Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2019
Banerjee, A., Arnesen, J.A., Moser, D., Motsa, B.B., Johnson, S.R. & Hamberger, B. "Engineering modular diterpene biosynthetic pathways in Physcomitrella patens." Planta 249,1, 221-233+ (2019). [DOI: 10.1007/s00425-018-3053-0]
Feedstocks
2019
Basso, B., Shuai, G., Zhang, J. & Robertson, P. "Yield stability analysis reveals sources of large-scale nitrogen loss from the US Midwest." Scientific Reports 9, 5774+ (2019). [DOI: 10.1038/s41598-019-42271-1]
2019
Benucci, G.M.N., Haridas, S., LaButti, K., Marozzi, G., Antonielli, L., Sanchez, S., Marco, P., Wang, X., Barry, K., Lipzen, A., et al. "Draft genome sequence of the ectomycorrhizal ascomycete Sphaerosporella brunnea." Microbiology Resource Announcements 8,50, (2019). [DOI: 10.1128/mra.00857-19]
Sustainability
2019
Bhalla, A., Cai, C.M., Xu, F., Singh, S.K., Bansal, N., Phongpreecha, T., Dutta, T., Foster, C.E., Kumar, R., Simmons, B.A., et al. "Performance of three delignifying pretreatments on hardwoods: hydrolysis yields, comprehensive mass balances, and lignin properties." Biotechnology for Biofuels 12, 213+ (2019). [DOI: 10.1186/s13068-019-1546-0]
Deconstruction
2019
Bonito, G., Benucci, G.M.N., Hameed, K., Weighill, D., Jones, P., Chen, K.-H., Jacobson, D., Schadt, C. & Vilgalys, R. "Fungal-bacterial networks in the Populus rhizobiome are impacted by soil properties and host genotype." Frontiers in Microbiology 10, 481+ (2019). [DOI: 10.3389/fmicb.2019.00481]
Sustainability
2019
Bowsher, A.W., Kearns, P.J. & Shade, A. "16S rRNA/rRNA gene ratios and cell activity staining reveal consistent patterns of microbial activity in plant-associated soil." mSystems 4,2, (2019). [DOI: 10.1128/mSystems.00003-19]
2019
Cadez, N., Bellora, N., Ulloa, R., Hittinger, C.T. & Libkind, D. "Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina." PLOS ONE 14,1, (2019). [DOI: 10.1371/journal.pone.0210792]
Conversion
2019
Cao, P., Kim, S.-J., Xing, A., Schenck, C.A., Liu, L., Jiang, N., Wang, J., Last, R.L. & Brandizzi, F. "Homeostasis of branched-chain amino acids is critical for the activity of TOR signaling in Arabidopsis." Elife 8, (2019). [DOI: 10.7554/eLife.50747]
2019
Chen, J., Sciusco, P., Ouyang, Z., Zhang, R., Henebry, G.M., John, R. & Roy, D.P. "Linear downscaling from MODIS to landsat: connecting landscape composition with ecosystem functions." Landscape Ecology 34,12, 2917–2934+ (2019). [DOI: 10.1007/s10980-019-00928-2]
Sustainability
2019
Sousa, L. da C., Humpula, J., Balan, V., Dale, B.E. & Chundawat, S.P.S. "Impact of ammonia pretreatment conditions on the cellulose III allomorph ultrastructure and its enzymatic digestibility." ACS Sustainable Chemistry & Engineering 7,17, 14411-14424+ (2019). [DOI: 10.1021/acssuschemeng.9b00606]
Deconstruction
2019
Daly, P., McClellan, C., Maluk, M., Oakey, H., Lapierre, C., Waugh, R., Stephens, J., Marshall, D., Barakate, A., Tsuji, Y., et al. "RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family." Plant Biotechnology Journal 17,3, 594-607+ (2019). [DOI: 10.1111/pbi.13001]
Feedstocks
2019
Donohue, T.J. "Shedding light on a Group IV (ECF11) alternative sigma factor." Molecular Microbiology 112,2, 374-384+ (2019). [DOI: 10.1111/mmi.14280]
2019
Du, Z.-Y., Zienkiewicz, K., Pol, N.V., Ostrom, N.E., Benning, C. & Bonito, G.M. "Algal-fungal symbiosis leads to photosynthetic mycelium." eLife 8, (2019). [DOI: 10.7554/eLife.47815]
