Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2015	Bianchetti, C.M., Takasuka, T.E., Deutsch, S., Udell, H.S., Yik, E.J., Bergeman, L.F. & Fox, B.G. "Active site and laminarin binding in glycoside hydrolase family 55." Journal of Biological Chemistry 290,19, 11819-11832+ (2015). [DOI: 10.1074/jbc.M114.623579] DOI Google Scholar	Deconstruction
2015	Brumm, P., Land, M.L., Hauser, L.J., Jeffries, C.D., Chang, Y.-juan & Mead, D.A. "Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park." Standards in Genomic Sciences 10, 81+ (2015). [DOI: 10.1186/s40793-015-0075-0] DOI Google Scholar	Deconstruction
2015	Brumm, P., Land, M.L., Hauser, L.J., Jeffries, C.D., Chang, Y.-juan & Mead, D.A. "Complete genome sequence of Geobacillus strain Y4.1MC1, a novel CO-utilizing Geobacillus thermoglucosidasius strain isolated from Bath Hot Spring in Yellowstone National Park." BioEnergy Research 8, 1039-1045+ (2015). [DOI: 10.1007/s12155-015-9585-2] DOI Google Scholar	Deconstruction
2015	Brumm, P.J., De Maayer, P., Mead, D.A. & Cowan, D.A. "Genomic analysis of six new Geobacillus strains reveals highly conserved carbohydrate degradation architectures and strategies." Frontiers in Microbiology 6, 430+ (2015). [DOI: 10.3389/fmicb.2015.00430] DOI Google Scholar	Deconstruction
2015	Brumm, P.J., Land, M.L. & Mead, D.A. "Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park." Standards in Genomic Sciences 10, 73+ (2015). [DOI: 10.1186/s40793-015-0031-z] DOI Google Scholar	Deconstruction
2015	Bukhman, Y.V., DiPiazza, N.W., Piotrowski, J., Shao, J., Halstead, A.G.W., Bui, M.D., Xie, E. & Sato, T.K. "Modeling microbial growth curves with GCAT." BioEnergy Research 8, 1022-1030+ (2015). [DOI: 10.1007/s12155-015-9584-3] DOI Google Scholar	Conversion
2015	Caes, B.R., Teixeira, R.E., Knapp, K.G. & Raines, R.T. "Biomass to furanics: renewable routes to chemicals and fuels." ACS Sustainable Chemistry and Engineering 3,11, 2591-2605+ (2015). [DOI: 10.1021/acssuschemeng.5b00473] DOI Google Scholar	Conversion
2015	Campioli, M., Vicca, S., Luyssaert, S., Bilcke, J., Ceschia, E., Ciais, P., Fernández-Martínez, M., Malhi, Y., Obersteiner, M., Olefeldt, D., et al. "Biomass production efficiency controlled by management in temperate and boreal ecosystems." Nature Geoscience 8, 843-846+ (2015). [DOI: 10.1038/ngeo2553] DOI Google Scholar	Sustainability
2015	Carpita, N.S., Ralph, J. & McCann, M. "The cell wall." in Biochemistry and Molecuar Biology of Plants, 2nd Edition. 45-110+ (Wiley, 2015). Google Scholar	Feedstocks
2015	Cass, C.L., Peraldi, A., Dowd, P.F., Mottiar, Y., Santoro, N., Karlen, S.D., Bukhman, Y.V., Foster, C.E., Thrower, N., Bruno, L.C., et al. "Effects of PHENYLALANINE AMMONIA LYASE (PAL) knockdown on cell wall composition, biomass digestibility, and biotic and abiotic stress responses in Brachypodium." Journal of Experimental Botany 66,14, 4317-4335+ (2015). [DOI: 10.1093/jxb/erv269] DOI Google Scholar	Feedstocks
2015	Clowers, K.J., Heilberger, J., Piotrowski, J.S., Will, J.L. & Gasch, A.P. "Ecological and genetic barriers differentiate natural populations of Saccharomyces cerevisiae." Molecular Biology and Evolution 32,9, 2317-2327+ (2015). [DOI: 10.1093/molbev/msv112] DOI Google Scholar	Conversion
2015	Clowers, K.J., Will, J.L. & Gasch, A.P. "A unique ecological niche fosters hybridization of oak-tree and vineyard isolates of Saccharomyces cerevisiae." Molecular Ecology 24,23, 5886-5898+ (2015). [DOI: 10.1111/mec.13439] DOI Google Scholar	Conversion
2015	Coelho, M.A., Almeida, J.M.G., Hittinger, C.T. & Goncalves, P. "Draft genome sequence of Sporidiobolus salmonicolor CBS 6832, a red-pigmented basidiomycetous yeast." Genome Announcements 3,3, 300444-15+ (2015). [DOI: 10.1128/genomeA.00444-15] DOI Google Scholar	Conversion
