Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2021	Kim, S.-J. & Brandizzi, F. "Advances in cell wall matrix research with a focus on mixed-linkage glucan." Plant and Cell Physiology 62,12, 1839-1846+ (2021). [DOI: 10.1093/pcp/pcab106] DOI Google Scholar
2021	Ko, D.K. & Brandizzi, F. "A temporal hierarchy underpins the transcription factor-DNA interactome of the maize UPR." The Plant Journal 105,1, 254-270+ (2021). [DOI: 10.1111/tpj.15044] DOI Google Scholar
2021	Kravchenko, A., Guber, A., Gunina, A., Dippold, M. & Kuzyakov, Y. "Pore-scale view of microbial turnover: combining 14C imaging, µCT, and zymography after adding soluble carbon to soil pores of specific sizes." European Journal of Soil Science 72,2, 593-607+ (2021). [DOI: 10.1111/ejss.13001] DOI Google Scholar	Sustainability
2021	Kravchenko, A.N., Zheng, H., Kuzyakov, Y., Robertson, G.P. & Guber, A.K. "Belowground interplant carbon transfer promotes soil carbon gains in diverse plant communities." Soil Biology and Biochemistry 159, 108297+ (2021). [DOI: 10.1016/j.soilbio.2021.108297] DOI Google Scholar
2021	Kuhl, A.S., Kendall, A.D., van Dam, R.L., Hamilton, S.K. & Hyndman, D.W. "Root water uptake of biofuel crops revealed by coupled electrical resistivity and soil water content measurements." Valdose Zone Journal 20,4, (2021). [DOI: 10.1002/vzj2.20124] DOI Google Scholar	Sustainability
2021	LaBella, A.L., Opulente, D.A., Steenwyk, J.L., Hittinger, C.T. & Rokas, A. "Signatures of optimal codon usage in metabolic genes inform budding yeast ecology." PLOS Biology 19,4, (2021). [DOI: 10.1371/journal.pbio.3001185] DOI Google Scholar
2021	Lal, P.B., Wells, F., Myers, K.S., Banerjee, R., Guss, A.M. & Kiley, P.J. "Improving mobilization of foreign DNA into Zymomonas mobilis ZM4 by removal of multiple restriction systems." Applied and Environmental Microbiology 87,19, (2021). [DOI: 10.1128/AEM.00808-21] DOI Google Scholar	Conversion
2021	Lark, T.J., Schelly, I.H. & Gibbs, H.K. "Accuracy, bias, and improvements in mapping crops and cropland across the United States using the USDA cropland data layer." Remote Sensing 13,5, 968+ (2021). [DOI: 10.3390/rs13050968] DOI Google Scholar	Sustainability
2021	Lawson, C.E., Mundinger, A.B., Koch, H., Jacobson, T.B., Weathersby, C.A., Jetten, M.S.M., Pabst, M., Amador-Noguez, D., Noguera, D.R., McMahon, K., et al. "Investigating the chemolithoautotrophic and formate metabolism of Nitrospira moscoviensis by constraint-based metabolic modeling and 13C-tracer analysis." mSystems 6,4, (2021). [DOI: 10.1128/mSystems.00173-21] DOI Google Scholar
2021	Lee, S.-B., Tremaine, M., Place, M., Liu, L., Pier, A., Krause, D.J., Xie, D., Zhang, Y., Landick, R., Gasch, A.P., et al. "Crabtree/Warburg-like aerobic xylose fermentation by engineered Saccharomyces cerevisiae." Metabolic Engineering 68, 119-130+ (2021). [DOI: 10.1016/j.ymben.2021.09.008] DOI Google Scholar
2021	Lei, C., Abraha, M., Chen, J. & Su, Y.-J. "Long-term variability of root production in bioenergy crops from ingrowth core measurements." Journal of Plant Ecology 14,5, 757-770+ (2021). [DOI: 10.1093/jpe/rtab018] DOI Google Scholar	Sustainability
2021	Leichty, S.I., Kasanke, C.P., Bell, S.L. & Hofmockel, K.S. "Site and bioenergy cropping system similarly affect distinct live and total soil microbial communities." Frontiers in Microbiology 12, 725756+ (2021). [DOI: 10.3389/fmicb.2021.725756] DOI Google Scholar
