Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2021	McDaniel, E.A., Moya-Flores, F., Beach, N.K., Camejo, P.Y., Oyserman, B.O., Kizaric, M., Khor, E.H., Noguera, D.R. & McMahon, K.D. "Metabolic differentiation of co-occurring Accumulibacter clades revealed through genome-resolved metatranscriptomics." mSystems 6,4, (2021). [DOI: 10.1128/mSystems.00474-21] DOI Google Scholar
2021	McDaniel, E.A., Wever, R., Oyserman, B.O., Noguera, D.R. & McMahon, K.D. "Genome-resolved metagenomics of a photosynthetic bioreactor performing biological nutrient removal." Microbiology Resource Announcements 10,18, (2021). [DOI: 10.1128/MRA.00244-21] DOI Google Scholar
2021	Mosier, S., Córdova, C.S. & Robertson, P. "Restoring soil fertility on degraded lands to meet food, fuel, and climate security needs via perennialization." Frontiers in Sustainable Food Systems 5, 706142+ (2021). [DOI: 10.3389/fsufs.2021.706142] DOI Google Scholar
2021	Murphy, E.K., Mottiar, Y., Soolanayakanahally, R.Y. & Mansfield, S.D. "Variations in cell wall traits impact saccharification potential of Salix famelica and Salix eriocephala." Biomass & Bioenergy 148, 106051+ (2021). [DOI: 10.1016/j.biombioe.2021.106051] DOI Google Scholar	Feedstocks
2021	Myers, K.S., Noguera, D.R. & Donohue, T.J. "Promoter architecture differences among Alphaproteobacteria and other bacterial taxa." mSystems 6,4, (2021). [DOI: 10.1128/mSystems.00526-21] DOI Google Scholar
2021	Myers, K.S., Place, M., Kominek, J., Noguera, D.R. & Donohue, T.J. "Delila-PY, a pipeline for utilizing the Delila suite of software to identify potential DNA binding motifs." Microbiology Resource Announcements 10,15, (2021). [DOI: 10.1128/MRA.00160-21] DOI Google Scholar
2021	Nayfach, S., Roux, S., Seshadri, R., Udwary, D., Varghese, N., Schulz, F., Wu, D., Paez-Espino, D., Chen, I.-M., Huntemann, M., et al. "A genomic catalog of Earth's microbiomes." Nature Biotechnology 39,4, 499-509+ (2021). [DOI: 10.1038/s41587-020-0718-6] DOI Google Scholar
2021	Noble, J.A., Seddon, A., Uygun, S., Bright, A., Smith, S.E., Shiu, S.-H. & Palanivelu, R. "The SEEL motif and members of the MYB-related REVEILLE transcription factor family are important for the expression of LORELEI in the synergid cells of the Arabidopsis female gametophyte." Plant Reproduction 35,1, 61-76+ (2021). [DOI: 10.1007/s00497-021-00432-1] DOI Google Scholar	Sustainability
2021	Ntana, F., Bhat, W.W., Johnson, S.R., Jorgensen, H.J.L., Collinge, D.B., Jensen, B. & Hamberger, B. "A sesquiterpene synthase from the endophytic fungus Serendipita indica catalyzes formation of viridiflorol." Biomolecules 11,6, 898+ (2021). [DOI: 10.3390/biom11060898] DOI Google Scholar
2021	O'Brien, C.E., Oliveira-Pacheco, J., Cinneide, E.O., Haase, M.A.B., Hittinger, C.T., Rogers, T.R., Zaragoza, O., Bond, U. & Butler, G. "Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples." PLOS Pathogens 17,3, (2021). [DOI: 10.1371/journal.ppat.1009138] DOI Google Scholar
2021	O’Neill, E.G. & Maravelias, C.T. "Towards integrated landscape design and biofuel supply chain optimization." Current Opinion in Chemical Engineering 31, 100666+ (2021). [DOI: 10.1016/j.coche.2020.100666] DOI Google Scholar	Sustainability
2021	Oates, N.C., Abood, A., Schirmacher, A.M., Alessi, A.M., Bird, S.M., Bennett, J.P., Leadbeater, D.R., Li, Y., Dowle, A.A., Liu, S., et al. "A multi-omics approach to lignocellulolytic enzyme discovery reveals a new ligninase activity from Parascedosporium putredinis NO1." Proceedings of the National Academy of Sciences of the United States of America 118,18, (2021). [DOI: 10.1073/pnas.2008888118] DOI Google Scholar
