Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2022	Taifan, G.S.P. & Maravelias, C.T. "Generalized optimization-based synthesis of membrane systems for multicomponent gas mixture separation." Chemical Engineering Science 252, 117482+ (2022). [DOI: 10.1016/j.ces.2022.117482] DOI Google Scholar	Sustainability
2022	Tejera, M., Boersma, N.N., Archontoulis, S.V., Miguez, F.E., VanLoocke, A. & Heaton, E.A. "Photosynthetic decline in aging perennial grass is not fully explained by leaf nitrogen." Journal of Experimental Botany 73,22, 7582-7595+ (2022). [DOI: 10.1093/jxb/erac382] DOI Google Scholar	Sustainability
2022	Tiedge, K., Li, X., Merrill, A.T., Davisson, D., Chen, Y., Yu, P., Tantillo, D.J., Last, R.L. & Zerbe, P. "Comparative transcriptomics and metabolomics reveal specialized metabolite drought stress responses in switchgrass (Panicum virgatum)." New Phytologist 236,4, 1393-1408+ (2022). [DOI: 10.1111/nph.18443] DOI Google Scholar	Sustainability
2022	Tilhou, N.W. & Casler, M. "Genetic correlations between switchgrass performance in sward conditions and surrogate measures." Crop Science 62,4, 1511-1521+ (2022). [DOI: 10.1002/csc2.20767] DOI Google Scholar
2022	Tilhou, N.W. & Casler, M.D. "Surveying grassland islands: the genetics and performance of Appalachian switchgrass (Panicum virgatum L.) collections." Genetic Resources and Crop Evolution 69,3, 1039–1055+ (2022). [DOI: 10.1007/s10722-021-01282-6] DOI Google Scholar
2022	Tilhou, N.W. & Casler, M.D. "Biomass yield improvement in switchgrass through genomic prediction of flowering time." Global Change Biology – Bioenergy 14,9, 1023-1034+ (2022). [DOI: 10.1111/gcbb.12983] DOI Google Scholar
2022	Tilhou, N.W., Kaeppler, S.M. & Casler, M.D. "Strong parallel evidence of selection during switchgrass sward establishment in hybrid and lowland ecotypes." Grassland Research 1,1, 31-42+ (2022). [DOI: 10.1002/glr2.12007] DOI Google Scholar
2022	Trujillo, E.A., Hebert, A.S., Vazquez, J.C.R., Brademan, D.R., Tatli, M., Amador-Noguez, D., Meyer, J.G. & Coon, J.J. "Rapid targeted quantitation of protein overexpression with direct infusion shotgun proteome analysis (DISPA-PRM)." Analytical Chemistry 94,4, 1965-1973+ (2022). [DOI: 10.1021/acs.analchem.1c03243] DOI Google Scholar
2022	Ulbrich, T.C., Rivas-Ubach, A., Tiemann, L.K., Friesen, M.L. & Evans, S.E. "Plant root exudates and rhizosphere bacterial communities shift with neighbor context." Soil Biology and Biochemistry 172, 108753+ (2022). [DOI: 10.1016/j.soilbio.2022.108753] DOI Google Scholar	Sustainability
2022	Umana, G.E., Perez, J.M., Unda, F., Lin, C.-Y., Sener, C., Karlen, S.D., Mansfield, S.D., Eudes, A., Ralph, J., Donohue, T.J., et al. "Biological funneling of phenolics from transgenic plants engineered to express the bacterial 3-dehydroshikimate dehydratase (qsuB) gene." Frontiers in Chemical Engineering 4, 1036084+ (2022). [DOI: 10.3389/fceng.2022.1036084] DOI Google Scholar
2022	Unda, F., Mottiar, Y., Mahon, E.L., Karlen, S.D., Kim, K.H., Loque, D., Eudes, A., Ralph, J. & Mansfield, S.D. "A new approach to zip-lignin: 3,4-dihydroxybenzoate is compatible with lignification." New Phytologist 235,1, 234-246+ (2022). [DOI: 10.1111/nph.18136] DOI Google Scholar
2022	van Dijk, A.D.J., Shiu, S.-H. & de Ridder, D. "Editorial: artificial intelligence and machine learning applications in plant genomics and genetics." Frontiers in Artificial Intelligence 5, 959470+ (2022). [DOI: 10.3389/frai.2022.959470] DOI Google Scholar	Sustainability
2022	Vanacloig-Pedros, E., Fisher, K.J., Liu, L., Debrauske, D.J., Young, M.K.M., Place, M., Hittinger, C.T., Sato, T.K. & Gasch, A.P. "Comparative chemical genomic profiling across plant-based hydrolysate toxins reveals widespread antagonism in fitness contributions." FEMS Yeast Research 21,1, (2022). [DOI: 10.1093/femsyr/foac036] DOI Google Scholar
