Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2022	Mozzachiodi, S., Bai, F.-Y., Baldrian, P., Bell, G., Boundy-Mills, K., Buzzini, P., Cadez, N., Cubillos, F.A., Dashko, S., Dimitrov, R., et al. "Yeasts from temperate forests." Yeast 39,1-2, 4-24+ (2022). [DOI: 10.1002/yea.3699] DOI Google Scholar
2022	Muro-Villanueva, F., Kim, H., Ralph, J. & Chapple, C. "H-lignin can be deposited independently of CINNAMYL ALCOHOL DEHYDROGENASE C and D in Arabidopsis." Plant Physiology 189,4, 2015-2028+ (2022). [DOI: 10.1093/plphys/kiac210] DOI Google Scholar
2022	Myers, K.S., Lal, P.B., Noguera, D.R. & Donohue, T.J. "Using genome scale mutant libraries to identify essential genes." in Methods in Molecular Biology. vol. 2377 215-236+ (Humana, 2022). [DOI: 10.1007/978-1-0716-1720-5_12] DOI Google Scholar
2022	Napier, J.D., Grabowski, P.P., Lovell, J.T., Bonnette, J., Mamidi, S., Gomez-Hughes, M.J., VanWallendael, A., Weng, X., Handley, L.H., Kim, M.K., et al. "A generalist–specialist trade-off between switchgrass cytotypes impacts climate adaptation and geographic range." Proceedings of the National Academy of Sciences of the United States of America 119,15, (2022). [DOI: 10.1073/pnas.2118879119] DOI Google Scholar
2022	Noble, J.A., Bielski, N., Liu, M.-C.J., DeFalco, T.A., Stegmann, M., Nelson, A.D.L., McNamara, K., Sullivan, B., Dinh, K.K., Khuu, N., et al. "Evolutionary analysis of the LORELEI gene family in plants reveals regulatory subfunctionalization." Plant Physiology 190,4, 2539-2556+ (2022). [DOI: 10.1093/plphys/kiac444] DOI Google Scholar
2022	Noble, J.A., Seddon, A., Uygun, S., Bright, A., Smith, S.E., Shiu, S.-H. & Palanivelu, R. "The SEEL motif and members of the MYB-related REVEILLE transcription factor family are important for the expression of LORELEI in the synergid cells of the Arabidopsis female gametophyte." Plant Reproduction 35,1, 61-76+ (2022). [DOI: 10.1007/s00497-021-00432-1] DOI Google Scholar	Sustainability
2022	O'Neill, E.G., Martinez-Feria, R.A., Basso, B. & Maravelias, C.T. "Integrated spatially explicit landscape and cellulosic biofuel supply chain optimization under biomass yield uncertainty." Computers & Chemical Engineering 160, 107724+ (2022). [DOI: 10.1016/j.compchemeng.2022.107724] DOI Google Scholar	Sustainability
2022	Ohnuki, S., Ogawa, I., Itto-Nakama, K., Lu, F., Ranjan, A., Kabbage, M., Gebre, A.A., Yamashita, M., Li, S.C., Yashiroda, Y., et al. "High-throughput platform for yeast morphological profiling predicts the targets of bioactive compounds." npj Systems Biology Applications 8,1, 3+ (2022). [DOI: 10.1038/s41540-022-00212-1] DOI Google Scholar
2022	Padmakshan, D., Timokhin, V.I., Lu, F., Schatz, P.F., Vanholme, R., Boerjan, W. & Ralph, J. "Synthesis of hydroxycinnamoyl shikimates and their role in monolignol biosynthesis." Holzforschung 76,2, 133-144+ (2022). [DOI: 10.1515/hf-2021-0149] DOI Google Scholar
2022	Pan, D., Gelfand, I., Tao, L., Abraha, M., Sun, K., Guo, X., Chen, J., Robertson, P. & Zondlo, M.A. "A new open-path eddy covariance method for nitrous oxide and other trace gases that minimizes temperature corrections." Global Change Biology 28,4, 1446-1457+ (2022). [DOI: 10.1111/gcb.15986] DOI Google Scholar
2022	Perez, J.M., Sener, C., Misra, S., Umana, G.E., Coplien, J., Haak, D., Li, Y., Maravelias, C.T., Karlen, S.D., Ralph, J., et al. "Integrating lignin depolymerization with microbial funneling processes using agronomically relevant feedstocks." Green Chemistry 24,7, 2795-2811+ (2022). [DOI: 10.1039/D1GC03592D] DOI Google Scholar
2022	Ranaweera, T., Brown, B.N.I., Wang, P. & Shiu, S.-H. "Temporal regulation of cold transcriptional response in switchgrass." Frontiers in Plant Science 13, 998400+ (2022). [DOI: 10.3389/fpls.2022.998400] DOI Google Scholar	Sustainability
