Publications

Jang, S.-K., Kim, K.H., Unda, F., Mahon, E.L., Ralph, J. & Mansfield, S.D. "Genetically engineered poplar wood effectively enhances the efficiency of deep eutectic solvent-mediated one-pot processing." ChemSusChem 18,16, e2500891+ (2025). [DOI: 10.1002/cssc.202500891]

Jones, J.M., Benucci, G.M.N. & Evans, S.E. "Drought increases microbial allocation to stress tolerance but with few tradeoffs among community-level traits." Soil Biology and Biochemistry 205, 109787+ (2025). [DOI: 10.1016/j.soilbio.2025.109787]

Karaca-Bulut, M., Gonzales-Vigil, E., Muchero, W. & Mansfield, S.D. "Elucidating the drought-responsive changes in Poplar cuticular waxes: a GWAS analysis of genes involved in fatty acid biosynthesis." Tree Physiology 45,13, 6–20+ (2025). [DOI: 10.1093/treephys/tpaf060]

Cross, M.C.G., Aboulnaga, E. & TerAvest, M.A. "A small number of point mutations confer formate tolerance in Shewanella oneidensis." Applied and Environmental Microbiology 91,5, e01968–24+ (2025). [DOI: 10.1128/aem.01968-24]

Hall, B.W., Neri, J.C., Bingman, C.A., Vilbert, A.C., Eckmann, J.B., Myers, K.S., Sibert, B.S., Wright, E.R., Fox, B.G., Kiley, P.J., et al. "MarK, a Novosphingobium aromaticivorans kinase required for catabolism of multiple aromatic monomers." Journal of Biological Chemistry 301,10, 110606+ (2025). [DOI: 10.1016/j.jbc.2025.110606]

Hellinger, J., Ralph, J. & Karlen, S.D. "p‐Coumaroylated lignins are natively produced in three rosales families." ACS Omega 10,6, 6220–6227+ (2025). [DOI: 10.1021/acsomega.4c11429]

Hussain, M.Z., Hamilton, S.K., Basso, B. & Robertson, P. "Phosphorus budgets of intensively managed row crops at a long-term agroecosystem research site in the upper US Midwest." Journal of Environmental Quality 54,3, 720–731+ (2025). [DOI: 10.1002/jeq2.70000]

Im, J.H., Kim, W.-C., Han, K.-H. & Ko, J.-H. "XERICO as a target for engineering stress-resilient crops: mechanisms, applications, and future directions." Plant Physiology and Biochemistry 225, 110013+ (2025). [DOI: 10.1016/j.plaphy.2025.110013]

Im, J.H., Son, S., Jung, M.-Y., Ko, J.-H. & Han, K.-H. "MPK6-mediated phosphorylation destabilizes MYC2 and attenuates its transcriptional activity in jasmonate signaling." Plant Communications 6, 101465+ (2025). [DOI: 10.1016/j.xplc.2025.101465]

Indibi, A., Cao, P., Brandizzi, F., Mortimer, J., Swaminathan, K., Tsai, C.-J. & Hamberger, B. "Through the lens of bioenergy crops: advances, bottlenecks, and promises of plant engineering." The Plant Journal 123,2, e70294+ (2025). [DOI: 10.1111/tpj.70294]

Jang, S.-K., Kim, K.H., Unda, F., Mahon, E.L., Ralph, J. & Mansfield, S.D. "Genetically engineered poplar wood effectively enhances the efficiency of deep eutectic solvent-mediated one-pot processing." ChemSusChem 18,16, e2500891+ (2025). [DOI: 10.1002/cssc.202500891]

Jones, J.M., Benucci, G.M.N. & Evans, S.E. "Drought increases microbial allocation to stress tolerance but with few tradeoffs among community-level traits." Soil Biology and Biochemistry 205, 109787+ (2025). [DOI: 10.1016/j.soilbio.2025.109787]

Karaca-Bulut, M., Gonzales-Vigil, E., Muchero, W. & Mansfield, S.D. "Elucidating the drought-responsive changes in Poplar cuticular waxes: a GWAS analysis of genes involved in fatty acid biosynthesis." Tree Physiology 45,13, 6–20+ (2025). [DOI: 10.1093/treephys/tpaf060]

