Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2022	Kittredge, H.A., Dougherty, K.M. & Evans, S.E. "Dead but not forgotten: how extracellular DNA, moisture, and space modulate the horizontal transfer of extracellular antibiotic resistance genes in soil." Environmental Microbiology 88,7, (2022). [DOI: 10.1128/aem.02280-21] DOI Google Scholar	Sustainability
2022	Ko, D.K. & Brandizzi, F. "Advanced genomics identifies growth effectors for proteotoxic ER stress recovery in Arabidopsis thaliana." Communications Biology 5, 16+ (2022). [DOI: 10.1038/s42003-021-02964-8] DOI Google Scholar
2022	Ko, D.K. & Brandizzi, F. "Transcriptional competition shapes proteotoxic ER stress resolution." Nature Plants 8,5, 481-490+ (2022). [DOI: 10.1038/s41477-022-01150-w] DOI Google Scholar
2022	Krause, D.J. & Hittinger, C.T. "Functional divergence in a multi-gene family is a key evolutionary innovation for anaerobic growth in Saccharomyces cerevisiae." Molecular Biolology and Evolution 39,10, (2022). [DOI: 10.1093/molbev/msac202] DOI Google Scholar
2022	Kravchenko, A.N., Richardson, J.A., Lee, J.H. & Guber, A.K. "Distribution of Mn oxidation states in grassland soils and their relationships with soil pores." Environmental Science & Technology 56,22, 16462-16472+ (2022). [DOI: 10.1021/acs.est.2c05403] DOI Google Scholar
2022	Lakey, B.D., Myers, K.S., Alberge, F., Mettert, E.L., Kiley, P.J., Noguera, D.R. & Donohue, T.J. "The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis." PLOS Genetics 18,6, (2022). [DOI: 10.1371/journal.pgen.1010270] DOI Google Scholar
2022	Lal, P.B., Wells, F. & Kiley, P.J. "Creation of markerless genome modifications in a nonmodel bacterium by fluorescence-aided recombineering." Methods in Molecular Biology 2479, 53-70+ (2022). [DOI: 10.1007/978-1-0716-2233-9_5] DOI Google Scholar
2022	Lamb, A., Weers, B., McKinley, B., Rooney, W., Morgan, C., Marshalll-Colon, A. & Mullet, J. "Bioenergy sorghum’s deep roots: a key to sustainable biomass production on annual cropland." Global Change Biology – Bioenergy 14,2, 132-156+ (2022). [DOI: 10.1111/gcbb.12907] DOI Google Scholar
2022	Lark, T.J., Hendricks, N.P., Smith, A., Pates, N., Spawn-Lee, S.A., Bougie, M., Booth, E.G., Kucharik, C.J. & Gibbs, H.K. "Environmental outcomes of the US Renewable Fuel Standard." Proceedings of the National Academy of Sciences of the United States of America 119,9, (2022). [DOI: 10.1073/pnas.2101084119] DOI Google Scholar	Sustainability
2022	Li, J., Maravelias, C.T. & Van Lehn, R.C. "Adaptive conformer sampling for property prediction using the conductor-like screening model for real solvents." Industrial & Engineering Chemistry Research 61,25, 9025-9036+ (2022). [DOI: 10.1021/acs.iecr.2c01163] DOI Google Scholar
2022	Li, X., Sarma, S.J., Sumner, L.W., Jones, D. & Last, R.L. "Switchgrass metabolomics reveals striking genotypic and developmental differences in specialized metabolic phenotypes." Journal of Agricultural and Food Chemistry 70,26, 8010-8023+ (2022). [DOI: 10.1021/acs.jafc.2c01306] DOI Google Scholar	Sustainability
2022	Li, Y., Liu, H., Steenwyk, J.L., Labella, A.L., Harrison, M.-C., Groenewald, M., Zhou, X., Shen, X.-X., Zhao, T., Hittinger, C.T., et al. "Contrasting modes of macro and microsynteny evolution in a eukaryotic subphylum." Current Biology 32, 5335-5343+ (2022). [DOI: 10.1016/j.cub.2022.10.025] DOI Google Scholar
2022	Linz, A.M., Ma, Y., Scholz, S., Noguera, D.R. & Donohue, T.J. "iNovo479: metabolic modeling provides a roadmap to optimize bioproduct yield from deconstructed lignin aromatics by Novosphingobium aromaticivorans." Metabolites 12,4, 366+ (2022). [DOI: 10.3390/metabo12040366] DOI Google Scholar
