Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2022
Emery, S.M., Bell-Dereske, L., Stahlheber, K.A. & Gross, K.L. "Arbuscular mycorrhizal fungal community responses to drought and nitrogen fertilization in switchgrass stands." Applied Soil Ecology 169, 104218+ (2022). [DOI: 10.1016/j.apsoil.2021.104218]
Sustainability
2022
Fan, M., Jensen, J.K., Zemelis-Durfee, S., Kim, S.-J., Chan, J.-Y., Beaudry, C.M., Brandizzi, F. & Wilkerson, C.G. "Disruption of Brachypodium lichenase alters metabolism of mixed-linkage glucan and starch." The Plant Journal 109,4, 927-939+ (2022). [DOI: 10.1111/tpj.15603]
2022
Fang, Z., Jackson, J.E. & Hegg, E.L. "Mild, electroreductive lignin cleavage: optimizing the depolymerization of authentic lignins." ACS Sustainable Chemistry & Engineering 10,23, 7545–7552+ (2022). [DOI: 10.1021/acssuschemeng.2c00820]
2022
Felczak, M.M. & TerAvest, M.A. "Zymomonas mobilis ZM4 utilizes an NADP+-dependent acetaldehyde dehydrogenase to produce acetate." Journal of Bacteriology 204,4, (2022). [DOI: 10.1128/jb.00563-21]
2022
Fortney, N.W., Myers, K.S., Ingle, A.T., Walters, K.A., Scarborough, M.J., Donohue, T.J. & Noguera, D.R. "Metagenomes and metagenome-assembled genomes from microbiomes metabolizing thin stillage from an ethanol biorefinery." Microbiology Resource Announcements 11,8, (2022). [DOI: 10.1128/mra.00290-22]
2022
Fu, X., Gregory, L.M., Weise, S.E. & Walker, B.J. "Integrated flux and pool size analysis in plant central metabolism reveals unique roles of glycine and serine during photorespiration." Nature Plants DOI: 10.1038/s41477-022-01294-9, (2022). [DOI: 10.1038/s41477-022-01294-9]
2022
Gabaldon, T. & Hittinger, C.T. "Genomic insights on fungal hybrids." Frontiers in Fungal Biology 3, 1063609+ (2022). [DOI: 10.3389/ffunb.2022.1063609]
2022
Gambacorta, F.V., Dietrich, J.J., Baerwald, J.J., Brown, S.J., Su, Y. & Pfleger, B.F. "Combinatorial library design for improving isobutanol production in Saccharomyces cerevisiae." Frontiers in Bioengineering and Biotechnology 10, 1080024+ (2022). [DOI: 10.3389/fbioe.2022.1080024]
2022
Gambacorta, F.V., Wagner, E.R., Jacobson, T.B., Tremaine, M., Muehlbauer, L.K., McGee, M.A., Baerwald, J.J., Wrobel, R.L., Wolters, J.F., Place, M., et al. "Comparative functional genomics identifies an iron-limited bottleneck in a Saccharomyces cerevisiae strain with a cytosolic-localized isobutanol pathway." Synthetic and Systems Biotechnology 7, 738-749+ (2022). [DOI: 10.1016/j.synbio.2022.02.007]
2022
Geissler, C.H. & Maravelias, C.T. "Analysis of alternative bioenergy with carbon capture strategies: present and future." Energy & Environmental Science 15,7, 2679-2689+ (2022). [DOI: 10.1039/D2EE00625A]
2022
Gilcher, E.B., Chang, H., Huber, G.W. & Dumesic, J.A. "Controlled hydrogenation of a biomass-derived platform chemical formed by aldol-condensation of 5-hydroxymethyl furfural (HMF) and acetone over Ru, Pd, and Cu catalysts." Green Chemistry 24,5, 2146-2159+ (2022). [DOI: 10.1039/D1GC04650K]
2022
Goes, S.L., Nutting, J.E., Hill, N.J., Stahl, S.S. & Rafiee, M. "Exploring electrosynthesis: bulk electrolysis and cyclic voltammetry analysis of the Shono oxidation." Journal of Chemical Education 99,9, 3242-3248+ (2022). [DOI: 10.1021/acs.jchemed.2c00221]
Deconstruction
2022