Bandopadhyay, S., Li, X., Bowsher, A.W., Last, R.L. & Shade, A. "Disentangling plant- and environment-mediated drivers of active rhizosphere bacterial community dynamics during short-term drought." Nature Communications 15,1, 6347+ (2024). [DOI: 10.1038/s41467-024-50463-1]

Banerjee, R., Askenasy, I., Mettert, E.L. & Kiley, P.J. "Iron-sulfur Rrf2 transcription factors: an emerging versatile platform for sensing stress." Current Opinion in Microbiology 82, 102543+ (2024). [DOI: 10.1016/j.mib.2024.102543]

Barros, K.O., Mader, M., Krause, D.J., Pangilinan, J., Andreopoulos, B., Lipzen, A., Mondo, S.J., Grigoriev, I.V., Rosa, C.A., Sato, T.K., et al. "Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces." Biotechnology for Biofuels and Bioproducts 17,1, 20+ (2024). [DOI: 10.1186/s13068-024-02467-8]

Bhandari, D.D. & Brandizzi, F. "Logistics of defense: the contribution of endomembranes to plant innate immunity." Journal of Cell Biology 223,6, e202307066+ (2024). [DOI: 10.1083/jcb.202307066]

Bibik, J.D., Bryson, A.E. & Hamberger, B. "Compartmentalized terpenoid production in plants using Agrobacterium-mediated transient expression." in Synthetic Biology. Methods in Molecular Biology. vols. 2760 21–34+ (Humana, 2024). [DOI: 10.1007/978-1-0716-3658-9_2]

Bibik, J.D. & Hamberger, B. "Plant engineering to enable platforms for sustainable bioproduction of terpenoids." in Synthetic Biology. Methods in Molecular Biology. vols. 2760 3–20+ (Humana, 2024). [DOI: 10.1007/978-1-0716-3658-9_1]

Bibik, J.D., Sahu, A., Kim, B., Unda, F., Andersen, T.B., Mansfield, S.D., Maravelias, C.T., Sharkey, T.D. & Hamberger, B.R. "Engineered poplar for bioproduction of the triterpene squalene." Plant Biotechnology Journal 22,8, 2301–2311+ (2024). [DOI: 10.1111/pbi.14345]

Bourmaud, C.L., Bertella, S., Rico, A.B., Karlen, S.D., Ralph, J. & Luterbacher, J. "Quantification of native lignin structural features with gel-phase 2D-HSQC0 reveals lignin structural changes during extraction." Angewandte Chemie International Edition 63,31, e202404442+ (2024). [DOI: 10.1002/anie.202404442]

Bujanovic, B.M., Hirth, K., Ralph, S., Reiner, R.S., Dongre, P., Mickles, C., Karlen, S.D., Baez, C. & Clemons, C. "Use of renewable alcohols in autocatalytic production of aspen organosolv lignins." ACS Omega 9,36, 38227–38247+ (2024). [DOI: 10.1021/acsomega.4c05981]

Chandrasekar, M., Collins, J.L., Habibi, S. & Ong, R.G. "Microfluidic reactor designed for time-lapsed imaging of pretreatment and enzymatic hydrolysis of lignocellulosic biomass." Bioresource Technology 393, 129989+ (2024). [DOI: 10.1016/j.biortech.2023.129989]

Chavez, C.M., Groenewald, M., Hulfachor, A.B., Kpurubu, G., Huerta, R., Hittinger, C.T. & Rokas, A. "The cell morphological diversity of Saccharomycotina yeasts." FEMS Yeast Research 24, foad055+ (2024). [DOI: 10.1093/femsyr/foad055]

Chen, J., Lei, C., Chu, H., Li, X., Torn, M., Wang, Y.-P., Sciusco, P. & Robertson, P. "Overlooked cooling effects of albedo in terrestrial ecosystems." Environmental Research Letters 19,9, 093001+ (2024). [DOI: 10.1088/1748-9326/ad661d]