Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2024	Harrison, M.-C., Opulente, D.A., Wolters, J.F., Shen, X.-X., Zhou, X., Groenewald, M., Hittinger, C.T., Rokas, A. & LaBella, A.L. "Exploring Saccharomycotina yeast ecology through an ecological ontology framework." Yeast 41,10, 615-628+ (2024). [DOI: 10.1002/yea.3981] DOI Google Scholar
2024	Harrison, M.-C., Ubbelohde, E.J., Labella, A.L., Opulente, D.A., Wolters, J.F., Zhou, X., Shen, X.-X., Groenewald, M., Hittinger, C.T. & Rokas, A. "Machine learning enables identification of an alternative yeast galactose utilization pathway." Proceedings of the National Academy of Sciences of the United States of America 121,18, (2024). [DOI: 10.1073/pnas.2315314121] DOI Google Scholar
2024	Hoang, D.Q., Wilson, L.R., Scheftgen, A.J., Suen, G. & Currie, C.R. "Disturbance-diversity relationships of microbial communities change based on growth substrate." mSystems 9,2, (2024). [DOI: 10.1128/msystems.00887-23] DOI Google Scholar
2024	Hurt, A., Bibik, J.D., Martinez-Gomez, N.C. & Hamberger, B. "Engineering terpene production pathways in Methylobacterium extorquens AM1." Microorganisms 12,3, 500+ (2024). [DOI: 10.3390/microorganisms12030500] DOI Google Scholar
2024	Jamieson, Z., Clar, J.F. & Runge, T. "Cellulose nanofibers as rheological modifiers to improve biomass slurry processing and fermentation." Fermentation 10, 626+ (2024). [DOI: 10.3390/ fermentation10120626] DOI Google Scholar
2024	Jiao, Y., Nigam, D., Barry, K., Daum, C., Yoshinaga, Y., Lipzen, A., Khan, A., Parasa, S.-P., Wei, S., Lu, Z., et al. "A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes." The Plant Journal 117,5, 1543-1557+ (2024). [DOI: 10.1111/tpj.16582] DOI Google Scholar
2024	Karimzadegan, V., Koirala, M., Sobhanverdi, S., Merindol, N., Majhi, B.B., Gelinas, S.-E., Timokhin, V.I., Ralph, J., Dastmalchi, M. & Desgagne-Penix, I. "Characterization of cinnamate 4-hydroxylase (CYP73A) and p-coumaroyl 3'-hydroxylase (CYP98A) from Leucojum aestivum, a source of Amaryllidaceae alkaloids." Plant Physiology and Biochemistry 210, 108612+ (2024). [DOI: 10.1016/j.plaphy.2024.108612] DOI Google Scholar
2024	Karlen, S.D., Timokhin, V.I., Sener, C., Mobley, J.K., Runge, T. & Ralph, J. "Production of biomass-derived p-hydroxybenzamide: synthesis of p-aminophenol and paracetamol." ChemSusChem 17,8, (2024). [DOI: 10.1002/cssc.202400234] DOI Google Scholar
2024	Kfoury, B., Rodrigues, W.F.C., Kim, S.-J., Brandizzi, F. & Del-Bem, L.-E. "Multiple horizontal gene transfer events have shaped plant glycosyl hydrolase diversity and function." New Phytologist 242,2, 809-824+ (2024). [DOI: 10.1111/nph.19595] DOI Google Scholar
2024	Kim, B., Perez, J.M., Karlen, S.D., Coplien, J., Donohue, T.J. & Noguera, D.R. "Achieving high productivity of 2-pyrone-4,6-dicarboxylic acid from aqueous aromatic streams with Novosphingobium aromaticivorans." Green Chemistry 26,13, 7997-8009+ (2024). [DOI: 10.1039/D4GC01975J] DOI Google Scholar
2024	Kim, K., Juyal, A. & Kravchenko, A. "Soil pore characteristics and the fate of new switchgrass‐derived carbon in switchgrass and prairie bioenergy cropping systems." Scientific Reports 14, 7824+ (2024). [DOI: 10.1038/s41598-024-58444-6] DOI Google Scholar
2024	Kim, S., Dale, B.E. & Basso, B. "Uncertainties in greenhouse gas emission factors: a comprehensive analysis of switchgrass-based biofuel production." Global Change Biology – Bioenergy 16,8, (2024). [DOI: 10.1111/gcbb.13179] DOI Google Scholar
2024	Ko, D.K. & Brandizzi, F. "Dynamics of ER stress-induced gene regulation in plants." Nature Reviews Genetics 25, 513–525+ (2024). [DOI: 10.1038/s41576-024-00710-4] DOI Google Scholar