Guber, A., Blagodatskaya, E. & Kravchenko, A. "Are enzymes transported in soils by water fluxes?" Soil Biology and Biochemistry 168, 108633+ (2022). [DOI: 10.1016/j.soilbio.2022.108633]
2022
Hall, B.W., Bingman, C.A., Fox, B.G., Noguera, D.R. & Donohue, T.J. "A broad specificity β-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including γ-valerolactone." Journal of Biological Chemistry 299,1, 102782+ (2022). [DOI: 10.1016/j.jbc.2022.102782]
2022
Harrison, M.-C., Labella, A.L., Hittinger, C.T. & Rokas, A. "The evolution of the GALactose utilization pathway in budding yeasts." Trends in Genetics 38,1, 97-106+ (2022). [DOI: 10.1016/j.tig.2021.08.013]
2022
Hellinger, J., Kim, H., Ralph, J. & Karlen, S.D. "p-Coumaroylation of lignin occurs outside of commelinid monocots in the eudicot genus Morus (mulberry)." Plant Physiology DOI: 10.1093/plphys/kiac485, (2022). [DOI: 10.1093/plphys/kiac485]
2022
Hoengenaert, L., Wouters, M., Kim, H., De Meester, B., Morreel, K., Vandersyppe, S., Pollier, J., Desmet, S., Goeminne, G., Ralph, J., et al. "Overexpression of the scopoletin biosynthetic pathway enhances lignocellulosic biomass processing." Science Advances 8,28, (2022). [DOI: 10.1126/sciadv.abo5738]
2022
Hu, S., Kamimura, N., Sakamoto, S., Nagano, S., Takata, N., Liu, S., Goeminne, G., Vanholme, R., Uesugi, M., Yamamoto, M., et al. "Rerouting of the lignin biosynthetic pathway by inhibition of cytosolic shikimate recycling in transgenic hybrid aspen." The Plant Journal 110,2, 358-376+ (2022). [DOI: 10.1111/tpj.15674]
2022
Huang, X., Wang, W., Gong, T., Wickell, D., Kuo, L.-Y., Zhang, X., Wen, J., Kim, H., Lu, F., Zhao, H., et al. "The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence." Nature Plants 8,5, 500-512+ (2022). [DOI: 10.1038/s41477-022-01146-6]
2022
Hussain, M.Z., Hamilton, S.K. & Robertson, P. "Soil phosphorus drawdown by perennial bioenergy cropping systems in the Midwestern US." Global Change Biology – Bioenergy 15,2, (2022). [DOI: 10.1111/gcbb.13020]
Sustainability
2022
Ingle, A.T., Fortney, N.W., Myers, K.S., Walters, K.A., Scarborough, M.J., Donohue, T.J. & Noguera, D.R. "Metagenome-assembled genomes from a microbiome grown in dairy manure hydrolysate." Microbiology Resource Announcements 11,8, (2022). [DOI: 10.1128/mra.00292-22]
2022
Je, L., Huber, G.W., Van Lehn, R.C. & Zavala, V.M. "On the integration of molecular dynamics, data science, and experiments for studying solvent effects on catalysis." Current Opinion in Chemical Engineering 36, 100796+ (2022). [DOI: 10.1016/j.coche.2022.100796]
2022
Khana, D.B., Callaghan, M.M. & Amador-Noguez, D. "Novel computational and experimental approaches for investigating the thermodynamics of metabolic networks." Current Opinion in Microbiology 66, 21-31+ (2022). [DOI: 10.1016/j.mib.2021.11.007]
2022
Khosrozadeh, S., Guber, A., Kravchenko, A., Ghaderi, N. & Blagodatskaya, E. "Soil oxidoreductase zymography: visualizing spatial distributions of peroxidase and phenol oxidase activities at the root-soil interface." Soil Biology and Biochemistry 167, 108610+ (2022). [DOI: 10.1016/j.soilbio.2022.108610]
2022
Kim, K., Gil, J., Ostrom, N.E., Gandhi, H., Oerther, M.S., Kuzyakov, Y., Guber, A.K. & Kravchenko, A.N. "Soil pore architecture and rhizosphere legacy define N2O production in root detritusphere." Soil Biology and Biochemistry 166, 108565+ (2022). [DOI: 10.1016/j.soilbio.2022.108565]