2022	VanWallendael, A., Benucci, G.M.N., da Costa, P.B., Fraser, L., Sreedasyam, A., Fritschi, F., Juenger, T.E., Lovell, J.T., Bonito, G. & Lowry, D.B. "Host genotype controls ecological change in the leaf fungal microbiome." PLOS Biology 20,8, (2022). [DOI: 10.1371/journal.pbio.3001681] DOI Google Scholar
2022	VanWallendael, A., Lowry, D.B. & Hamilton, J.A. "One hundred years into the study of ecotypes, new advances are being made through large-scale field experiments in perennial plant systems." Current Opinion in Plant Biology 66, 102152+ (2022). [DOI: 10.1016/j.pbi.2021.102152] DOI Google Scholar	Sustainability
2022	Wadler, C.S., Wolters, J.F., Fortney, N.W., Throckmorton, K.O., Zhang, Y., Miller, C.R., Schneider, R.M., Wendt-Pienkowski, E., Currie, C.R., Donohue, T.J., et al. "Utilization of lignocellulosic biofuel conversion residue by diverse microorganisms." Biotechnology for Biofuels and Bioproducts 15,1, 70+ (2022). [DOI: 10.1186/s13068-022-02168-0] DOI Google Scholar
2022	Walters, K.A., Myers, K.S., Wang, H., Fortney, N.W., Ingle, A.T., Scarborough, M.J., Donohue, T.J. & Noguera, D.R. "Metagenomes and metagenome-assembled genomes from microbial communities fermenting ultrafiltered milk permeate." Microbiology Resource Announcements 11,7, (2022). [DOI: 10.1128/mra.00293-22] DOI Google Scholar
2022	Wang, P., Meng, F., Donaldson, P., Horan, S., Panchy, N.L., Vischulis, E., Winship, E., Conner, J.K., Krysan, P.J., Shiu, S.-H., et al. "High-throughput measurement of plant fitness traits with an object detection method using Faster R-CNN." New Phytologist 234,4, 1521-1533+ (2022). [DOI: 10.1111/nph.18056] DOI Google Scholar
2022	Wang, P., Schumacher, A.M. & Shiu, S.-H. "Computational prediction of plant metabolic pathways." Current Opinion in Plant Biology 66, 102171+ (2022). [DOI: 10.1016/j.pbi.2021.102171] DOI Google Scholar	Sustainability
2022	Willick, I.R. & Lowry, D.B. "Cold acclimation threshold induction temperatures of switchgrass ecotypes grown under a long and short photoperiod." Physiologia Plantarum 174,6, (2022). [DOI: 10.1111/ppl.13812] DOI Google Scholar	Sustainability
2022	York, L.M., Cumming, J.R., Trusiak, A., Bonito, G., von Haden, A.C., Kalluri, U.C., Tiemann, L.K., Andeer, P.F., Blanc-Betes, E., Diab, J.H., et al. "Bioenergy underground: challenges and opportunities for phenotyping roots and the microbiome for sustainable bioenergycrop production." The Plant Phenome Journal 5,1, (2022). [DOI: 10.1002/ppj2.20028] DOI Google Scholar
2022	Yu, K.M.J., Oliver, J., McKinley, B., Weers, B., Fabich, H.T., Evetts, N., Conradi, M.S., Altobelli, S.A., Marshall-Colon, A. & Mullet, J. "Bioenergy sorghum stem growth regulation: intercalary meristem localization, development and gene regulatory network analysis." The Plant Journal 112,2, 476-492+ (2022). [DOI: 10.1111/tpj.15960] DOI Google Scholar
2022	Zahorec, A., Reid, M.L., Tiemann, L.K. & Landis, D.A. "Perennial grass bioenergy cropping systems: impacts on soil fauna and implications for soil carbon accrual." Global Change Biology – Bioenergy 14,1, 4-23+ (2022). [DOI: 10.1111/gcbb.12903] DOI Google Scholar
2022	Zhang, B., Munske, G.R., Timokhin, V.I., Ralph, J., Davydov, D.R., Vermerris, W., Sattler, S.E. & Kang, C.H. "Functional and structural insight into the flexibility of cytochrome P450 reductases from Sorghum bicolor and its implications for lignin composition." Journal of Biological Chemistry 298,4, 101761+ (2022). [DOI: 10.1016/j.jbc.2022.101761] DOI Google Scholar
2022	Zhang, L., MacQueen, A., Weng, X., Behrman, K.D., Bonnette, J., Reilley, J.L., Rouquette, F.M., Fay, P.A., Wu, Y., Fritschi, F.B., et al. "The genetic basis for panicle trait variation in switchgrass (Panicum virgatum)." Theoretical and Applied Genetics 135,8, 2577-2592+ (2022). [DOI: 10.1007/s00122-022-04096-x] DOI Google Scholar	Sustainability