Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2015	Truong, S.K., McCormick, R.F., Rooney, W.L. & Mullet, J.E. "Harnessing genetic variation in leaf angle to increase productivity of Sorghum bicolor." Genetics 201,3, 1229-1238+ (2015). [DOI: 10.1534/genetics.115.178608] DOI Google Scholar	Feedstocks
2015	Tsai, C.-H., Zienkiewicz, K., Amstutz, C.L., Brink, B.G., Warakanont, J., Roston, R. & Benning, C. "Dynamics of protein and polar lipid recruitment during lipid droplet assembly in Chlamydomonas reinhardtii." The Plant Journal 83,4, 650-660+ (2015). [DOI: 10.1111/tpj.12917] DOI Google Scholar	Feedstocks
2015	Tsuji, Y., Vanholme, R., Tobimatsu, Y., Ishikawa, Y., Foster, C.E., Kamimura, N., Hishiyama, S., Hashimoto, S., Shino, A., Hara, H., et al. "Introduction of chemically labile substructures into Arabidopsis lignin through the use of LigD, the Cα-dehydrogenase from Sphingobium sp. strain SYK-6." Plant Biotechnology Journal 13,6, 821-832+ (2015). [DOI: 10.1111/pbi.12316] DOI Google Scholar	Feedstocks
2015	Underkofler, K.A., Teixeira, R.E., Pietsch, S.A., Knapp, K.G. & Raines, R.T. "Separation of lignin from corn stover hydrolysate with quantitative recovery of ionic liquid." ACS Sustainable Chemistry and Engineering 3,4, 606-613+ (2015). [DOI: 10.1021/sc500731c] DOI Google Scholar	Conversion
2015	Wagner, A., Tobimatsu, Y., Phillips, L., Flint, H., Geddes, B., Lu, F. & Ralph, J. "Syringyl lignin production in conifers: proof of concept in a pine tracheary element system." Proceedings of the National Academy of Sciences of the United States of America 112,19, 6218-6223+ (2015). [DOI: 10.1073/pnas.1411926112] DOI Google Scholar	Feedstocks
2015	Walker, J.A., Takasuka, T.E., Deng, K., Bianchetti, C.M., Udell, H.S., Prom, B.M., Kim, H., Adams, P.D., Northen, T.R. & Fox, B.G. "Multifunctional cellulase catalysis targeted by fusion to different carbohydrate-binding modules." Biotechnology for Biofuels 8, 220+ (2015). [DOI: 10.1186/s13068-015-0402-0] DOI Google Scholar	Deconstruction
2015	Wang, Q., Fish, J.A., Gilman, M., Sun, Y., Brown, T., Tiedje, J.M. & Cole, J.R. "Xander: employing a novel method for efficient gene-targeted metagenomic assembly." Microbiome 3, 32+ (2015). [DOI: 10.1186/s40168-015-0093-6] DOI Google Scholar	Sustainability
2015	Wieder, W.R., Grandy, A.S., Kallenbach, C.M., Taylor, P.G. & Bonan, G.B. "Representing life in the Earth system with soil microbial functional traits in the MIMICS model." Geoscientific Model Development 8, 1789-1808+ (2015). [DOI: 10.5194/gmdd-8-2011-2015] DOI Google Scholar	Sustainability
2015	Wyman, C.E. & Dale, B.E. "Producing biofuels via the sugar platform." Chemical Engineering Progress Magazine 111,3, 45-57+ (2015). Google Scholar	Sustainability
2015	Xue, S., Uppugundla, N., Bowman, M.J., Cavalier, D., Sousa, L. da C., Dale, B.E. & Balan, V. "Sugar loss and enzyme inhibition due to oligosaccharide accumulation during high solids-loading enzymatic hydrolysis." Biotechnology for Biofuels 8, 195+ (2015). [DOI: 10.1186/s13068-015-0378-9] DOI Google Scholar	Deconstruction
2015	Yang, Y., Munz, J., Cass, C., Zienkiewicz, A., Kong, Q., Ma, W., Sedbrook, J. & Benning, C. "Ectopic expression of WRINKLED1 affects fatty acid homeostasis in Brachypodium distachyon vegetative tissues." Plant Physiology 169,3, 1836-1847+ (2015). [DOI: 10.1104/pp.15.01236] DOI Google Scholar	Feedstocks
2015	Zhang, B., Penton, R., Xue, C., Wang, Q., Zheng, T. & Tiedje, J.M. "Evaluation of the Ion Torrent Personal Genome Machine for gene-targeted studies using amplicons of the nitrogenase gene nifH." Applied and Environmental Microbiology 81,13, 4536-4545+ (2015). [DOI: 10.1128/AEM.00111-15] DOI Google Scholar	Sustainability