2021	Li, B.-B., Roley, S.S., Duncan, D.S., Guo, J., Quensen, J.F., Yu, H.-Q. & Tiedje, J.M. "Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses." Soil Biology and Biochemistry 160, 108349+ (2021). [DOI: 10.1016/j.soilbio.2021.108349] DOI Google Scholar	Sustainability
2021	Li, H., Young, S.E., Poulsen, M. & Currie, C.R. "Symbiont-mediated digestion of plant biomass in fungus-farming insects." Annual Review of Entomology 66, 297-316+ (2021). [DOI: 10.1146/annurev-ento-040920-061140] DOI Google Scholar
2021	Li, Y., Steenwyk, J.L., Chang, Y., Wang, Y., James, T.Y., Stajich, J.E., Spatafora, J.W., Groenewald, M., Dunn, C.W., Hittinger, C.T., et al. "A genome-scale phylogeny of the kingdom Fungi." Current Biology 31,8, 1653-1665+ (2021). [DOI: 10.1016/j.cub.2021.01.074] DOI Google Scholar
2021	Liang, D. & Robertson, P. "Nitrification is a minor source of nitrous oxide (N2O) in agricultural landscapes and declines with increasing management intensity." Global Change Biology 27,21, 5599-5613+ (2021). [DOI: 10.1111/gcb.15833] DOI Google Scholar	Sustainability
2021	Liber, J.A., Bonito, G. & Benucci, G.M.N. "CONSTAX2: improved taxonomic classification of environmental DNA markers." Bioinformatics 37,21, 3941-3943+ (2021). [DOI: 10.1093/bioinformatics/btab347] DOI Google Scholar Data	Sustainability
2021	Linz, A.M., Ma, Y., Perez, J.M., Myers, K.S., Kontur, W.S., Noguera, D.R. & Donohue, T.J. "Aromatic dimer dehydrogenases from Novosphingobium aromaticivorans reduce monoaromatic diketones." Applied and Environmental Microbiology 87,24, (2021). [DOI: 10.1128/AEM.01742-21] DOI Google Scholar
2021	Liu, X., Van Acker, R., Voorend, W., Pallidis, A., Goeminne, G., Pollier, J., Morreel, K., Kim, H., Muylle, H., Bosio, M., et al. "Rewired phenolic metabolism and improved saccharification efficiency of a Zea mays cinnamyl alcohol dehydrogenase 2 (zmcad2) mutant." The Plant Journal 105,5, 1240-1257+ (2021). [DOI: 10.1111/tpj.15108] DOI Google Scholar
2021	Lovell, J.T., MacQueen, A.H., Mamidi, S., Bonnette, J., Jenkins, J., Napier, J.D., Sreedasyam, A., Healey, A., Session, A., Shu, S., et al. "Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass." Nature 590, 438–444+ (2021). [DOI: 10.1038/s41586-020-03127-1] DOI Google Scholar	Feedstocks, Sustainability
2021	Lu, F., Wang, C., Chen, M. & Ralph, J. "A facile spectroscopic method for measuring lignin content in lignocellulosic biomass." Green Chemistry 23,14, 5106-5112+ (2021). [DOI: 10.1039/D1GC01507A] DOI Google Scholar
2021	Luo, H., Weeda, E.P., Alherech, M., Anson, C.W., Karlen, S.D., Cui, Y., Foster, C.E. & Stahl, S.S. "Oxidative catalytic fractionation of lignocellulosic biomass under non-alkaline conditions." Journal of the American Chemical Society 143,37, 15462-15470+ (2021). [DOI: 10.1021/jacs.1c08635] DOI Google Scholar	Deconstruction
2021	Ma, Y., Donohue, T.J. & Noguera, D.R. "Kinetic modeling of anaerobic degradation of plant-derived aromatic mixtures by Rhodopseudomonas palustris." Biodegradation 32,2, 179–192+ (2021). [DOI: 10.1007/s10532-021-09932-3] DOI Google Scholar
2021	Maestrini, B. & Basso, B. "Subfield crop yields and temporal stability in thousands of US Midwest fields." Precision Agriculture 22,6, 1749–1767+ (2021). [DOI: 10.1007/s11119-021-09810-1] DOI Google Scholar	Sustainability
2021	Martien, J.I., Trujillo, E.A., Jacobson, T.B., Tatli, M., Hebert, A.S., Stevenson, D.M., Coon, J.J. & Amador-Noguez, D. "Metabolic remodeling during nitrogen fixation in Zymomonas mobilis." mSystems 6,6, (2021). [DOI: 10.1128/mSystems.00987-21] DOI Google Scholar

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