Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2025	Adhikari, B., Verchot, J., Brandizzi, F. & Ko, D.K. "ER stress and viral defense: advances and future perspectives on plant unfolded protein response in pathogenesis." Journal of Biological Chemistry DOI: 10.1016/j.jbc.2025.108354, 108354+ (2025). [DOI: 10.1016/j.jbc.2025.108354] DOI Google Scholar
2025	Alvarenga, F.B.M., Barros, K.O., Batista, T.M., Souza, G.F.L., Santos, A.R.O., Abegg, M.A., Sato, T.K., Hittinger, C.T., Lachance, M.-A. & Rosa, C.A. "Vanderwaltozyma urihicola sp. nov., a yeast species isolated from rotting wood and beetles in a Brazilian Amazonian rainforest biome." International Journal of Systematic and Evolutionary Microbiology 75,3, (2025). [DOI: 10.1099/ijsem.0.006718] DOI Google Scholar
2025	Banta, A.B., Cuellar, R.A., Nadig, N., Davis, B.C. & Peters, J.M. "The promise of CRISPR-associated transposons for bacterial functional genomics." Current Opinion in Microbiology 83, 102563+ (2025). [DOI: 10.1016/j.mib.2024.102563] DOI Google Scholar
2025	Boismier, E.C., Aboulnaga, E.A. & TerAvest, M.A. "Zymomonas mobilis: bringing an ancient human tool into the genomic era." Current Opinion in Biotechnology 92, 103257+ (2025). [DOI: 10.1016/j.copbio.2025.103257] DOI Google Scholar
2025	Bozek, A., Mathis, F., Guillaumat, L., Mussig, J., Boizot, N., Ismael, A., Ralph, J., Lu, F., Sibout, R. & Beaugrand, J. "Determination of a suitable molar absorption coefficient (epsilon) for lignin analysis of fibrous plants using the CASA method." International Journal of Biological Macromolecules 308,Part 1, 142324+ (2025). [DOI: 10.1016/j.ijbiomac.2025.142324] DOI Google Scholar
2025	Chakraborty, P., Guber, A. & Kravchenko, A. "Microbial O2 consumption as a function of pore structure in soils of sorghum, switchgrass, and prairie vegetation systems." Vadose Zone Journal 24,1, (2025). [DOI: 10.1002/vzj2.70001] DOI Google Scholar
2025	Córdova, C., Kravchenko, A.N., Miesel, J.R. & Robertson, P. "Soil carbon change in intensive agriculture after 25 years of conservation management." Geoderma 453, 117133+ (2025). [DOI: 10.1016/j.geoderma.2024.117133] DOI Google Scholar
2025	Falvo, G., Zhang, Y., Abraha, M., Mosier, S., Su, Y.-J., Lei, C., Chen, J., Cotrufo, F. & Robertson, P. "Combining eddy covariance towers, field measurements, and the MEMS 2 ecosystem model improves confidence in the climate impacts of bioenergy with carbon capture and storage." Global Change Biology – Bioenergy 17,3, (2025). [DOI: 10.1111/gcbb.70023] DOI Google Scholar
2025	Geissler, C.H., Haan, N.L., Basso, B., Fowler, A., Landis, D.A., Lark, T.J. & Maravelias, C.T. "A multi-objective optimization model for cropland design considering profit, biodiversity, and ecosystem services." Ecological Modelling 500, 110954+ (2025). [DOI: 10.1016/j.ecolmodel.2024.110954] DOI Google Scholar
2025	Hellinger, J., Ralph, J. & Karlen, S.D. "p‐Coumaroylated lignins are natively produced in three rosales families." ACS Omega 10,6, 6220–6227+ (2025). [DOI: 10.1021/acsomega.4c11429] DOI Google Scholar
2025	Hussain, M.Z., Hamilton, S.K., Basso, B. & Robertson, P. "Phosphorus budgets of intensively managed row crops at a long-term agroecosystem research site in the upper US Midwest." Journal of Environmental Quality DOI: 10.1002/jeq2.70000, (2025). [DOI: 10.1002/jeq2.70000] DOI Google Scholar
2025	Ko, D.K. & Brandizzi, F. "A network-enabled pipeline for gene discovery and validation in non-model plant species." Cell Reports Methods 5,1, 100963+ (2025). [DOI: 10.1016/j.crmeth.2024.100963] DOI Google Scholar
2025	Koleva, D.T., Liu, M., Dusak, B., Ghosh, S., Krogh, C.T., Hellebek, I.R., Cortsen, M.T., Motawie, M.S., Jørgensen, F.S., McKinley, B.A., et al. "Amino acid substrate specificities and tissue expression profiles of the nine CYP79A encoding genes in Sorghum bicolor." Physiologia Plantarum 177,1, (2025). [DOI: 10.1111/ppl.70029] DOI Google Scholar