2015	Zhang, X., Izaurralde, R.C., Manowitz, D.H., Sahajpal, R., West, T.O., Thomson, A.M., Xu, M., Zhao, K., LeDuc, S.D. & Williams, J.R. "Regional scale cropland carbon budgets: evaluating a geospatial agricultural modeling system using inventory data." Environmental Modelling & Software 63, 199-216+ (2015). [DOI: 10.1016/j.envsoft.2014.10.005] DOI Google Scholar	Sustainability
2014	Alexander, H.M., Mauck, K.E., Whitfield, A.E., Garrett, K.A. & Malmstrom, C.M. "Plant-virus interactions and the agro-ecological interface." European Journal of Plant Pathology 138,3, 529-547+ (2014). [DOI: 10.1007/s10658-013-0317-1] DOI Google Scholar	Sustainability
2014	Alexander, W.G., Doering, D.T. & Hittinger, C.T. "High-efficiency genome editing and allele replacement in prototrophic and wild strains of Saccharomyces." Genetics 198,3, 859-866+ (2014). [DOI: 10.1534/genetics.114.170118] DOI Google Scholar	Conversion
2014	Almeida, P., Goncalves, C., Teixeira, S., Libkind, D., Bontrager, M., Masneuf-Pomarede, I., Albertin, W., Durrens, P., Sherman, D.J., Marullo, P., et al. "A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum." Nature Communications 5, 4044+ (2014). [DOI: 10.1038/ncomms5044] DOI Google Scholar	Conversion
2014	Aylward, F.O., Suen, G., Biedermann, P.H.W., Adams, A.S., Scott, J.J., Malfatti, S.A., del Rio, T.G., Tringe, S.G., Poulsen, M., Raffa, K.F., et al. "Convergent bacterial microbiotas in the fungal agricultural systems of insects." mBio 5,6, (2014). [DOI: 10.1128/mBio.02077-14] DOI Google Scholar	Deconstruction
2014	Azarpira, A., Ralph, J. & Lu, F. "Catalytic alkaline oxidation of lignin and its model compounds: a pathway to aromatic biochemicals." BioEnergy Research 7,1, 78-86+ (2014). [DOI: 10.1007/s12155-013-9348-x] DOI Google Scholar	Feedstocks
2014	Balan, V. "Current challenges in commercially producing biofuels from lignocellulosic biomass." ISRN Biotechnology Volume 2014, (2014). [DOI: 10.1155/2014/463074] DOI Google Scholar	Deconstruction
2014	Bates, P.D., Johnson, S.R., Cao, X., Li, J., Nam, J.-W., Jaworski, J.G., Ohlrogge, J.B. & Browse, J. "Fatty acid synthesis is inhibited by inefficient utilization of unusual fatty acids for glycerolipid assembly." Proceedings of the National Academy of Sciences of the United States of America 111,3, 1204-1209+ (2014). [DOI: 10.1073/pnas.1318511111] DOI Google Scholar	Feedstocks
2014	Beissinger, T.M., Hirsch, C.N., Vaillancourt, B., Deshpande, S., Barry, K., Buell, R., Kaeppler, S.M., Gianola, D. & de Leon, N. "A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number." Genetics 196,3, 829-40+ (2014). [DOI: 10.1534/genetics.113.160655] DOI Google Scholar	Feedstocks
2014	Bennett, A. & Isaacs, R. "Landscape composition influences pollinators and pollination services in perennial biofuel plantings." Agriculture, Ecosystems & Environment 193, 1-8+ (2014). [DOI: 10.1016/j.agee.2014.04.016] DOI Google Scholar	Sustainability
2014	Bennett, A.B., Meehan, T.D., Gratton, C. & Isaacs, R. "Modeling pollinator community response to contrasting bioenergy scenarios." PLOS ONE 9,11, (2014). [DOI: 10.1371/journal.pone.0110676] DOI Google Scholar	Sustainability
2014	Bhalla, A., Bischoff, K.M., Uppugundla, N., Balan, V. & Sani, R.K. "Novel thermostable endo-xylanase cloned and expressed from bacterium Geobacillus sp. WSUCF1." Bioresource Technology 165, 314-318+ (2014). [DOI: 10.1016/j.biortech.2014.03.112] DOI Google Scholar	Deconstruction
2014	Bonawitz, N.D., Kim, J.I., Tobimatsu, Y., Ciesielski, P.N., Anderson, N.A., Ximenes, E., Maeda, J., Ralph, J., Donohoe, B.S., Ladisch, M., et al. "Disruption of Mediator rescues the stunted growth of a lignin-deficient Arabidopsis mutant." Nature 509, 376-380+ (2014). [DOI: 10.1038/nature13084] DOI Google Scholar	Feedstocks