Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2012	Kaur, H., Shaker, K., Heinzel, N., Ralph, J., Galis, I. & Baldwin, I.T. "Environmental stresses of field growth allow cinnamyl alcohol dehydrogenase-deficient Nicotiana attenuata plants to compensate for their structural deficiencies." Plant Physiology 159, 1545-1570+ (2012). [DOI: 10.1104/pp.112.196717] DOI Google Scholar	Feedstocks
2012	Kim, J. & Reed, J.L. "RELATCH: relative optimality in metabolic networks explains robust metabolic and regulatory responses to perturbations." Genome Biology 13,9, (2012). [DOI: 10.1186/gb-2012-13-9-r78] DOI Google Scholar	Conversion
2012	Kim, S., Dale, B.E. & Ong, R.G. "An alternative approach to indirect land use change: allocating greenhouse gas effects among different uses of land." Biomass and Bioenergy 46, 447-452+ (2012). [DOI: 10.1016/j.biombioe.2012.07.015] DOI Google Scholar	Sustainability
2012	Kim, S.-J. & Brandizzi, F. "News and views into the SNARE complexity in Arabidopsis." Frontiers in Plant Science 3, 28+ (2012). [DOI: 10.3389/fpls.2012.00028] DOI Google Scholar	Feedstocks
2012	Kim, W.-C., Ko, J.-H. & Han, K.-H. "Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis." Plant Molecular Biology 78,4-5, 489-501+ (2012). [DOI: 10.1007/s11103-012-9880-7] DOI Google Scholar	Feedstocks
2012	Ko, J.-H., Kim, H.-T., Hwang, I. & Han, K.-H. "Tissue-type-specific transcriptome analysis identifies developing xylem-specific promoters in poplar." Plant Biotechnology Journal 10,5, 587-596+ (2012). [DOI: 10.1111/j.1467-7652.2012.00690.x] DOI Google Scholar	Feedstocks
2012	Ko, J.-H., Kim, W.-C., Kim, J.-Y., Ahn, S.-J. & Han, K.-H. "MYB46-mediated transcriptional regulation of secondary wall biosynthesis." Molecular Plant 5,5, 961-963+ (2012). [DOI: 10.1093/mp/sss076] DOI Google Scholar	Feedstocks
2012	Kontur, W.S., Noguera, D.D. & Donohue, T.J. "Maximizing reductant flow into microbial H2 production." Current Opinion in Biotechnology 23,3, 382-389+ (2012). [DOI: 10.1016/j.copbio.2011.10.003,] DOI Google Scholar	Conversion
2012	Landis, D.A., Gardiner, M.M. & Tompkins, J. "Using native plant species to diversify agriculture." in Biodiversity and Insect Pests: Key Issues for Sustainable Management. 276-292+ (John Wiley & Sons, Ltd, 2012). [DOI: 10.1002/9781118231838.ch17] DOI Google Scholar	Sustainability
2012	Lau, M.W., Bals, B.D., Chundawat, S.P.S., Jin, M., Gunawan, C., Balan, V., Jones, D. & Dale, B.E. "An integrated paradigm for cellulosic biorefineries: utilization of lignocellulosic biomass as self-sufficient feedstocks for fuel, food precursors and saccharolytic enzyme production." Energy & Environmental Science 5,5, 7100-7110+ (2012). [DOI: 10.1039/C2EE03596K] DOI Google Scholar	Deconstruction
2012	Lennen, R.M. & Pfleger, B.F. "Engineering Escherichia coli to synthesize free fatty acids." Trends in Biotechnology 30,12, 659-67+ (2012). [DOI: 10.1016/j.tibtech.2012.09.006] DOI Google Scholar	Conversion
2012	Li, M., Foster, C.E., Pu, Y., Holmes, D., Saffron, C., Ragauskas, A. & Hodge, D.B. "Structural characterization of alkaline hydrogen peroxide pretreated grasses exhibiting diverse lignin phenotypes." Biotechnology for Biofuels 5, 38+ (2012). [DOI: 10.1186/1754-6834-5-38] DOI Google Scholar	Deconstruction
2012	Liang, C., Duncan, D.S., Balser, T.C., Tiedje, J.M. & Jackson, R.D. "Soil microbial residue storage linked to soil legacy under biofuel cropping systems in southern Wisconsin, USA." Soil Biology and Biochemistry 57, 939-942+ (2012). [DOI: 10.1016/j.soilbio.2012.09.006] DOI Google Scholar	Sustainability
