Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2022	Kim, T.N., Bukhman, Y.V., Jusino, M.A., Scully, E.D., Spiesman, B.J. & Gratton, C. "Using high-throughput amplicon sequencing to determine diet of generalist lady beetles in agricultural landscapes." Biological Control 170, 104920+ (2022). [DOI: 10.1016/j.biocontrol.2022.104920] DOI Google Scholar	Sustainability
2022	Kittredge, H.A., Dougherty, K.M. & Evans, S.E. "Dead but not forgotten: how extracellular DNA, moisture, and space modulate the horizontal transfer of extracellular antibiotic resistance genes in soil." Environmental Microbiology 88,7, (2022). [DOI: 10.1128/aem.02280-21] DOI Google Scholar	Sustainability
2022	Ko, D.K. & Brandizzi, F. "Advanced genomics identifies growth effectors for proteotoxic ER stress recovery in Arabidopsis thaliana." Communications Biology 5, 16+ (2022). [DOI: 10.1038/s42003-021-02964-8] DOI Google Scholar
2022	Ko, D.K. & Brandizzi, F. "Transcriptional competition shapes proteotoxic ER stress resolution." Nature Plants 8,5, 481-490+ (2022). [DOI: 10.1038/s41477-022-01150-w] DOI Google Scholar
2022	Krause, D.J. & Hittinger, C.T. "Functional divergence in a multi-gene family is a key evolutionary innovation for anaerobic growth in Saccharomyces cerevisiae." Molecular Biolology and Evolution 39,10, (2022). [DOI: 10.1093/molbev/msac202] DOI Google Scholar
2022	Kravchenko, A.N., Richardson, J.A., Lee, J.H. & Guber, A.K. "Distribution of Mn oxidation states in grassland soils and their relationships with soil pores." Environmental Science & Technology 56,22, 16462-16472+ (2022). [DOI: 10.1021/acs.est.2c05403] DOI Google Scholar
2022	Lakey, B.D., Myers, K.S., Alberge, F., Mettert, E.L., Kiley, P.J., Noguera, D.R. & Donohue, T.J. "The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis." PLOS Genetics 18,6, (2022). [DOI: 10.1371/journal.pgen.1010270] DOI Google Scholar
2022	Lal, P.B., Wells, F. & Kiley, P.J. "Creation of markerless genome modifications in a nonmodel bacterium by fluorescence-aided recombineering." Methods in Molecular Biology 2479, 53-70+ (2022). [DOI: 10.1007/978-1-0716-2233-9_5] DOI Google Scholar
2022	Lamb, A., Weers, B., McKinley, B., Rooney, W., Morgan, C., Marshalll-Colon, A. & Mullet, J. "Bioenergy sorghum’s deep roots: a key to sustainable biomass production on annual cropland." Global Change Biology – Bioenergy 14,2, 132-156+ (2022). [DOI: 10.1111/gcbb.12907] DOI Google Scholar
2021	Lark, T.J., Schelly, I.H. & Gibbs, H.K. "Accuracy, bias, and improvements in mapping crops and cropland across the United States using the USDA cropland data layer." Remote Sensing 13,5, 968+ (2021). [DOI: 10.3390/rs13050968] DOI Google Scholar	Sustainability
2021	Lawson, C.E., Mundinger, A.B., Koch, H., Jacobson, T.B., Weathersby, C.A., Jetten, M.S.M., Pabst, M., Amador-Noguez, D., Noguera, D.R., McMahon, K., et al. "Investigating the chemolithoautotrophic and formate metabolism of Nitrospira moscoviensis by constraint-based metabolic modeling and 13C-tracer analysis." mSystems 6,4, (2021). [DOI: 10.1128/mSystems.00173-21] DOI Google Scholar
2021	Lee, S.-B., Tremaine, M., Place, M., Liu, L., Pier, A., Krause, D.J., Xie, D., Zhang, Y., Landick, R., Gasch, A.P., et al. "Crabtree/Warburg-like aerobic xylose fermentation by engineered Saccharomyces cerevisiae." Metabolic Engineering 68, 119-130+ (2021). [DOI: 10.1016/j.ymben.2021.09.008] DOI Google Scholar