2021	Oliver, J., Fan, M., McKinley, B., Zemelis-Durfee, S., Brandizzi, F., Wilkerson, C. & Mullet, J.E. "The AGCVIII kinase Dw2 modulates cell proliferation, endomembrane trafficking, and MLG/xylan cell wall localization in elongating stem internodes of Sorghum bicolor." The Plant Journal 105,4, 1053-1071+ (2021). [DOI: 10.1111/tpj.15086] DOI Google Scholar
2021	Ostrom, P.H., DeCamp, S., Gandhi, H., Haslun, J. & Ostrom, N.E. "The influence of tillage and fertilizer on the flux and source of nitrous oxide with reference to atmospheric variation using laser spectroscopy." Biogeochemistry 152, 143-159+ (2021). [DOI: 10.1007/s10533-020-00742-y] DOI Google Scholar
2021	Perez, J.M., Kontur, W.S., Gehl, C., Gille, D.M., Ma, Y., Niles, A.V., Umana, G., Donohue, T.J. & Noguera, D.R. "Redundancy in aromatic O-demethylation and ring opening reactions in Novosphingobium aromaticivorans and their impact in the metabolism of plant derived phenolics." Applied and Environmental Microbiology 87,8, (2021). [DOI: 10.1128/AEM.02794-20] DOI Google Scholar
2021	Reed, D.E., Poe, J., Abraha, M., Dahlin, K.M. & Chen, J. "Modeled surface-atmosphere fluxes from paired sites in the Upper Great Lakes Region using neural networks." JGR Biogeosciences 126,8, (2021). [DOI: 10.1029/2021JG006363] DOI Google Scholar	Sustainability
2021	Robinson, D.E., Place, M., Hose, J., Jochem, A. & Gasch, A.P. "Natural variation in the consequences of gene overexpression and its implications for evolutionary trajectories." eLife 10, (2021). [DOI: 10.7554/eLife.70564] DOI Google Scholar
2021	Roley, S.S., Ulbrich, T.C. & Robertson, P. "Nitrogen fixation and resorption efficiency differences among twelve upland and lowland switchgrass cultivars." Phytobiomes Journal 5,1, 97-107+ (2021). [DOI: 10.1094/PBIOMES-11-19-0064-FI] DOI Google Scholar
2021	Roney, H.E. & Walker, B.J. "Photon to plate: a holistic view of photosynthetic and anthropogenic energy fluxes." Food and Energy Security DOI: 10.1002/fes3.348, (2021). [DOI: 10.1002/fes3.348] DOI Google Scholar
2021	Ryu, J. & Maravelias, C.T. "A generalized distillation network synthesis model." Chemical Engineering Science 244, 116766+ (2021). [DOI: 10.1016/j.ces.2021.116766] DOI Google Scholar	Deconstruction, Sustainability
2021	Saha, D., Basso, B. & Robertson, P. "Machine learning improves predictions of agricultural nitrous oxide (N2O) emissions from intensively managed cropping systems." Environmental Research Letters 16,2, 024004+ (2021). [DOI: 10.1088/1748-9326/abd2f3] DOI Google Scholar	Sustainability
2021	Saha, P., Lin, F., Thibivilliers, S., Xiong, Y., Pan, C. & Bartley, L.E. "Phenylpropanoid biosynthesis gene expression precedes lignin accumulation during shoot cevelopment in lowland and upland switchgrass genotypes." Frontiers in Plant Science 12, 640930+ (2021). [DOI: 10.3389/fpls.2021.640930] DOI Google Scholar
2021	Schulte, L.A., Dale, B.E., Bozzetto, S., Liebman, M., Souza, G.M., Haddad, N., Richard, T.L., Brown, R.C., Hilbert, J.A. & Arbuckle, G. "Meeting global challenges with regenerative agriculture producing food and energy." Nature Sustainability 5, 384-388+ (2021). [DOI: 10.1038/s41893-021-00827-y] DOI Google Scholar	Sustainability
2021	Shirkey, G., Belongeay, M., Wu, S., Ma, X., Tavakol-Davani, H., Anctil, A., Marquart-Pyatt, S., Stewart, R.A., Sinha, P., Corkish, R., et al. "An environmental and societal analysis of the US electrical energy industry based on the water–energy nexus." Energies 14,9, 2633+ (2021). [DOI: 10.3390/en14092633] DOI Google Scholar	Sustainability
2021	Smercina, D.N., Bowsher, A.W., Evans, S.E., Friesen, M.L., Eder, E.K., Hoyt, D.W. & Tiemann, L.K. "Switchgrass rhizosphere metabolite chemistry driven by nitrogen availability." Phytobiomes Journal 5,1, 88-96+ (2021). [DOI: 10.1094/PBIOMES-09-19-0055-FI] DOI Google Scholar	Sustainability

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