2025	Liu, S., Chou, M.-Y., Benucci, G.M.N., Eudes, A. & Bonito, G. "Genetic modification of the shikimate pathway to reduce lignin content in switchgrass (Panicum virgatum L.) significantly impacts plant microbiomes." Microbiology Spectrum 13,1, (2025). [DOI: 10.1128/spectrum.01546-24] DOI Google Scholar
2025	Metz, F., Allemann, M.N., Michener, J.K., Myers, K.S., Lu, F., Noguera, D.R. & Donohue, T.J. "RB-TnSeq barcode abundance data sets for Novosphingobium aromaticivorans grown on the β-5-linked aromatic dimer dehydrodiconiferyl alcohol." Microbiology Resource Announcements 14,1, (2025). [DOI: 10.1128/mra.00844-24] DOI Google Scholar
2025	Miao, G., Li, H., Zhu, Y., Chen, S., Lu, F., Ralph, J. & Xu, F. "Deep eutectic solvents for efficient fractionation of lignocellulose to produce uncondensed lignin and high-quality cellulose." ACS Sustainable Chemistry & Engineering 13, 2197-2209+ (2025). [DOI: 10.1021/acssuschemeng.4c09673] DOI Google Scholar
2025	Min, K., Nuccio, E., Slessarev, E., Kan, M., McFarlane, K.J., Oerter, E., Jurusik, A., Sanford, G., Thelen, K.D., Pett-Ridge, J., et al. "Deep-rooted perennials alter microbial respiration and chemical composition of carbon in density fractions along soil depth profiles." Geoderma 455, 117202+ (2025). [DOI: 10.1016/j.geoderma.2025.117202] DOI Google Scholar
2025	Mottiar, Y., Tschaplinski, T.J., Ralph, J. & Mansfield, S.D. "Suppression of chorismate mutase 1 in hybrid poplar to investigate potential redundancy in the supply of lignin precursors." Plant Direct 9,3, (2025). [DOI: 10.1002/pld3.70053] DOI Google Scholar
2025	O’Neill, E.G., Lark, T.J., Xie, Y., Kim, S., Dale, B.E., Robertson, G.P., Basso, B. & Maravelias, C.T. "Available land for cellulosic biofuel production: a supply chain centered comparison." Environmental Research Letters 20,1, 014067+ (2025). [DOI: 10.1088/1748-9326/ada301] DOI Google Scholar
2025	Oliveira, D.M., Saleme, M. de L.S., Smith, R.A., Vangeel, T., Lima, M. de F., Chanoca, A.A., Mota, T.R., Vanhevel, Y., Coussens, G., Van Aelst, K., et al. "CRISPR/Cas9 editing of p-COUMAROYL-CoA:MONOLIGNOL TRANSFERASE 1 in maize alters phenolic metabolism, lignin structure, and lignin-first biomass processing." Trends in Biotechnology DOI: 10.1016/j.tibtech.2025.01.006, (2025). [DOI: 10.1016/j.tibtech.2025.01.006] DOI Google Scholar
2024	Bandopadhyay, S., Li, X., Bowsher, A.W., Last, R.L. & Shade, A. "Disentangling plant- and environment-mediated drivers of active rhizosphere bacterial community dynamics during short-term drought." Nature Communications 15,1, 6347+ (2024). [DOI: 10.1038/s41467-024-50463-1] DOI Google Scholar
2024	Banerjee, R., Askenasy, I., Mettert, E.L. & Kiley, P.J. "Iron-sulfur Rrf2 transcription factors: an emerging versatile platform for sensing stress." Current Opinion in Microbiology 82, 102543+ (2024). [DOI: 10.1016/j.mib.2024.102543] DOI Google Scholar
2024	Barros, K.O., Mader, M., Krause, D.J., Pangilinan, J., Andreopoulos, B., Lipzen, A., Mondo, S.J., Grigoriev, I.V., Rosa, C.A., Sato, T.K., et al. "Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces." Biotechnology for Biofuels and Bioproducts 17,1, 20+ (2024). [DOI: 10.1186/s13068-024-02467-8] DOI Google Scholar
2024	Bhandari, D.D. & Brandizzi, F. "Logistics of defense: the contribution of endomembranes to plant innate immunity." Journal of Cell Biology 223,6, (2024). [DOI: 10.1083/jcb.202307066] DOI Google Scholar
2024	Bibik, J.D., Bryson, A.E. & Hamberger, B. "Compartmentalized terpenoid production in plants using Agrobacterium-mediated transient expression." in Synthetic Biology. Methods in Molecular Biology. vol. 2760 21-34+ (Humana, 2024). [DOI: 10.1007/978-1-0716-3658-9_2] DOI Google Scholar