Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2021
Tilhou, N.W. & Casler, M.D. "Subsampling and DNA pooling can increase gains through genomic selection in switchgrass." The Plant Genome 14,3, (2021). [DOI: 10.1002/tpg2.20149]
2021
Ulbrich, T.C., Friesen, M., Roley, S.S., Tiemann, L.K. & Evans, S.E. "Intraspecific variability in root traits and edaphic conditions influence soil microbiomes across 12 switchgrass cultivars." Phytobiomes Journal 5,1, 108-120+ (2021). [DOI: 10.1094/pbiomes-12-19-0069-fi]
Sustainability
2021
Wang, P., Meng, F., Moore, B.M. & Shiu, S.-H. "Impact of short-read sequencing on the misassembly of a plant genome." BMC Genomics 22,1, 99+ (2021). [DOI: 10.1186/s12864-021-07397-5]
Sustainability
2021
Wang, P., Moore, B.M., Uygun, S., Lehti-Shiu, M.D., Barry, C.S. & Shiu, S.-H. "Optimising the use of gene expression data to predict plant metabolic pathway memberships." New Phytologist 231, 475-489+ (2021). [DOI: 10.1111/nph.17355]
2021
Xie, Y., Gibbs, H.K. & Lark, T.J. "Landsat-based Irrigation Dataset (LANID): 30 m resolution maps of irrigation distribution, frequency, and change for the US, 1997–2017." Earth System Science Data 13,12, 5689-5710+ (2021). [DOI: 10.5194/essd-13-5689-2021]
Sustainability
2021
Xie, Y. & Lark, T.J. "Mapping annual irrigation from Landsat imagery and environmental variables across the conterminous United States." Remote Sensing of Environment 260, 112445+ (2021). [DOI: 10.1016/j.rse.2021.112445]
Sustainability
2021
Yu, K.M.J., McKinley, B., Rooney, W.L. & Mullet, J.E. "High planting density induces the expression of GA3-oxidase in leaves and GA mediated stem elongation in bioenergy sorghum." Scientific Reports 11,1, 46+ (2021). [DOI: 10.1038/s41598-020-79975-8]
2021
Yue, F., Lan, W., Zhang, L., Lu, F., Sun, R. & Ralph, J. "Efficient synthesis of pinoresinol, an important lignin dimeric model compound." Frontiers in Energy Research 9, 640337+ (2021). [DOI: 10.3389/fenrg.2021.640337]
2021
Yurkov, A., Alves, A., Bai, F.-Y., Boundy-Mills, K., Buzzini, P., Cadez, N., Cardinali, G., Casaregola, S., Chaturvedi, V., Collin, V., et al. "Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes." IMA Fungus 12,1, 18+ (2021). [DOI: 10.1186/s43008-021-00067-x]
2021
Zhalnina, K., Hawkes, C., Shade, A., Firestone, M.K. & Pett-Ridge, J. "Managing plant microbiomes for sustainable biofuel production." Phytobiomes Journal 5,1, 3-13+ (2021). [DOI: 10.1094/PBIOMES-12-20-0090-E]
2021
Zhang, B., Penton, R., Yu, Z., Xue, C., Chen, Q., Chen, Z., Yan, C., Zhang, Q., Zhao, M., Quensen, J.F., et al. "A new primer set for Clade I nosZ that recovers genes from a broader range of taxa." Biology and Fertility of Soils 57,4, 523-531+ (2021). [DOI: 10.1007/s00374-021-01544-6]
Sustainability
2021
Zhang, J., Shen, W., Collings, C., Meulen, K.A.V., Fox, B.G., Ramos, L.M.V., Dumesic, J.A. & Ding, S.-Y. "Visualizing plant cell wall changes proves the superiority of hydrochloric acid over sulfuric acid catalyzed γ-valerolactone pretreatment." Chemical Engineering Journal 412, 128660+ (2021). [DOI: 10.1016/j.cej.2021.128660]
2021
