette, J., Juenger, T.E., Fritschi, F.B., Fay, P.A., Mitchell, R.B., Lloyd-Reilley, J., Rouquette, F.M., Bergstrom, G.C. & Lowry, D.B. "Geographic variation in the genetic basis of resistance to leaf rust between locally adapted ecotypes of the biofuel crop switchgrass (Panicum virgatum)." New Phytologist 227,6, 1696-1708+ (2020). [DOI: 10.1111/nph.16555] DOI Google Scholar	Sustainability
2020	Vera, J.M., Ghosh, I.N., Zhang, Y., Hebert, A.S., Coon, J.J. & Landick, R. "Genome-scale transcription-translation mapping reveals features of Zymomonas mobilis transcription units and promoters." mSystems 5,4, (2020). [DOI: 10.1128/mSystems.00250-20] DOI Google Scholar
2020	Walker, T.W., Frelka, N., Shen, Z., Chew, A.K., Banick, J., Grey, S., Kim, M.S., Dumesic, J.A., Van Lehn, R.C. & Huber, G.W. "Recycling of multilayer plastic packaging materials by solvent-targeted recovery and precipitation." Science Advances 6,47, (2020). [DOI: 10.1126/sciadv.aba7599] DOI Google Scholar
2020	Walker, T.W., Kuch, N., Meulen, K.A.V., Clewett, C.F.M., Huber, G.W., Fox, B.G. & Dumesic, J.A. "Solid-state NMR studies of solvent-mediated, acid-catalyzed woody biomass pretreatment for enzymatic conversion of residual cellulose." ACS Sustainable Chemistry & Engineering 8,16, 6551-6563+ (2020). [DOI: 10.1021/acssuschemeng.0c01538] DOI Google Scholar
2020	Wang, F. & Stahl, S.S. "Electrochemical oxidation of organic molecules at lower overpotential: accessing broader functional group compatibility with electron-proton transfer mediators." Accounts of Chemical Research 53,3, 561-574+ (2020). [DOI: 10.1021/acs.accounts.9b00544] DOI Google Scholar	Deconstruction
2020	Wang, S., Sanford, G.R., Robertson, P., Jackson, R.D. & Thelen, K.D. "Perennial bioenergy crop yield and quality response to nitrogen fertilization." BioEnergy Research 13, 157-166+ (2020). [DOI: 10.1007/s12155-019-10072-z] DOI Google Scholar
2020	Xu, J., Roley, S.S., Tfaily, M.M., Chu, R.K. & Tiedje, J.M. "Organic amendments change soil organic C structure and microbial community but not total organic matter on sub-decadal scales." Soil Biology and Biochemistry 150, 107986+ (2020). [DOI: 10.1016/j.soilbio.2020.107986] DOI Google Scholar	Sustainability
2020	Yamamoto, M., Tomiyama, H., Koyama, A., Okuizumi, H., Liu, S., Vanholme, R., Goeminne, G., Hirai, Y., Shi, H., Nuoendagula, N., et al. "A century-old mystery unveiled: Sekizaisou is a natural lignin mutant." Plant Physiology 182, 1821-1828+ (2020). [DOI: 10.1104/pp.19.01467] DOI Google Scholar
2020	Yu, L., Harris, E., Lewicka-Szczebak, D., Barthel, M., Bloomberg, M.R.A., Harris, S.J., Johnson, M.S., Lehmann, M.F., Liisberg, J., Muller, C., et al. "What can we learn from N2O isotope data? – analytics, processes and modelling." Rapid Communications in Mass Spectrometry 34,20, (2020). [DOI: 10.1002/rcm.8858] DOI Google Scholar
2020	Zhang, Y., Haan, N.L. & Landis, D.A. "Landscape composition and configuration have scale-dependent effects on agricultural pest suppression." Agriculture, Ecosystems & Environment 302, 107085+ (2020). [DOI: 10.1016/j.agee.2020.107085] DOI Google Scholar	Sustainability
2020	Zhang, Y., Serate, J., Xie, D., Gajbhiye, S., Kulzer, P., Sanford, G., Russell, J.D., McGee, M., Foster, C., Coon, J.J., et al. "Production of hydrolysates from unmilled AFEX-pretreated switchgrass and comparative fermentation with Zymomonas mobilis." Bioresource Technology Reports 11, 100517+ (2020). [DOI: 10.1016/j.biteb.2020.100517] DOI Google Scholar
2020	Zheng, H., Kim, K., Kravchenko, A., Rivers, M. & Guber, A. "Testing Os staining approach for visualizing soil organic matter patterns in intact samples via X-ray dual-energy tomography scanning." Environmental Science & Technology 54, 8980-8989+ (2020). [DOI: 10.1021/acs.est.0c01028] DOI Google Scholar
2020	Zhou, Y., Klinger, G.E., Hegg, E.L., Saffron, C.M. & Jackson, J.E. "Multiple mechanisms mapped in aryl alkyl ether cleavage via aqueous electrocatalytic hydrogenation over skeletal nickel." Journal of the American Chemical Society 142,8, 4037-4050+ (2020). [DOI: 10.1021/jacs.0c00199] DOI Google Scholar	Conversion
2020	Zhu, X., Jackson, R.D., DeLucia, E.H., Tiedje, J.M. & Liang, C. "The soil microbial carbon pump: from conceptual insights to empirical assessments." Global Change Biology 26,11, 6032-6039+ (2020). [DOI: 10.1111/gcb.15319] DOI Google Scholar	Sustainability
2019	Abraha, M., Gelfand, I., Hamilton, S.K., Chen, J. & Robertson, P. "Carbon debt of field-scale conservation reserve program grasslands converted to annual and perennial bioenergy crops." Environmental Research Letters 14,2, 024019+ (2019). [DOI: 10.1088/1748-9326/aafc10] DOI Google Scholar	Sustainability
2019	Agarwal, U.P., Ralph, S.A., Padmakshan, D., Liu, S. & Foster, C.E. "Estimation of syringyl units in wood lignins by FT-Raman spectroscopy." Journal of Agricultural and Food Chemistry 67,15, 4367-4374+ (2019). [DOI: 10.1021/acs.jafc.8b06707] DOI Google Scholar	Feedstocks
2019	Ando, D. & Ralph, J. "Method to regioselectively iodine-tag free-phenolic aromatic endgroups in lignin for 1H–13C-HSQC NMR analysis." ACS Sustainable Chemistry & Engineering 7, 18624-18629+ (2019). [DOI: 10.1021/acssuschemeng.9b04981] DOI Google Scholar
2019	Avci, U., Zhou, X., Pattathil, S., Sousa, L. da C., Hahn, M.G., Dale, B., Xu, Y. & Balan, V. "Effects of extractive ammonia pretreatment on the ultrastructure and gllycan composition of corn stover." Frontiers in Energy Research 7, 85+ (2019). [DOI: 10.3389/fenrg.2019.00085] DOI Google Scholar	Deconstruction