Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2024	Bandopadhyay, S., Li, X., Bowsher, A.W., Last, R.L. & Shade, A. "Disentangling plant- and environment-mediated drivers of active rhizosphere bacterial community dynamics during short-term drought." Nature Communications 15,1, 6347+ (2024). [DOI: 10.1038/s41467-024-50463-1] DOI Google Scholar
2024	Banerjee, R., Askenasy, I., Mettert, E.L. & Kiley, P.J. "Iron-sulfur Rrf2 transcription factors: an emerging versatile platform for sensing stress." Current Opinion in Microbiology 82, 102543+ (2024). [DOI: 10.1016/j.mib.2024.102543] DOI Google Scholar
2024	Barros, K.O., Mader, M., Krause, D.J., Pangilinan, J., Andreopoulos, B., Lipzen, A., Mondo, S.J., Grigoriev, I.V., Rosa, C.A., Sato, T.K., et al. "Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces." Biotechnology for Biofuels and Bioproducts 17,1, 20+ (2024). [DOI: 10.1186/s13068-024-02467-8] DOI Google Scholar
2024	Bhandari, D.D. & Brandizzi, F. "Logistics of defense: the contribution of endomembranes to plant innate immunity." Journal of Cell Biology 223,6, (2024). [DOI: 10.1083/jcb.202307066] DOI Google Scholar
2024	Bibik, J.D., Bryson, A.E. & Hamberger, B. "Compartmentalized terpenoid production in plants using Agrobacterium-mediated transient expression." in Synthetic Biology. Methods in Molecular Biology. vol. 2760 21-34+ (Humana, 2024). [DOI: 10.1007/978-1-0716-3658-9_2] DOI Google Scholar
2024	Bibik, J.D. & Hamberger, B. "Plant engineering to enable platforms for sustainable bioproduction of terpenoids." in Synthetic Biology. Methods in Molecular Biology. vol. 2760 3-20+ (Humana, 2024). [DOI: 10.1007/978-1-0716-3658-9_1] DOI Google Scholar
2024	Bibik, J.D., Sahu, A., Kim, B., Unda, F., Andersen, T.B., Mansfield, S.D., Maravelias, C.T., Sharkey, T.D. & Hamberger, B.R. "Engineered poplar for bioproduction of the triterpene squalene." Plant Biotechnology Journal 22,8, 2301-2311+ (2024). [DOI: 10.1111/pbi.14345] DOI Google Scholar
2024	Bourmaud, C.L., Bertella, S., Rico, A.B., Karlen, S.D., Ralph, J. & Luterbacher, J. "Quantification of native lignin structural features with gel-phase 2D-HSQC0 reveals lignin structural changes during extraction." Angewandte Chemie International Edition 63,31, (2024). [DOI: 10.1002/anie.202404442] DOI Google Scholar
2024	Bujanovic, B.M., Hirth, K., Ralph, S., Reiner, R.S., Dongre, P., Mickles, C., Karlen, S.D., Baez, C. & Clemons, C. "Use of renewable alcohols in autocatalytic production of aspen organosolv lignins." ACS Omega 9,36, 38227-38247+ (2024). [DOI: 10.1021/acsomega.4c05981] DOI Google Scholar
2024	Chandrasekar, M., Collins, J.L., Habibi, S. & Ong, R.G. "Microfluidic reactor designed for time-lapsed imaging of pretreatment and enzymatic hydrolysis of lignocellulosic biomass." Bioresource Technology 393, 129989+ (2024). [DOI: 10.1016/j.biortech.2023.129989] DOI Google Scholar
2024	Chavez, C.M., Groenewald, M., Hulfachor, A.B., Kpurubu, G., Huerta, R., Hittinger, C.T. & Rokas, A. "The cell morphological diversity of Saccharomycotina yeasts." FEMS Yeast Research 24, (2024). [DOI: 10.1093/femsyr/foad055] DOI Google Scholar
2024	Chen, J., Lei, C., Chu, H., Li, X., Torn, M., Wang, Y.-P., Sciusco, P. & Robertson, P. "Overlooked cooling effects of albedo in terrestrial ecosystems." Environmental Research Letters 19,9, 093001+ (2024). [DOI: 10.1088/1748-9326/ad661d] DOI Google Scholar
2024	Chen, J., U, K.T.P., North, M. & Franklin, J.F. "The contributions of microclimatic information in advancing ecosystem science." Agricultural and Forest Meteorology 355, 110105+ (2024). [DOI: 10.1016/j.agrformet.2024.110105] DOI Google Scholar