2022	Rencoret, J., Rosado, M.J., Kim, H., Timokhin, V.I., Gutiérrez, A., Bausch, F., Rosenau, T., Potthast, A., Ralph, J. & del Río, J.C. "Flavonoids naringenin chalcone, naringenin, dihydrotricin, and tricin are lignin monomers in papyrus." Plant Physiology 188,1, 208-219+ (2022). [DOI: 10.1093/plphys/kiab469] DOI Google Scholar
2022	Robertson, P., Hamilton, S.K., Paustian, K. & Smith, P. "Land-based climate solutions for the United States." Global Change Biology 28,16, 4912-4919+ (2022). [DOI: 10.1111/gcb.16267] DOI Google Scholar
2022	Sakai, S. & Rothamer, D. "Relative particle emission tendencies of 2-methyl-3-buten-2-ol–gasoline, isobutanol–gasoline, and ethanol–gasoline blends from premixed combustion in a spark-ignition engine." Fuel 324, 124638+ (2022). [DOI: 10.1016/j.fuel.2022.124638] DOI Google Scholar
2022	Sanford, G., Jackson, R.D., Rui, Y. & Kucharik, C.J. "Land use-land cover gradient demonstrates the importance of perennial grasslands with intact soils for building soil carbon in the fertile Mollisols of the North Central US." Geoderma 418, 115854+ (2022). [DOI: 10.1016/j.geoderma.2022.115854] DOI Google Scholar	Sustainability
2022	Scarborough, M.J., Myers, K.S., Fortney, N.W., Ingle, A.T., Donohue, T.J. & Noguera, D.R. "Metagenome-assembled genomes from a microbiome converting xylose to medium-chain carboxylic acids." Microbiology Resource Announcements 11,4, (2022). [DOI: 10.1128/mra.01151-21] DOI Google Scholar
2022	Sciusco, P., Chen, J., Giannico, V., Abraha, M., Lei, C., Shirkey, G., Yuan, J. & Robertson, P. "Albedo-induced global warming impact at multiple temporal scales within an Upper Midwest USA watershed." Land 11,2, 283+ (2022). [DOI: 10.3390/land11020283] DOI Google Scholar	Sustainability
2022	Shirkey, G., John, R., Chen, J., Dahlin, K., Abraha, M., Sciusco, P., Lei, C. & Reed, D.E. "Fine resolution remote sensing spectra improves estimates of gross primary production of croplands." Agricultural and Forest Meteorology 326, 109175+ (2022). [DOI: 10.1016/j.agrformet.2022.109175] DOI Google Scholar
2022	Shuai, G. & Basso, B. "Subfield maize yield prediction improves when in-season crop water deficit is included in remote sensing imagery-based models." Remote Sensing of Environment 272, 112938+ (2022). [DOI: 10.1016/j.rse.2022.112938] DOI Google Scholar	Sustainability
2022	Smith, R.A., Beebe, E.T., Bingman, C.A., Meulen, K.V., Eugene, A., Steiner, A.J., Karlen, S.D., Ralph, J. & Fox, B.G. "Identification and characterization of a set of monocot BAHD monolignol transferases." Plant Physiology 189,1, 37-48+ (2022). [DOI: 10.1093/plphys/kiac035] DOI Google Scholar
2022	Smith, R.A., Lu, F., Muro-Villanueva, F., Cusumano, J.C., Chapple, C. & Ralph, J. "Manipulation of lignin monomer composition combined with the introduction of monolignol conjugate biosynthesis leads to synergistic changes in lignin structure." Plant and Cell Physiology 63,6, 744-754+ (2022). [DOI: 10.1093/pcp/pcac031] DOI Google Scholar
2022	Spurley, W.J., Fisher, K.J., Langdon, Q.K., Buh, K.V., Jarzyna, M., Haase, M.A.B., Sylvester, K., Moriarty, R.V., Rodriguez, D., Sheddan, A., et al. "Substrate, temperature, and geographical patterns among nearly 2000 natural yeast isolates." Yeast 39,1-2, 55-68+ (2022). [DOI: 10.1002/yea.3679] DOI Google Scholar
2022	Steenwyk, J.L., Phillips, M.A., Yang, F., Date, S.S., Graham, T.R., Berman, J., Hittinger, C.T. & Rokas, A. "An orthologous gene coevolution network provides insight into eukaryotic cellular and genomic structure and function." Science Advances 8,18, (2022). [DOI: 10.1126/sciadv.abn0105] DOI Google Scholar
2022	Sumer, Z. & Van Lehn, R.C. "Data-centric development of lignin structure-solubility relationships in deep eutectic solvents using molecular simulations." ACS Sustainable Chemistry & Engineering 10,31, 10144-10156+ (2022). [DOI: 10.1021/acssuschemeng.2c01375] DOI Google Scholar