2012	Liang, C., Jesus, E. da C., Duncan, D.S., Jackson, R.D., Tiedje, J.M. & Balser, T.C. "Soil microbial communities under model biofuel cropping systems in southern Wisconsin, USA: impact of crop species and soil properties." Applied Soil Ecology 54, 24-31+ (2012). [DOI: 10.1016/j.apsoil.2011.11.015] DOI Google Scholar	Sustainability
2012	Liang, C., Read, H.W. & Balser, T.C. "GC-based detection of aldononitrile acetate derivatized glucosamine and muramic acid for microbial residue determination in soil." Journal of Visualized Experiments (2012). [DOI: 10.3791/3767] DOI Google Scholar	Sustainability
2012	Liepman, A.H. & Cavalier, D.M. "The CELLULOSE SYNTHASE-LIKE A and CELLULOSE SYNTHASE-LIKE C families: recent advances and future perspectives." Frontiers in Plant Science 3, 109+ (2012). [DOI: 10.3389/fpls.2012.00109] DOI Google Scholar	Feedstocks
2012	Long, T.M., Su, Y.-K.K., Headman, J., Higbee, A., Willis, L.B. & Jeffries, T.W. "Cofermentation of glucose, xylose, and cellobiose by the beetle-associated yeast, Spathaspora passalidarum." Applied and Environmental Microbiology 78,16, 5492-54500+ (2012). [DOI: 10.1128/AEM.00374-12] DOI Google Scholar	Conversion
2012	Lu, F., Wei, L., Azarpira, A. & Ralph, J. "Rapid syntheses of dehydrodiferulates via biomimetic radical coupling reactions of ethyl ferulate." Journal of Agricultural and Food Chemistry 60, 8272-8277+ (2012). [DOI: 10.1021/jf302140k] DOI Google Scholar	Feedstocks, Deconstruction
2012	Mansfield, S.D., Kim, H., Lu, F. & Ralph, J. "Whole plant cell wall characterization using solution-state 2D NMR." Nature Protocols 7, 1579-1589+ (2012). [DOI: 10.1038/nprot.2012.064] DOI Google Scholar	Feedstocks
2012	Masukawa, H., Kitashima, M., Inoue, K., Sakurai, H. & Hausinger, R.P. "Genetic engineering of cyanobacteria to enhance biohydrogen production from sunlight and water." Ambio 41,(Supplement 2), 169-173+ (2012). [DOI: 10.1007/s13280-012-0275-4] DOI Google Scholar	Conversion
2012	Masukawa, H., Mochimaru, M. & Takaichi, S. "Characterization of carotenogenesis genes in the cyanobacterium Anabaena sp. PCC 7120." in Methods in Molecular Biology. vol. 892 297-306+ (Humana Press, 2012). [DOI: 10.1007/978-1-61779-879-5_18] DOI Google Scholar	Conversion
2012	McLaughlin, L.S., Haft, R.J. & Forest, K.T. "Structural insights into the Type II secretion nanomachine." Current Opinion in Structural Biology 22,2, 208-16+ (2012). [DOI: 10.1016/j.sbi.2012.02.005] DOI Google Scholar	Conversion
2012	Mead, D., Lucas, S., Copeland, A., Lapidus, A., Cheng, J.-F., Bruce, D.C., Goodwin, L.A., Pitluck, S., Chertkov, O., Zhang, X., et al. "Complete genome sequence of Paenibacillus strain Y4.12MC10, a novel Paenibacillus lautus strained isolated from Obsidian Hot Spring in Yellowstone National Park." Standards in Genomic Science 6, 366-385+ (2012). [DOI: 10.4056/sigs.2605792] DOI Google Scholar	Deconstruction
2012	Meehan, T.D., Werling, B.P., Landis, D.A. & Gratton, C. "Pest-suppression potential of Midwestern landscapes under contrasting bioenergy scenarios." PLOS ONE 7,7, (2012). [DOI: 10.1371/journal.pone.0041728.g001] DOI Google Scholar	Sustainability
2012	Miao, R., Hennessy, D.A. & Babcock, B.A. "Investment in cellulosic biofuel refineries: Do waivable biofuel mandates matter?" American Journal of Agricultural Economics 9,3, 750-762+ (2012). [DOI: 10.1093/ajae/aar142] DOI Google Scholar	Sustainability