Publications

Myers, K.S., Lal, P.B., Noguera, D.R. & Donohue, T.J. "Using genome scale mutant libraries to identify essential genes." in Methods in Molecular Biology. vols. 2377 215–236+ (Humana, 2022). [DOI: 10.1007/978-1-0716-1720-5_12]

Napier, J.D., Grabowski, P.P., Lovell, J.T., Bonnette, J., Mamidi, S., Gomez-Hughes, M.J., VanWallendael, A., Weng, X., Handley, L.H., Kim, M.K., et al. "A generalist–specialist trade-off between switchgrass cytotypes impacts climate adaptation and geographic range." Proceedings of the National Academy of Sciences of the United States of America 119,15, e2118879119+ (2022). [DOI: 10.1073/pnas.2118879119]

Noble, J.A., Bielski, N., V, Liu, M.-C.J., DeFalco, T.A., Stegmann, M., Nelson, A.D.L., McNamara, K., Sullivan, B., Dinh, K.K., Khuu, N., et al. "Evolutionary analysis of the LORELEI gene family in plants reveals regulatory subfunctionalization." Plant Physiology 190,4, 2539–2556+ (2022). [DOI: 10.1093/plphys/kiac444]

Noble, J.A., Seddon, A., Uygun, S., Bright, A., Smith, S.E., Shiu, S.-H. & Palanivelu, R. "The SEEL motif and members of the MYB-related REVEILLE transcription factor family are important for the expression of LORELEI in the synergid cells of the Arabidopsis female gametophyte." Plant Reproduction 35,1, 61–76+ (2022). [DOI: 10.1007/s00497-021-00432-1]

O’Neill, E.G., Martinez-Feria, R.A., Basso, B. & Maravelias, C.T. "Integrated spatially explicit landscape and cellulosic biofuel supply chain optimization under biomass yield uncertainty." Computers & Chemical Engineering 160, 107724+ (2022). [DOI: 10.1016/j.compchemeng.2022.107724]

Ohnuki, S., Ogawa, I., Itto-Nakama, K., Lu, F., Ranjan, A., Kabbage, M., Gebre, A.A., Yamashita, M., Li, S.C., Yashiroda, Y., et al. "High-throughput platform for yeast morphological profiling predicts the targets of bioactive compounds." npj Systems Biology Applications 8,1, 3+ (2022). [DOI: 10.1038/s41540-022-00212-1]

Padmakshan, D., Timokhin, V.I., Lu, F., Schatz, P.F., Vanholme, R., Boerjan, W. & Ralph, J. "Synthesis of hydroxycinnamoyl shikimates and their role in monolignol biosynthesis." Holzforschung 76,2, 133–144+ (2022). [DOI: 10.1515/hf-2021-0149]

Pan, D., Gelfand, I., Tao, L., Abraha, M., Sun, K., Guo, X., Chen, J., Robertson, P. & Zondlo, M.A. "A new open-path eddy covariance method for nitrous oxide and other trace gases that minimizes temperature corrections." Global Change Biology 28,4, 1446–1457+ (2022). [DOI: 10.1111/gcb.15986]

Perez, J.M., Sener, C., Misra, S., Umana, G.E., Coplien, J., Haak, D., Li, Y., Maravelias, C.T., Karlen, S.D., Ralph, J., et al. "Integrating lignin depolymerization with microbial funneling processes using agronomically relevant feedstocks." Green Chemistry 24,7, 2795–2811+ (2022). [DOI: 10.1039/D1GC03592D]

Ranaweera, T., Brown, B.N., Wang, P. & Shiu, S.-H. "Temporal regulation of cold transcriptional response in switchgrass." Frontiers in Plant Science 13, 998400+ (2022). [DOI: 10.3389/fpls.2022.998400]

Rencoret, J., Rosado, M.J., Kim, H., Timokhin, V.I., Gutiérrez, A., Bausch, F., Rosenau, T., Potthast, A., Ralph, J. & del Río, J.C. "Flavonoids naringenin chalcone, naringenin, dihydrotricin, and tricin are lignin monomers in papyrus." Plant Physiology 188,1, 208–219+ (2022). [DOI: 10.1093/plphys/kiab469]

Robertson, P., Hamilton, S.K., Paustian, K. & Smith, P. "Land-based climate solutions for the United States." Global Change Biology 28,16, 4912–4919+ (2022). [DOI: 10.1111/gcb.16267]

