Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2021
Lark, T.J., Schelly, I.H. & Gibbs, H.K. "Accuracy, bias, and improvements in mapping crops and cropland across the United States using the USDA cropland data layer." Remote Sensing 13,5, 968+ (2021). [DOI: 10.3390/rs13050968]
Sustainability
2021
Lawson, C.E., Mundinger, A.B., Koch, H., Jacobson, T.B., Weathersby, C.A., Jetten, M.S.M., Pabst, M., Amador-Noguez, D., Noguera, D.R., McMahon, K., et al. "Investigating the chemolithoautotrophic and formate metabolism of Nitrospira moscoviensis by constraint-based metabolic modeling and 13C-tracer analysis." mSystems 6,4, (2021). [DOI: 10.1128/mSystems.00173-21]
2021
Lee, S.-B., Tremaine, M., Place, M., Liu, L., Pier, A., Krause, D.J., Xie, D., Zhang, Y., Landick, R., Gasch, A.P., et al. "Crabtree/Warburg-like aerobic xylose fermentation by engineered Saccharomyces cerevisiae." Metabolic Engineering 68, 119-130+ (2021). [DOI: 10.1016/j.ymben.2021.09.008]
2021
Lei, C., Abraha, M., Chen, J. & Su, Y.-J. "Long-term variability of root production in bioenergy crops from ingrowth core measurements." Journal of Plant Ecology 14,5, 757-770+ (2021). [DOI: 10.1093/jpe/rtab018]
Sustainability
2021
Leichty, S.I., Kasanke, C.P., Bell, S.L. & Hofmockel, K.S. "Site and bioenergy cropping system similarly affect distinct live and total soil microbial communities." Frontiers in Microbiology 12, 725756+ (2021). [DOI: 10.3389/fmicb.2021.725756]
2021
Li, B.-B., Roley, S.S., Duncan, D.S., Guo, J., Quensen, J.F., Yu, H.-Q. & Tiedje, J.M. "Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses." Soil Biology and Biochemistry 160, 108349+ (2021). [DOI: 10.1016/j.soilbio.2021.108349]
Sustainability
2021
Li, H., Young, S.E., Poulsen, M. & Currie, C.R. "Symbiont-mediated digestion of plant biomass in fungus-farming insects." Annual Review of Entomology 66, 297-316+ (2021). [DOI: 10.1146/annurev-ento-040920-061140]
2021
Li, Y., Steenwyk, J.L., Chang, Y., Wang, Y., James, T.Y., Stajich, J.E., Spatafora, J.W., Groenewald, M., Dunn, C.W., Hittinger, C.T., et al. "A genome-scale phylogeny of the kingdom Fungi." Current Biology 31,8, 1653-1665+ (2021). [DOI: 10.1016/j.cub.2021.01.074]
2021
Liang, D. & Robertson, P. "Nitrification is a minor source of nitrous oxide (N2O) in agricultural landscapes and declines with increasing management intensity." Global Change Biology 27,21, 5599-5613+ (2021). [DOI: 10.1111/gcb.15833]
Sustainability
2021
Liber, J.A., Bonito, G. & Benucci, G.M.N. "CONSTAX2: improved taxonomic classification of environmental DNA markers." Bioinformatics 37,21, 3941-3943+ (2021). [DOI: 10.1093/bioinformatics/btab347]
Sustainability
2021
Linz, A.M., Ma, Y., Perez, J.M., Myers, K.S., Kontur, W.S., Noguera, D.R. & Donohue, T.J. "Aromatic dimer dehydrogenases from Novosphingobium aromaticivorans reduce monoaromatic diketones." Applied and Environmental Microbiology 87,24, (2021). [DOI: 10.1128/AEM.01742-21]
2021
Liu, X., Van Acker, R., Voorend, W., Pallidis, A., Goeminne, G., Pollier, J., Morreel, K., Kim, H., Muylle, H., Bosio, M., et al. "Rewired phenolic metabolism and improved saccharification efficiency of a Zea mays cinnamyl alcohol dehydrogenase 2 (zmcad2) mutant." The Plant Journal 105,5, 1240-1257+ (2021). [DOI: 10.1111/tpj.15108]
2021
