Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2021	Tilhou, N.W. & Casler, M.D. "Subsampling and DNA pooling can increase gains through genomic selection in switchgrass." The Plant Genome 14,3, (2021). [DOI: 10.1002/tpg2.20149] DOI Google Scholar
2021	Ulbrich, T.C., Friesen, M., Roley, S.S., Tiemann, L.K. & Evans, S.E. "Intraspecific variability in root traits and edaphic conditions influence soil microbiomes across 12 switchgrass cultivars." Phytobiomes Journal 5,1, 108-120+ (2021). [DOI: 10.1094/pbiomes-12-19-0069-fi] DOI Google Scholar	Sustainability
2021	Wang, P., Meng, F., Moore, B.M. & Shiu, S.-H. "Impact of short-read sequencing on the misassembly of a plant genome." BMC Genomics 22,1, 99+ (2021). [DOI: 10.1186/s12864-021-07397-5] DOI Google Scholar	Sustainability
2021	Wang, P., Moore, B.M., Uygun, S., Lehti-Shiu, M.D., Barry, C.S. & Shiu, S.-H. "Optimising the use of gene expression data to predict plant metabolic pathway memberships." New Phytologist 231, 475-489+ (2021). [DOI: 10.1111/nph.17355] DOI Google Scholar
2021	Xie, Y., Gibbs, H.K. & Lark, T.J. "Landsat-based Irrigation Dataset (LANID): 30 m resolution maps of irrigation distribution, frequency, and change for the US, 1997–2017." Earth System Science Data 13,12, 5689-5710+ (2021). [DOI: 10.5194/essd-13-5689-2021] DOI Google Scholar	Sustainability
2021	Xie, Y. & Lark, T.J. "Mapping annual irrigation from Landsat imagery and environmental variables across the conterminous United States." Remote Sensing of Environment 260, 112445+ (2021). [DOI: 10.1016/j.rse.2021.112445] DOI Google Scholar	Sustainability
2021	Yu, K.M.J., McKinley, B., Rooney, W.L. & Mullet, J.E. "High planting density induces the expression of GA3-oxidase in leaves and GA mediated stem elongation in bioenergy sorghum." Scientific Reports 11,1, 46+ (2021). [DOI: 10.1038/s41598-020-79975-8] DOI Google Scholar
2021	Yue, F., Lan, W., Zhang, L., Lu, F., Sun, R. & Ralph, J. "Efficient synthesis of pinoresinol, an important lignin dimeric model compound." Frontiers in Energy Research 9, 640337+ (2021). [DOI: 10.3389/fenrg.2021.640337] DOI Google Scholar
2021	Yurkov, A., Alves, A., Bai, F.-Y., Boundy-Mills, K., Buzzini, P., Cadez, N., Cardinali, G., Casaregola, S., Chaturvedi, V., Collin, V., et al. "Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes." IMA Fungus 12,1, 18+ (2021). [DOI: 10.1186/s43008-021-00067-x] DOI Google Scholar
2021	Zhalnina, K., Hawkes, C., Shade, A., Firestone, M.K. & Pett-Ridge, J. "Managing plant microbiomes for sustainable biofuel production." Phytobiomes Journal 5,1, 3-13+ (2021). [DOI: 10.1094/PBIOMES-12-20-0090-E] DOI Google Scholar
2021	Zhang, B., Penton, R., Yu, Z., Xue, C., Chen, Q., Chen, Z., Yan, C., Zhang, Q., Zhao, M., Quensen, J.F., et al. "A new primer set for Clade I nosZ that recovers genes from a broader range of taxa." Biology and Fertility of Soils 57,4, 523-531+ (2021). [DOI: 10.1007/s00374-021-01544-6] DOI Google Scholar	Sustainability
2021	Zhang, J., Shen, W., Collings, C., Meulen, K.A.V., Fox, B.G., Ramos, L.M.V., Dumesic, J.A. & Ding, S.-Y. "Visualizing plant cell wall changes proves the superiority of hydrochloric acid over sulfuric acid catalyzed γ-valerolactone pretreatment." Chemical Engineering Journal 412, 128660+ (2021). [DOI: 10.1016/j.cej.2021.128660] DOI Google Scholar
2021	Zhang, L., MacQueen, A., Bonnette, J., Fritschi, F.B., Lowry, D.B. & Juenger, T.E. "QTL x environment interactions underlie ionome divergence in switchgrass." G3: Genes \| Genomes \| Genetics 11,7, (2021). [DOI: 10.1093/g3journal/jkab144] DOI Google Scholar	Sustainability
