Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2020	Azodi, C.B., Pardo, J., VanBuren, R., Campos, G. de L. & Shiu, S.-H. "Transcriptome-based prediction of complex traits in maize." The Plant Cell 32, 139-151+ (2020). [DOI: 10.1105/tpc.19.00332] DOI Google Scholar
2020	Azodi, C.B., Tang, J. & Shiu, S.-H. "Opening the black box: interpretable machine learning for geneticists." Trends in Genetics 36,6, 442-455+ (2020). [DOI: 10.1016/j.tig.2020.03.005] DOI Google Scholar
2020	Banerjee, R., Weisenhorn, E., Schwartz, K.J., Myers, K.S., Glasner, J.D., Perna, N.T., Coon, J.J., Welch, R.A. & Kiley, P.J. "Tailoring a global iron regulon to a uropathogen." mBio 11,2, (2020). [DOI: 10.1128/mBio.00351-20] DOI Google Scholar
2020	Banta, A.B., Enright, A.L., Siletti, C. & Peters, J.M. "A high-efficacy CRISPR interference system for gene function discovery in Zymomonas mobilis." Applied and Environmental Microbiology 86,23, (2020). [DOI: 10.1128/AEM.01621-20] DOI Google Scholar
2020	Banta, A.B., Ward, R.D., Tran, J.S., Bacon, E.E. & Peters, J.M. "Programmable gene knockdown in diverse bacteria using mobile-CRISPRi." Current Protocols in Microbiology 59,1, (2020). [DOI: 10.1002/cpmc.130] DOI Google Scholar
2020	Bao, Y., Song, W.-M., Wang, P., Yu, X., Li, B., Jiang, C., Shiu, S.-H., Zhang, H. & Bassham, D.C. "COST1 regulates autophagy to control plant drought tolerance." Proceedings of the National Academy of Sciences of the United States of America 117,13, 7482-7493+ (2020). [DOI: 10.1073/pnas.1918539117] DOI Google Scholar	Sustainability
2020	Benucci, G.M.N., Rennick, B. & Bonito, G. "Patient propagules: Do soil archives preserve the legacy of fungal and prokaryotic communities?" PLOS ONE 15,8, (2020). [DOI: 10.1371/journal.pone.0237368] DOI Google Scholar	Sustainability
2020	Bhandari, D.D. & Brandizzi, F. "Plant endomembranes and cytoskeleton: moving targets in immunity." Current Opinion in Plant Biology 58, 8-16+ (2020). [DOI: 10.1016/j.pbi.2020.09.003] DOI Google Scholar	Feedstocks
2020	Bilyera, N., Kuzyakova, I., Guber, A., Razavi, B.S. & Kuzyakov, Y. "How “hot” are hotspots: statistically localizing the high-activity areas on soil and rhizosphere images." Rhizosphere 16, 100259+ (2020). [DOI: 10.1016/j.rhisph.2020.100259] DOI Google Scholar
2020	Chang, H., Bajaj, I., Huber, G.W., Maravelias, C.T. & Dumesic, J.A. "Catalytic strategy for conversion of fructose to organic dyes, polymers, and liquid fuels." Green Chemistry 22, 5285-5295+ (2020). [DOI: 10.1039/D0GC01576H] DOI Google Scholar
2020	Chang, H., Huber, G.W. & Dumesic, J.A. "Chemical-switching strategy for synthesis and controlled release of norcantharimides from a biomass-derived chemical." ChemSusChem 13,19, 5213-5219+ (2020). [DOI: 10.1002/cssc.202001471] DOI Google Scholar
2020	Chew, A.K., Jiang, S., Zhang, W., Zavala, V.M. & Van Lehn, R.C. "Fast predictions of liquid-phase acid-catalyzed reaction rates using molecular dynamics simulations and convolutional neural networks." Chemical Science 11, 12464-12476+ (2020). [DOI: 10.1039/D0SC03261A] DOI Google Scholar
2020	Chew, A.K., Walker, T.W., Shen, Z., Demir, B., Witteman, L., Euclide, J., Huber, G.W., Dumesic, J.A. & Van Lehn, R.C. "Effect of mixed-solvent environments on the selectivity of acid-catalyzed dehydration reactions." ACS Catalysis 10, 1679-1691+ (2020). [DOI: 10.1021/acscatal.9b03460] DOI Google Scholar