Lovell, J.T., MacQueen, A.H., Mamidi, S., Bonnette, J., Jenkins, J., Napier, J.D., Sreedasyam, A., Healey, A., Session, A., Shu, S., et al. "Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass." Nature 590, 438–444+ (2021). [DOI: 10.1038/s41586-020-03127-1]
Feedstocks, Sustainability
2021
Lu, F., Wang, C., Chen, M. & Ralph, J. "A facile spectroscopic method for measuring lignin content in lignocellulosic biomass." Green Chemistry 23,14, 5106-5112+ (2021). [DOI: 10.1039/D1GC01507A]
2021
Luo, H., Weeda, E.P., Alherech, M., Anson, C.W., Karlen, S.D., Cui, Y., Foster, C.E. & Stahl, S.S. "Oxidative catalytic fractionation of lignocellulosic biomass under non-alkaline conditions." Journal of the American Chemical Society 143,37, 15462-15470+ (2021). [DOI: 10.1021/jacs.1c08635]
Deconstruction
2021
Ma, Y., Donohue, T.J. & Noguera, D.R. "Kinetic modeling of anaerobic degradation of plant-derived aromatic mixtures by Rhodopseudomonas palustris." Biodegradation 32,2, 179–192+ (2021). [DOI: 10.1007/s10532-021-09932-3]
2021
Maestrini, B. & Basso, B. "Subfield crop yields and temporal stability in thousands of US Midwest fields." Precision Agriculture 22,6, 1749–1767+ (2021). [DOI: 10.1007/s11119-021-09810-1]
Sustainability
2021
Martien, J.I., Trujillo, E.A., Jacobson, T.B., Tatli, M., Hebert, A.S., Stevenson, D.M., Coon, J.J. & Amador-Noguez, D. "Metabolic remodeling during nitrogen fixation in Zymomonas mobilis." mSystems 6,6, (2021). [DOI: 10.1128/mSystems.00987-21]
2021
McDaniel, E.A., Moya-Flores, F., Beach, N.K., Camejo, P.Y., Oyserman, B.O., Kizaric, M., Khor, E.H., Noguera, D.R. & McMahon, K.D. "Metabolic differentiation of co-occurring Accumulibacter clades revealed through genome-resolved metatranscriptomics." mSystems 6,4, (2021). [DOI: 10.1128/mSystems.00474-21]
2021
McDaniel, E.A., Wever, R., Oyserman, B.O., Noguera, D.R. & McMahon, K.D. "Genome-resolved metagenomics of a photosynthetic bioreactor performing biological nutrient removal." Microbiology Resource Announcements 10,18, (2021). [DOI: 10.1128/MRA.00244-21]
2021
Mosier, S., Córdova, C.S. & Robertson, P. "Restoring soil fertility on degraded lands to meet food, fuel, and climate security needs via perennialization." Frontiers in Sustainable Food Systems 5, 706142+ (2021). [DOI: 10.3389/fsufs.2021.706142]
2021
Murphy, E.K., Mottiar, Y., Soolanayakanahally, R.Y. & Mansfield, S.D. "Variations in cell wall traits impact saccharification potential of Salix famelica and Salix eriocephala." Biomass & Bioenergy 148, 106051+ (2021). [DOI: 10.1016/j.biombioe.2021.106051]
Feedstocks
2021
Myers, K.S., Noguera, D.R. & Donohue, T.J. "Promoter architecture differences among Alphaproteobacteria and other bacterial taxa." mSystems 6,4, (2021). [DOI: 10.1128/mSystems.00526-21]
2021
Myers, K.S., Place, M., Kominek, J., Noguera, D.R. & Donohue, T.J. "Delila-PY, a pipeline for utilizing the Delila suite of software to identify potential DNA binding motifs." Microbiology Resource Announcements 10,15, (2021). [DOI: 10.1128/MRA.00160-21]
2021
Nayfach, S., Roux, S., Seshadri, R., Udwary, D., Varghese, N., Schulz, F., Wu, D., Paez-Espino, D., Chen, I.-M., Huntemann, M., et al. "A genomic catalog of Earth's microbiomes." Nature Biotechnology 39,4, 499-509+ (2021). [DOI: 10.1038/s41587-020-0718-6]