2021	Zhang, X., Lark, T.J., Clark, C.M., Yuan, Y. & LeDuc, S.D. "Grassland-to-cropland conversion increased soil, nutrient, and carbon losses in the US Midwest between 2008 and 2016." Environmental Research Letters 16,5, 054018+ (2021). [DOI: 10.1088/1748-9326/abecbe] DOI Google Scholar	Sustainability
2021	Zhou, P., Sanchez-Rivera, K.L., Huber, G.W. & Van Lehn, R.C. "Computational approach for rapidly predicting temperature-dependent polymer solubilities using molecular-scale models." ChemSusChem 14,19, 4307-4316+ (2021). [DOI: 10.1002/cssc.202101137] DOI Google Scholar
2020	Abbas, M., Peszlen, I., Shi, R., Kim, H., Katahira, R., Kafle, K., Xiang, Z., Huang, X., Min, D., Mohamadamin, M., et al. "Involvement of CesA4, CesA7-A/B and CesA8-A/B in secondary wall formation in Populus trichocarpa wood." Tree Physiology 40,1, 73-89+ (2020). [DOI: 10.1093/treephys/tpz020] DOI Google Scholar
2020	Abraha, M., Chen, J., Hamilton, S.K. & Robertson, P. "Long-term evapotranspiration rates for rainfed corn and perennial bioenergy crops in a mesic landscape." Hydrological Processes 34,3, 810-822+ (2020). [DOI: 10.1002/hyp.13630] DOI Google Scholar	Sustainability
2020	Albrecht, M., Kleijn, D., Williams, N.M., Tschumi, M., Blaauw, B.R., Bommarco, R., Campbell, A.J., Dainese, M., Drummond, F.A., Entling, M.H., et al. "The effectiveness of flower strips and hedgerows on pest control, pollination services and crop yield: a quantitative synthesis." Ecology Letters 23,10, 1488-1498+ (2020). [DOI: 10.1111/ele.13576] DOI Google Scholar	Sustainability
2020	Azodi, C.B., Lloyd, J.P. & Shiu, S.-H. "The cis-regulatory codes of response to combined heat and drought stress in Arabidopsis thaliana." NAR Genomics and Bioinformatics 2,3, (2020). [DOI: 10.1093/nargab/lqaa049] DOI Google Scholar
2020	Azodi, C.B., Pardo, J., VanBuren, R., Campos, G. de L. & Shiu, S.-H. "Transcriptome-based prediction of complex traits in maize." The Plant Cell 32, 139-151+ (2020). [DOI: 10.1105/tpc.19.00332] DOI Google Scholar
2020	Azodi, C.B., Tang, J. & Shiu, S.-H. "Opening the black box: interpretable machine learning for geneticists." Trends in Genetics 36,6, 442-455+ (2020). [DOI: 10.1016/j.tig.2020.03.005] DOI Google Scholar
2020	Banerjee, R., Weisenhorn, E., Schwartz, K.J., Myers, K.S., Glasner, J.D., Perna, N.T., Coon, J.J., Welch, R.A. & Kiley, P.J. "Tailoring a global iron regulon to a uropathogen." mBio 11,2, (2020). [DOI: 10.1128/mBio.00351-20] DOI Google Scholar
2020	Banta, A.B., Enright, A.L., Siletti, C. & Peters, J.M. "A high-efficacy CRISPR interference system for gene function discovery in Zymomonas mobilis." Applied and Environmental Microbiology 86,23, (2020). [DOI: 10.1128/AEM.01621-20] DOI Google Scholar
2020	Banta, A.B., Ward, R.D., Tran, J.S., Bacon, E.E. & Peters, J.M. "Programmable gene knockdown in diverse bacteria using mobile-CRISPRi." Current Protocols in Microbiology 59,1, (2020). [DOI: 10.1002/cpmc.130] DOI Google Scholar
2020	Bao, Y., Song, W.-M., Wang, P., Yu, X., Li, B., Jiang, C., Shiu, S.-H., Zhang, H. & Bassham, D.C. "COST1 regulates autophagy to control plant drought tolerance." Proceedings of the National Academy of Sciences of the United States of America 117,13, 7482-7493+ (2020). [DOI: 10.1073/pnas.1918539117] DOI Google Scholar	Sustainability

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