2015	Cornish, A.J., Green, R., Gärtner, K., Mason, S. & Hegg, E.L. "Charactization of hydrogen metabolism in the multicellular green alga Volvox carteri." PLOS ONE 10,4, (2015). [DOI: 10.1371/journal.pone.0125324] DOI Google Scholar	Deconstruction, Conversion
2015	Dale, B.E. & Holtzapple, M. "SBE Special Section: Lignocellulosic Biofuels – The Need for Biofuels." Chemical Engineering Progress Magazine 81,4, 57-69+ (2015). Google Scholar	Sustainability
2015	del Río, J.C., Lino, A.G., Colodette, J.L., Lima, C.F., Gutiérrez, A., Martínez, Á.T., Lu, F., Ralph, J. & Rencoret, J. "Differences in the chemical structure of the lignins from sugarcane bagasse and straw." Biomass and Bioenergy 81, 322-338+ (2015). [DOI: 10.1016/j.biombioe.2015.07.006] DOI Google Scholar	Feedstocks
2015	Deng, K., Guenther, J.M., Gao, J., Bowen, B.P., Tran, H., Reyes-Ortiz, V., Cheng, X., Sathitsuksanoh, N., Heins, R., Takasuka, T.E., et al. "Development of a high throughput platform for screening glycoside hydrolases based on oxime-NIMS." Frontiers in Bioengineering and Biotechnology 3, 153+ (2015). [DOI: 10.3389/fbioe.2015.00153] DOI Google Scholar	Deconstruction
2015	Deng, K., Takasuka, T.E., Bianchetti, C.M., Bergeman, L.F., Adam, P.D., Northen, T.R. & Fox, B.G. "Use of nanostructure initiator mass spectrometry to deduce selectivity of reaction in glycoside hydrolases." Frontiers in Bioengineering and Biotechnology 3, 165+ (2015). [DOI: 10.3389/fbioe.2015.00165] DOI Google Scholar	Deconstruction
2015	Dickson, T.L. & Gross, K.L. "Can the results of biodiversity-ecosystem productivity studies be translated to bioenergy production?" PLOS ONE 10,9, (2015). [DOI: 10.1371/journal.pone.0135253] DOI Google Scholar	Sustainability
2015	Dima, O., Morreel, K., Vanholme, B., Kim, H., Ralph, J. & Boerjan, W. "Small glycosylated lignin oligomers are stored in Arabidopsis leaf vacuoles." The Plant Cell 27,3, 695-710+ (2015). [DOI: 10.1105/tpc.114.134643] DOI Google Scholar	Feedstocks
2015	Egbendewe-Mondzozo, A., Swinton, S.M., Kang, S., Post, W.M., Binfield, J.C. & Thompson, W. "Bioenergy supply and environmental impacts on cropland: insights from multi-market forecasts in a Great Lakes subregional bioeconomic model." Applied Economic Perspectives and Policy 37,4, 602-618+ (2015). [DOI: 10.1093/aepp/ppu044] DOI Google Scholar	Sustainability
2015	Evans, J., Crisovan, E., Barry, K., Daum, C., Jenkins, J., Kunde-Ramamoorthy, G., Nandety, A., Ngan, C.Y., Vaillancourt, B., Wei, C.-L., et al. "Diversity and population structure of northern switchgrass as revealed through exome capture sequencing." The Plant Journal 84, 800-815+ (2015). [DOI: 10.1111/tpj.13041] DOI Google Scholar	Feedstocks
2015	Foerster, J.M., Beissinger, T., de Leon, N. & Kaeppler, S. "Large effect QTL explain natural phenotypic variation for the developmental timing of vegetative phase change in maize (Zea mays L.)." Theoretical and Applied Genetics 128,3, 529-538+ (2015). [DOI: 10.1007/s00122-014-2451-3] DOI Google Scholar	Feedstocks
2015	Gelfand, I., Cui, M., Tang, J. & Robertson, P. "Short-term drought response of N2O and CO2 emissions from mesic agricultural soils in the US Midwest." Agriculture, Ecosystems & Environment 212, 127-133+ (2015). [DOI: 10.1016/j.agee.2015.07.005] DOI Google Scholar	Sustainability
2015	Gelfand, I. & Robertson, P. "Mitigation of greenhouse gases in agricultural ecosystems." in The Ecology of Agricultural Landscapes: Long-Term Research on the Path to Sustainability. 419-458+ (Oxford University Press, 2015). [DOI: isbn: 978-0-19-977335-0] DOI Google Scholar	Sustainability