2021	Lei, C., Abraha, M., Chen, J. & Su, Y.-J. "Long-term variability of root production in bioenergy crops from ingrowth core measurements." Journal of Plant Ecology 14,5, 757-770+ (2021). [DOI: 10.1093/jpe/rtab018] DOI Google Scholar	Sustainability
2021	Leichty, S.I., Kasanke, C.P., Bell, S.L. & Hofmockel, K.S. "Site and bioenergy cropping system similarly affect distinct live and total soil microbial communities." Frontiers in Microbiology 12, 725756+ (2021). [DOI: 10.3389/fmicb.2021.725756] DOI Google Scholar
2021	Li, B.-B., Roley, S.S., Duncan, D.S., Guo, J., Quensen, J.F., Yu, H.-Q. & Tiedje, J.M. "Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses." Soil Biology and Biochemistry 160, 108349+ (2021). [DOI: 10.1016/j.soilbio.2021.108349] DOI Google Scholar	Sustainability
2021	Li, H., Young, S.E., Poulsen, M. & Currie, C.R. "Symbiont-mediated digestion of plant biomass in fungus-farming insects." Annual Review of Entomology 66, 297-316+ (2021). [DOI: 10.1146/annurev-ento-040920-061140] DOI Google Scholar
2021	Li, Y., Steenwyk, J.L., Chang, Y., Wang, Y., James, T.Y., Stajich, J.E., Spatafora, J.W., Groenewald, M., Dunn, C.W., Hittinger, C.T., et al. "A genome-scale phylogeny of the kingdom Fungi." Current Biology 31,8, 1653-1665+ (2021). [DOI: 10.1016/j.cub.2021.01.074] DOI Google Scholar
2021	Liang, D. & Robertson, P. "Nitrification is a minor source of nitrous oxide (N2O) in agricultural landscapes and declines with increasing management intensity." Global Change Biology 27,21, 5599-5613+ (2021). [DOI: 10.1111/gcb.15833] DOI Google Scholar	Sustainability
2021	Liber, J.A., Bonito, G. & Benucci, G.M.N. "CONSTAX2: improved taxonomic classification of environmental DNA markers." Bioinformatics 37,21, 3941-3943+ (2021). [DOI: 10.1093/bioinformatics/btab347] DOI Google Scholar Data	Sustainability
2021	Linz, A.M., Ma, Y., Perez, J.M., Myers, K.S., Kontur, W.S., Noguera, D.R. & Donohue, T.J. "Aromatic dimer dehydrogenases from Novosphingobium aromaticivorans reduce monoaromatic diketones." Applied and Environmental Microbiology 87,24, (2021). [DOI: 10.1128/AEM.01742-21] DOI Google Scholar
2021	Liu, X., Van Acker, R., Voorend, W., Pallidis, A., Goeminne, G., Pollier, J., Morreel, K., Kim, H., Muylle, H., Bosio, M., et al. "Rewired phenolic metabolism and improved saccharification efficiency of a Zea mays cinnamyl alcohol dehydrogenase 2 (zmcad2) mutant." The Plant Journal 105,5, 1240-1257+ (2021). [DOI: 10.1111/tpj.15108] DOI Google Scholar
2021	Lovell, J.T., MacQueen, A.H., Mamidi, S., Bonnette, J., Jenkins, J., Napier, J.D., Sreedasyam, A., Healey, A., Session, A., Shu, S., et al. "Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass." Nature 590, 438–444+ (2021). [DOI: 10.1038/s41586-020-03127-1] DOI Google Scholar	Feedstocks, Sustainability
2021	Lu, F., Wang, C., Chen, M. & Ralph, J. "A facile spectroscopic method for measuring lignin content in lignocellulosic biomass." Green Chemistry 23,14, 5106-5112+ (2021). [DOI: 10.1039/D1GC01507A] DOI Google Scholar
2021	Luo, H., Weeda, E.P., Alherech, M., Anson, C.W., Karlen, S.D., Cui, Y., Foster, C.E. & Stahl, S.S. "Oxidative catalytic fractionation of lignocellulosic biomass under non-alkaline conditions." Journal of the American Chemical Society 143,37, 15462-15470+ (2021). [DOI: 10.1021/jacs.1c08635] DOI Google Scholar	Deconstruction
2021	Ma, Y., Donohue, T.J. & Noguera, D.R. "Kinetic modeling of anaerobic degradation of plant-derived aromatic mixtures by Rhodopseudomonas palustris." Biodegradation 32,2, 179–192+ (2021). [DOI: 10.1007/s10532-021-09932-3] DOI Google Scholar