2024	Chipkar, S., Kahmark, K., Bohm, S., Hussain, M.Z., Joshi, L., Krieg, K.M., Aguado, J., Cassidy, J., Lozano, P., Garland, K., et al. "High temperatures and low soil moisture synergistically reduce switchgrass yields from marginal field sites and inhibit fermentation." Global Change Biology – Bioenergy 16,2, (2024). [DOI: 10.1111/gcbb.13119] DOI Google Scholar
2024	Conley, E., Wadler, C.S., Bell, B.A., Lucier, I., Haynie, C., Eldred, S., Nguyen, V., Bugni, T.S. & Thomas, M.G. "Directed evolution of an adenylation domain alters substrate specificity and generates a new catechol siderophore in Escherichia coli." Biochemistry 63,23, 3126-3135+ (2024). [DOI: 10.1021/acs.biochem.4c00499] DOI Google Scholar
2024	Crandall, J.G., Zhou, X., Rokas, A. & Hittinger, C.T. "Specialization restricts the evolutionary paths available to yeast sugar transporters." Molecular Biology and Evolution 41,11, (2024). [DOI: 10.1093/molbev/msae228] DOI Google Scholar
2024	Crowther, T.W., Rappuoli, R., Corinaldesi, C., Danovaro, R., Donohue, T.J., Huisman, J., Stein, L.Y., Timmis, J.K., Timmis, K., Anderson, M.Z., et al. "Scientists' call to action: microbes, planetary health, and the sustainable development goals." Cell 187,19, 5195-5216+ (2024). [DOI: 10.1016/j.cell.2024.07.051] DOI Google Scholar
2024	Cui, Y., Weeda, E.P., Omolabake, S., Karlen, S.D., Holland, C.M. & Stahl, S.S. "Oxidative catalytic fractionation of lignocellulosic biomass using a Co-N-P-C catalyst and one-step isolation of aromatic monomers via centrifugal partition chromatography." ACS Sustainable Chemistry & Engineering 12,26, 9795–9804+ (2024). [DOI: 10.1021/acssuschemeng.4c02120] DOI Google Scholar
2024	David, K.T., Harrison, M.-C., Opulente, D.A., Labella, A.L., Wolters, J.F., Zhou, X., Shen, X.-X., Groenewald, M., Pennell, M., Hittinger, C.T., et al. "Saccharomycotina yeasts defy long-standing macroecological patterns." Proceedings of the National Academy of Sciences of the United States of America 121,10, (2024). [DOI: 10.1073/pnas.2316031121] DOI Google Scholar
2024	Doron, L., Raval, D. & Kerfeld, C.A. "Towards using bacterial microcompartments as a platform for spatial metabolic engineering in the industrially important and metabolically versatile Zymomonas mobilis." Frontiers in Bioengineering and Biotechnology 12, 1344260+ (2024). [DOI: 10.3389/fbioe.2024.1344260] DOI Google Scholar
2024	Durant, C., Bhasin, A., Juenger, T.E. & Heckman, R.W. "Genetically correlated leaf tensile and morphological traits are driven by growing season length in a widespread perennial grass." American Journal of Botany 111,5, (2024). [DOI: 10.1002/ajb2.16349] DOI Google Scholar
2024	Fu, J., McKinley, B., James, B., Chrisler, W., Markillie, L.M., Gaffrey, M.J., Mitchell, H.D., Riaz, M.R., Marcial, B., Orr, G., et al. "Cell-type-specific transcriptomics uncovers spatial regulatory networks in bioenergy sorghum stems." The Plant Journal 118,5, 1668-1688+ (2024). [DOI: 10.1111/tpj.16690] DOI Google Scholar
2024	Geissler, C.H., Ryu, J. & Maravelias, C.T. "The future of biofuels in the United States transportation sector." Renewable and Sustainable Energy Reviews 192, 114276+ (2024). [DOI: 10.1016/j.rser.2023.114276] DOI Google Scholar
2024	Goncalves, C., Harrison, M.-C., Steenwyk, J.L., Opulente, D.A., Labella, A.L., Wolters, J.F., Zhou, X., Shen, X.-X., Groenewald, M., Hittinger, C.T., et al. "Diverse signatures of convergent evolution in cactus-associated yeasts." PLOS Biology 22,9, (2024). [DOI: 10.1371/journal.pbio.3002832] DOI Google Scholar
2024	Goncalves, C., Hittinger, C.T. & Rokas, A. "Horizontal gene transfer in fungi and its ecological importance." in Fungal Associations. vol. 9 59-81+ (Springer, 2024). [DOI: 10.1007/978-3-031-41648-4_3] DOI Google Scholar