Zhang, L., MacQueen, A., Bonnette, J., Fritschi, F.B., Lowry, D.B. & Juenger, T.E. "QTL x environment interactions underlie ionome divergence in switchgrass." G3: Genes | Genomes | Genetics 11,7, (2021). [DOI: 10.1093/g3journal/jkab144]
Sustainability
2021
Zhang, X., Lark, T.J., Clark, C.M., Yuan, Y. & LeDuc, S.D. "Grassland-to-cropland conversion increased soil, nutrient, and carbon losses in the US Midwest between 2008 and 2016." Environmental Research Letters 16,5, 054018+ (2021). [DOI: 10.1088/1748-9326/abecbe]
Sustainability
2021
Zhou, P., Sanchez-Rivera, K.L., Huber, G.W. & Van Lehn, R.C. "Computational approach for rapidly predicting temperature-dependent polymer solubilities using molecular-scale models." ChemSusChem 14,19, 4307-4316+ (2021). [DOI: 10.1002/cssc.202101137]
2020
Abbas, M., Peszlen, I., Shi, R., Kim, H., Katahira, R., Kafle, K., Xiang, Z., Huang, X., Min, D., Mohamadamin, M., et al. "Involvement of CesA4, CesA7-A/B and CesA8-A/B in secondary wall formation in Populus trichocarpa wood." Tree Physiology 40,1, 73-89+ (2020). [DOI: 10.1093/treephys/tpz020]
2020
Abraha, M., Chen, J., Hamilton, S.K. & Robertson, P. "Long-term evapotranspiration rates for rainfed corn and perennial bioenergy crops in a mesic landscape." Hydrological Processes 34,3, 810-822+ (2020). [DOI: 10.1002/hyp.13630]
Sustainability
2020
Albrecht, M., Kleijn, D., Williams, N.M., Tschumi, M., Blaauw, B.R., Bommarco, R., Campbell, A.J., Dainese, M., Drummond, F.A., Entling, M.H., et al. "The effectiveness of flower strips and hedgerows on pest control, pollination services and crop yield: a quantitative synthesis." Ecology Letters 23,10, 1488-1498+ (2020). [DOI: 10.1111/ele.13576]
Sustainability
2020
Azodi, C.B., Lloyd, J.P. & Shiu, S.-H. "The cis-regulatory codes of response to combined heat and drought stress in Arabidopsis thaliana." NAR Genomics and Bioinformatics 2,3, (2020). [DOI: 10.1093/nargab/lqaa049]
2020
Azodi, C.B., Pardo, J., VanBuren, R., Campos, G. de L. & Shiu, S.-H. "Transcriptome-based prediction of complex traits in maize." The Plant Cell 32, 139-151+ (2020). [DOI: 10.1105/tpc.19.00332]
2020
Azodi, C.B., Tang, J. & Shiu, S.-H. "Opening the black box: interpretable machine learning for geneticists." Trends in Genetics 36,6, 442-455+ (2020). [DOI: 10.1016/j.tig.2020.03.005]
2020
Banerjee, R., Weisenhorn, E., Schwartz, K.J., Myers, K.S., Glasner, J.D., Perna, N.T., Coon, J.J., Welch, R.A. & Kiley, P.J. "Tailoring a global iron regulon to a uropathogen." mBio 11,2, (2020). [DOI: 10.1128/mBio.00351-20]
2020
Banta, A.B., Enright, A.L., Siletti, C. & Peters, J.M. "A high-efficacy CRISPR interference system for gene function discovery in Zymomonas mobilis." Applied and Environmental Microbiology 86,23, (2020). [DOI: 10.1128/AEM.01621-20]
2020
Banta, A.B., Ward, R.D., Tran, J.S., Bacon, E.E. & Peters, J.M. "Programmable gene knockdown in diverse bacteria using mobile-CRISPRi." Current Protocols in Microbiology 59,1, (2020). [DOI: 10.1002/cpmc.130]
2020
Bao, Y., Song, W.-M., Wang, P., Yu, X., Li, B., Jiang, C., Shiu, S.-H., Zhang, H. & Bassham, D.C. "COST1 regulates autophagy to control plant drought tolerance." Proceedings of the National Academy of Sciences of the United States of America 117,13, 7482-7493+ (2020). [DOI: 10.1073/pnas.1918539117]
Sustainability