Sakai, S. & Rothamer, D. "Relative particle emission tendencies of 2-methyl-3-buten-2-ol–gasoline, isobutanol–gasoline, and ethanol–gasoline blends from premixed combustion in a spark-ignition engine." Fuel 324, 124638+ (2022). [DOI: 10.1016/j.fuel.2022.124638]

Sanford, G., Jackson, R.D., Rui, Y. & Kucharik, C.J. "Land use-land cover gradient demonstrates the importance of perennial grasslands with intact soils for building soil carbon in the fertile Mollisols of the North Central US." Geoderma 418, 115854+ (2022). [DOI: 10.1016/j.geoderma.2022.115854]

Scarborough, M.J., Myers, K.S., Fortney, N.W., Ingle, A.T., Donohue, T.J. & Noguera, D.R. "Metagenome-assembled genomes from a microbiome converting xylose to medium-chain carboxylic acids." Microbiology Resource Announcements 11,4, e01151–21+ (2022). [DOI: 10.1128/mra.01151-21]

Sciusco, P., Chen, J., Giannico, V., Abraha, M., Lei, C., Shirkey, G., Yuan, J. & Robertson, P. "Albedo-induced global warming impact at multiple temporal scales within an Upper Midwest USA watershed." Land 11,2, 283+ (2022). [DOI: 10.3390/land11020283]

Shirkey, G., John, R., Chen, J., Dahlin, K., Abraha, M., Sciusco, P., Lei, C. & Reed, D.E. "Fine resolution remote sensing spectra improves estimates of gross primary production of croplands." Agricultural and Forest Meteorology 326, 109175+ (2022). [DOI: 10.1016/j.agrformet.2022.109175]

Shuai, G. & Basso, B. "Subfield maize yield prediction improves when in-season crop water deficit is included in remote sensing imagery-based models." Remote Sensing of Environment 272, 112938+ (2022). [DOI: 10.1016/j.rse.2022.112938]

Smith, R.A., Beebe, E.T., Bingman, C.A., Meulen, K.V., Eugene, A., Steiner, A.J., Karlen, S.D., Ralph, J. & Fox, B.G. "Identification and characterization of a set of monocot BAHD monolignol transferases." Plant Physiology 189,1, 37–48+ (2022). [DOI: 10.1093/plphys/kiac035]

Smith, R.A., Lu, F., Muro-Villanueva, F., Cusumano, J.C., Chapple, C. & Ralph, J. "Manipulation of lignin monomer composition combined with the introduction of monolignol conjugate biosynthesis leads to synergistic changes in lignin structure." Plant and Cell Physiology 63,6, 744–754+ (2022). [DOI: 10.1093/pcp/pcac031]

Spurley, W.J., Fisher, K.J., Langdon, Q.K., Buh, K.V., Jarzyna, M., Haase, M.A.B., Sylvester, K., Moriarty, R.V., Rodriguez, D., Sheddan, A., et al. "Substrate, temperature, and geographical patterns among nearly 2000 natural yeast isolates." Yeast 39,1-2, 55–68+ (2022). [DOI: 10.1002/yea.3679]

Steenwyk, J.L., Phillips, M.A., Yang, F., Date, S.S., Graham, T.R., Berman, J., Hittinger, C.T. & Rokas, A. "An orthologous gene coevolution network provides insight into eukaryotic cellular and genomic structure and function." Science Advances 8,18, eabn0105+ (2022). [DOI: 10.1126/sciadv.abn0105]

Sumer, Z. & Van Lehn, R.C. "Data-centric development of lignin structure-solubility relationships in deep eutectic solvents using molecular simulations." ACS Sustainable Chemistry & Engineering 10,31, 10144–10156+ (2022). [DOI: 10.1021/acssuschemeng.2c01375]

Taifan, G.S.P. & Maravelias, C.T. "Generalized optimization-based synthesis of membrane systems for multicomponent gas mixture separation." Chemical Engineering Science 252, 117482+ (2022). [DOI: 10.1016/j.ces.2022.117482]

Tejera, M., Boersma, N.N., Archontoulis, S.V., Miguez, F.E., VanLoocke, A. & Heaton, E.A. "Photosynthetic decline in aging perennial grass is not fully explained by leaf nitrogen." Journal of Experimental Botany 73,22, 7582–7595+ (2022). [DOI: 10.1093/jxb/erac382]