2022	Liu, Y., Evans, S.E., Friesen, M.L. & Tiemann, L.K. "Root exudates shift how N mineralization and N fixation contribute to the plant-available N supply in low fertility soils." Soil Biology and Biochemistry 165, 108541+ (2022). [DOI: 10.1016/j.soilbio.2021.108541] DOI Google Scholar	Sustainability
2022	Mahon, E.L., de Vries, L., Jang, S.-K., Middar, S., Kim, H., Unda, F., Ralph, J. & Mansfield, S.D. "Exogenous chalcone synthase expression in developing poplar xylem incorporates naringenin into lignins." Plant Physiology 188, 984-996+ (2022). [DOI: 10.1093/plphys/kiab499] DOI Google Scholar
2022	Malmstrom, C.M., Busch, A.K., Cole, E.A., Trebicki, P., Berndardo, P., Brown, A.K., Landis, D.A. & Werling, B.P. "Emerging wild virus of native grass bioenergy feedstock is well established in the Midwestern USA and associated with premature stand senescence." Global Change Biology – Bioenergy 14,4, 463-480+ (2022). [DOI: 10.1111/gcbb.12927] DOI Google Scholar	Sustainability
2022	Martin, T. & Sprunger, C. D. "Sensitive measures of soil health reveal carbon stability across a management intensity and plant biodiversity gradient." Frontiers in Soil Science 2, 917885+ (2022). [DOI: 10.3389/fsoil.2022.917885] DOI Google Scholar	Sustainability
2022	Martinez-Feria, R., Basso, B. & Kim, S. "Boosting climate change mitigation potential of perennial lignocellulosic crops grown on marginal lands." Environmental Research Letters 17, 044004+ (2022). [DOI: 10.1088/1748-9326/ac541b] DOI Google Scholar	Sustainability
2022	McDaniel, E.A., van Steenbrugge, J.J.M., Noguera, D.R., Raaijmakers, J.M., Medema, M.H. & Oyserman, B.O. "TbasCO: trait-based comparative ‘omics identifies ecosystem-level and niche-differentiating adaptations of an engineered microbiome." ISME Communications 2, 111+ (2022). [DOI: 10.1038/s43705-022-00189-2] DOI Google Scholar
2022	McKenzie, A.M., Henry, C., Myers, K.S., Place, M.M. & Keck, J.L. "Identification of genetic interactions with priB links the PriA/PriB DNA replication restart pathway to double-strand DNA break repair in Escherichia coli." G3: Genes \| Genomes \| Genetics 12,12, (2022). [DOI: 10.1093/g3journal/jkac295] DOI Google Scholar
2022	Menefee, D., Scott, R.L., Abraha, M., Alfieri, J.G., Baker, J., Browning, D.M., Chen, J., Gonet, J., Johnson, J.M.F., Miller, G.R., et al. "Unraveling the effects of management and climate on carbon fluxes of U.S. croplands using the USDA Long-Term Agroecosystem (LTAR) network." Agricultural and Forest Meteorology 326, 109154+ (2022). [DOI: 10.1016/j.agrformet.2022.109154] DOI Google Scholar
2022	Moore, B.M., Lee, Y.S., Wang, P., Azodi, C., Grotewold, E. & Shiu, S.-H. "Modeling temporal and hormonal regulation of plant transcriptional response to wounding." The Plant Cell 34,2, 867-888+ (2022). [DOI: 10.1093/plcell/koab287] DOI Google Scholar
2022	Morais, A.R.C., Zhang, J., Dong, H., Otto, W.G., Mokomele, T., Hodge, D., Balan, V., Dale, B.E., Lukasik, R.M. & Sousa, L. da C. "Development of an ammonia pretreatment that creates synergies between biorefineries and advanced biomass logistics models." Green Chemistry 24,11, 4443-4462+ (2022). [DOI: 10.1039/D2GC00488G] DOI Google Scholar	Deconstruction
2022	Moran, J.J., Linley, T.J., Makarem, C.N., Kelly, J.F., Freeburg, E.D.W., Cleary, D.M., Alexander, L. & Kriesel, J.M. "Spectroscopy-based isotopic (δ13C) analysis for high spatial resolution of carbon exchange in the rhizosphere." Rhizosphere 23, 100564+ (2022). [DOI: 10.1016/j.rhisph.2022.100564] DOI Google Scholar	Sustainability
2022	Mottiar, Y. & Mansfield, S.D. "Lignin p-hydroxybenzoylation Is negatively correlated with syringyl units in poplar." Frontiers in Plant Science 13, 938083+ (2022). [DOI: 10.3389/fpls.2022.938083] DOI Google Scholar