2024	Lakey, B., Alberge, F. & Donohue, T.J. "Insights into Alphaproteobacterial regulators of cell envelope remodeling." Current Opinion in Microbiology 81, 102538+ (2024). [DOI: 10.1016/j.mib.2024.102538] DOI Google Scholar
2024	Lam, L.P.Y., Tobimatsu, Y., Suzuki, S., Tanaka, T., Yamamoto, S., Takeda-Kimura, Y., Osakabe, Y., Osakabe, K., Ralph, J., Bartley, L.E., et al. "Disruption of p-coumaroyl-CoA:monolignol transferases in rice drastically alters lignin composition." Plant Physiology 194,2, 832-848+ (2024). [DOI: 10.1093/plphys/kiad549] DOI Google Scholar
2024	Lamb, A., Kurtz, E., Glenn, P., McKinley, B.A. & Mullet, J. "Bioenergy sorghum nodal root bud development: morphometric, transcriptomic and gene regulatory network analysis." Frontiers in Plant Science 15, 1456627+ (2024). [DOI: 10.3389/fpls.2024.1456627] DOI Google Scholar	Feedstocks bioenergy sorghum, nodal root buds, development, transcriptome, gene regulatory network
2024	Lancaster, N.M., Sinitcyn, P., Forny, P., Peters-Clarke, T.M., Fecher, C., Smith, A.J., Shishkova, E., Arrey, T.N., Pashkova, A., Robinson, M.L., et al. "Fast and deep phosphoproteome analysis with the Orbitrap Astral mass spectrometer." Nature Communications 15,1, 7016+ (2024). [DOI: 10.1038/s41467-024-51274-0] DOI Google Scholar
2024	Lee, J.H., Geers-Lucas, M., Guber, A.K. & Kravchenko, A.N. "Pore structures in detritusphere of soils under switchgrass and restored prairie vegetation community." Land Degradation & Development 35,18, 5817-5829+ (2024). [DOI: 10.1002/ldr.5333] DOI Google Scholar
2024	Lee, J.H., Ulbrich, T.C., Geers-Lucas, M., Robertson, P., Guber, A.K. & Kravchenko, A.N. "Very fine roots differ among switchgrass (Panicum virgatum L.) cultivars and differentially affect soil pores and carbon processes." Soil Biology and Biochemistry 199, 109610+ (2024). [DOI: 10.1016/j.soilbio.2024.109610] DOI Google Scholar
2024	Lei, C., Chen, J., Ibáñez, I., Sciusco, P., Shirkey, G., Lei, M., Reich, P. & Robertson, P. "Albedo of crops as a nature-based climate solution to global warming." Environmental Research Letters 19,8, 084032+ (2024). [DOI: 10.1088/1748-9326/ad5fa2] DOI Google Scholar	Sustainability
2024	Li, J. & Van Lehn, R.C. "Effects of acid dissociation and ionic solutions on the aggregation of 2-pyrone-4,6-dicarboxylic acid." ACS Omega 9,39, 40759–40768+ (2024). [DOI: 10.1021/acsomega.4c05431] DOI Google Scholar
2024	Li, J., Van Lehn, R.C. & Maravelias, C.T. "An explainable classification framework for determining and understanding the suitability of solvent extraction for bioproduct recovery." ACS Sustainable Chemistry & Engineering 12,14, 5436–5446+ (2024). [DOI: 10.1021/acssuschemeng.3c07129] DOI Google Scholar
2024	Li, Z., Kravchenko, A.N., Cupples, A., Guber, A.K., Kuzyakov, Y., Robertson, P. & Blagodatskaya, E. "Composition and metabolism of microbial communities in soil pores." Nature Communications 15,1, 3578+ (2024). [DOI: 10.1038/s41467-024-47755-x] DOI Google Scholar
2024	Lindstrom, J.K., Peterson, C.A., Ciesielski, P.N., Ralph, J., Chen, M., Jakes, J.E., Johnston, P.A., Rollag, S.A. & Brown, R.C. "Structural and chemical changes in hardwood cell walls during early stages of flash pyrolysis." Frontiers in Energy Research 12, 1348464+ (2024). [DOI: 10.3389/fenrg.2024.1348464] DOI Google Scholar
2024	Liu, C., Zhou, X., Li, Y., Hittinger, C.T., Pan, R., Huang, J., Chen, X.-xin, Rokas, A., Chen, Y. & Shen, X.-X. "The influence of the number of tree searches on maximum likelihood inference in phylogenomics." Systematic Biology 73,5, 807–822+ (2024). [DOI: 10.1093/sysbio/syae031] DOI Google Scholar