2020	Chundawat, S.P.S., Pal, R.K., Zhao, C., Campbell, T., Teymouri, F., Videto, J., Nielson, C., Wieferich, B., Sousa, L., Dale, B.E., et al. "Ammonia fiber expansion (AFEX) pretreatment of lignocellulosic biomass." Journal of Visualized Experiments 158, (2020). [DOI: 10.3791/57488] DOI Google Scholar	Deconstruction
2020	Dahlin, K.M., Akanga, D., Lombardozzi, D.L., Reed, D.E., Shirkey, G., Lei, C., Abraha, M. & Chen, J. "Challenging a global land surface model in a local socio-environmental system." Land 9, 398+ (2020). [DOI: 10.3390/land9100398] DOI Google Scholar	Sustainability
2020	De Meester, B., Calderón, B.M., de Vries, L., Pollier, J., Goeminne, G., Van Doorsselaere, J., Chen, M., Ralph, J., Vanholme, R. & Boerjan, W. "Tailoring poplar lignin without yield penalty by combining a null and haploinsufficient CINNAMOYL-CoA REDUCTASE2 allele." Nature Communications 11,1, 5020+ (2020). [DOI: 10.1038/s41467-020-18822-w] DOI Google Scholar
2020	del Rio, J.C., Rencoret, J., Gutiérrez, A., Elder, T., Kim, H. & Ralph, J. "Lignin monomers from beyond the canonical monolignol biosynthetic pathway: another brick in the wall." ACS Sustainable Chemistry & Engineering 8,13, 4997-5012+ (2020). [DOI: 10.1021/acssuschemeng.0c01109] DOI Google Scholar
2020	Demir, B., Kropp, T., Rivera-Dones, K.R., Gilcher, E.B., Huber, G.W., Mavrikakis, M. & Dumesic, J.A. "A self-adjusting platinum surface for acetone hydrogenation." Proceedings of the National Academy of Sciences of the United States of America 117,7, 3446-3450+ (2020). [DOI: 10.1073/pnas.1917110117] DOI Google Scholar
2020	Dharampal, P.S., Diaz-Garcia, L., Haase, M.A.B., Zalapa, J., Currie, C.R., Hittinger, C.T. & Steffan, S.A. "Microbial diversity associated with the pollen stores of captive-bred bumble bee colonies." Insects 11,4, 250+ (2020). [DOI: 10.3390/insects11040250] DOI Google Scholar
2020	Dirks, A.C. & Jackson, R.D. "Community structure of arbuscular mycorrhizal fungi in soils of switchgrass harvested for bioenergy." Applied and Environmental Microbiology 86,19, (2020). [DOI: 10.1128/AEM.00880-20] DOI Google Scholar	Sustainability
2020	Doud, D.F.R., Bowers, R.M., Schulz, F., De Raad, M., Deng, K., Tarver, A., Glasgow, E., Meulen, K.V., Fox, B., Deutsch, S., et al. "Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere." The ISME Journal 14, 659-675+ (2020). [DOI: 10.1038/s41396-019-0557-y] DOI Google Scholar	Deconstruction
2020	Elder, T., del Rio, J.C., Ralph, J., Rencoret, J., Kim, H., Beckham, G.T. & Crowley, M.F. "Coupling and reactions of lignols and new lignin monomers: a density functional theory study." ACS Sustainable Chemistry & Engineering 8,30, 11033–11045+ (2020). [DOI: 10.1021/acssuschemeng.0c02880] DOI Google Scholar
2020	Emery, S.M., Stahlheber, K.A. & Gross, K.L. "Drought minimized nitrogen fertilization effects on bioenergy feedstock quality." Biomass and Bioenergy 133, 105452+ (2020). [DOI: 10.1016/j.biombioe.2019.105452] DOI Google Scholar	Sustainability
2020	Eugene, A., Lapierre, C. & Ralph, J. "Improved analysis of arabinoxylan-bound hydroxycinnamate conjugates in grass cell walls." Biotechnology for Biofuels 13,1, 202+ (2020). [DOI: 10.1186/s13068-020-01841-6] DOI Google Scholar
2020	Fan, P., Wang, P., Lou, Y.-R., Leong, B.J., Moore, B.M., Schenck, C.A., Combs, R., Cao, P., Brandizzi, F., Shiu, S.-H., et al. "Evolution of a plant gene cluster in Solanaceae and emergence of metabolic diversity." eLife 9, (2020). [DOI: 10.7554/eLife.56717] DOI Google Scholar