Feedstocks, Sustainability
2019
Dulys-Nusbaum, E., Klammer, S.S.H. & Swinton, S.M. "How willing are different types of landowner to supply hardwood timber residues for bioenergy?" Biomass and Bioenergy 122, 45-52+ (2019). [DOI: 10.1016/j.biombioe.2019.01.026]
Sustainability
2019
Duncan, D.S., Oates, L.G., Gelfand, I., Millar, N., Robertson, P. & Jackson, R.D. "Environmental factors function as constraints on soil nitrous oxide fluxes in bioenergy feedstock cropping systems." Global Change Biology – Bioenergy 11,2, 416-426+ (2019). [DOI: 10.1111/gcbb.12572]
Sustainability
2019
Dunivin, T.K., Choi, J., Howe, A. & Shade, A. "RefSoil+: a reference database for genes and traits of soil plasmids." mSystems 4,1, (2019). [DOI: 10.1128/mSystems.00349-18]
Sustainability
2019
Elder, T., del Río, J.C., Ralph, J., Rencoret, J., Kim, H. & Beckham, G.T. "Radical coupling reactions of piceatannol and monolignols: A density functional theory study." Phytochemistry 164, 12-23+ (2019). [DOI: 10.1016/j.phytochem.2019.04.003]
Feedstocks
2019
Fasahati, P., Liu, J., Ohlrogge, J.B. & Saffron, C.M. "Process design and economics for production of advanced biofuels from genetically modified lipid-producing sorghum." Applied Energy 239, 1459-1470+ (2019). [DOI: 10.1016/j.apenergy.2019.01.143]
Deconstruction
2019
Felczak, M.M., Jacobson, T.B., Ong, W.K., Amador-Noguez, D. & TerAvest, M.A. "Expression of phosphofructokinase is not sufficient to enable Embden-Meyerhof-Parnas glycolysis in Zymomonas mobilis ZM4." Frontiers in Microbiology 10, 2270+ (2019). [DOI: 10.3389/fmicb.2019.02270]
2019
Gage, J.L., Vaillancourt, B., Hamilton, J.P., Manrique-Carpintero, N.C., Gustafson, T.J., Barry, K., Lipzen, A., Tracy, W.F., Mikel, M.A., Kaeppler, S.M., et al. "Multiple maize reference genomes impact the identification of variants by genome-wide association study in a diverse inbred panel." The Plant Genome 12,2, 1-12+ (2019). [DOI: 10.3835/plantgenome2018.09.0069]
Feedstocks
2019
Garedew, M., Young-Farhat, D., Jackson, J.E. & Saffron, C.M. "Electrocatalytic upgrading of phenolic compounds observed after lignin pyrolysis." ACS Sustainable Chemistry & Engineering 7,9, 8375-8386+ (2019). [DOI: 10.1021/acssuschemeng.9b00019]
Deconstruction
2019
Ghosh, I.N., Martien, J., Hebert, A.S., Zhang, Y., Coon, J.J., Amador-Noguez, D. & Landick, R. "OptSSeq explores enzyme expression and function landscapes to maximize isobutanol production rate." Metabolic Engineering 52, 324-340+ (2019). [DOI: 10.1016/j.ymben.2018.12.008]
Conversion
2019
Glasgow, E.M., Meulen, K.A.V., Takasuka, T.E., Bianchetti, C.M., Bergeman, L.F., Deutsch, S. & Fox, B.G. "Extent and origins of functional diversity in a subfamily of glycoside hydrolases." Journal of Molecular Biology 431,6, 1217-1233+ (2019). [DOI: 10.1016/j.jmb.2019.01.024]
Deconstruction
2019
Grabber, J.H., Davidson, C., Tobimatsu, Y., Kim, H., Lu, F., Zhu, Y., Opietnik, M., Santoro, N., Foster, C.E., Yue, F., et al. "Structural features of alternative lignin monomers associated with improved digestibility of artificially lignified maize cell walls." Plant Science 287, 110070+ (2019). [DOI: 10.1016/j.plantsci.2019.02.004]
Feedstocks
2019
Grady, K.L., Sorensen, J.W., Stopnisek, N., Guittar, J. & Shade, A. "Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops." Nature Communications 10,1, 4135+ (2019). [DOI: 10.1038/s41467-019-11974-4]