Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2020
Liang, D., Ouyang, Y., Tiemann, L. & Robertson, P. "Niche differentiation of bacterial versus archaeal soil nitrifiers induced by ammonium inhibition along a management gradient." Frontiers in Microbiology 11, 568588+ (2020). [DOI: 10.3389/fmicb.2020.568588]
Sustainability
2020
Libkind, D., Cadez, N., Opulente, D.A., Langdon, Q.K., Rosa, C.A., Sampaio, J.P., Goncalves, P., Hittinger, C.T. & Lachance, M.A. "Towards yeast taxogenomics: lessons from novel species descriptions based on complete genome sequences." FEMS Yeast Research 20,6, (2020). [DOI: 10.1093/femsyr/foaa042]
2020
Libkind, D., Peris, D., Cubillos, F.A., Steenwyk, J.L., Opulente, D.A., Langdon, Q.K., Rokas, A. & Hittinger, C.T. "Into the wild: new yeast genomes from natural environments and new tools for their analysis." FEMS Yeast Research 20,2, (2020). [DOI: 10.1093/femsyr/foaa008]
2020
Liu, W.-Y., Lin, H.-H., Yu, C.-P., Chang, C.-K., Chen, H.-J., Lin, J.-J., Lu, M.-Y.J., Tu, S.-L., Shiu, S.-H., Wu, S.-H., et al. "Maize ANT1 modulates vascular development, chloroplast development, photosynthesis, and plant growth." Proceedings of the National Academy of Sciences of the United States of America 117,35, 21747-21756+ (2020). [DOI: 10.1073/pnas.2012245117]
Sustainability
2020
Liu, X., Zhu, R., Chen, T., Song, P., Lu, F., Xu, F., Ralph, J. & Zhang, X. "Mild acetylation and solubilization of ground whole plant cell walls in EmimAc: a method for solution-state NMR in DMSO-d6." Analytical Chemistry 92,19, 13101–13109+ (2020). [DOI: 10.1021/acs.analchem.0c02124]
2020
Liu, Y., Ghosh, I.N., Martien, J., Zhang, Y., Amador-Noguez, D. & Landick, R. "Regulated redirection of central carbon flux enhances anaerobic production of bioproducts in Zymomonas mobilis." Metabolic Engineering 61, 261-274+ (2020). [DOI: 10.1016/j.ymben.2020.06.005]
2020
Luo, X., Li, Y., Gupta, N.K., Sels, B., Ralph, J. & Shuai, L. "Protection strategies enable selective conversion of biomass." Angewandte Chemie International Edition 59,29, 11704-11716+ (2020). [DOI: 10.1002/anie.201914703]
2020
MacGilvray, M.E., Shishkova, E., Place, M., Wagner, E.R., Coon, J.J. & Gasch, A.P. "Phosphoproteome response to dithiothreitol reveals unique versus shared features of Saccharomyces cerevisiae stress responses." Journal of Proteome Research 19, 3405-3417+ (2020). [DOI: 10.1021/acs.jproteome.0c00253]
2020
Magnoli, S.M. "Rapid adaptation (or not) in restored plant populations." Evolutionary Applications 13,8, 2030-2037+ (2020). [DOI: 10.1111/eva.12959]
Sustainability
2020
Magnoli, S.M. & Lau, J.A. "Novel plant–microbe interactions: rapid evolution of a legume–rhizobium mutualism in restored prairies." Journal of Ecology 108,4, 1241-1249+ (2020). [DOI: 10.1111/1365-2745.13366]
Sustainability
2020
Magnoli, S.M. & Lau, J.A. "Evolution in novel environments: Do restored prairie populations experience strong selection?" Ecology 101,10, (2020). [DOI: 10.1002/ecy.3120]
Sustainability
2020
Martinez-Feria, R. & Basso, B. "Predicting soil carbon changes in switchgrass grown on marginal lands under climate change and adaptation strategies." Global Change Biology – Bioenergy 12,9, 742-755+ (2020). [DOI: 10.1111/gcbb.12726]
Sustainability
2020
Martinez-Feria, R.A. & Basso, B. "Unstable crop yields reveal opportunities for site-specific adaptations to climate variability." Scientific Reports 10,1, 2885+ (2020). [DOI: 10.1038/s41598-020-59494-2]
Sustainability
2020
Miller, G.P., Bhat, W.W., Lanier, E.R., Johnson, S.R., Mathieu, D.T. & Hamberger, B. "The biosynthesis of the anti-microbial diterpenoid leubethanol in Leucophyllum frutescens proceeds via an all-cis prenyl intermediate." The Plant Journal 104,3, 693-705+ (2020). [DOI: 10.1111/tpj.14957]
2020
Myers, K.S., Place, M., Noguera, D.R. & Donohue, T.J. "COnTORT: COmprehensive Transcriptomic ORganizational Tool for simultaneously retrieving and organizing numerous gene expression data sets from the NCBI Gene Expression Omnibus database." Microbiology Resource Announcements 9,25, (2020). [DOI: 10.1128/MRA.00587-20]
2020
Myers, K.S., Vera, J.M., Lemmer, K.C., Linz, A.M., Landick, R., Noguera, D.R. & Donohue, T.J. "Genome-wide identification of transcription start sites in two Alphaproteobacteria, Rhodobacter sphaeroides 2.4.1 and Novosphingobium aromaticivorans DSM 12444." Microbiology Resource Announcements 9,36, (2020). [DOI: 10.1128/MRA.00880-20]
2020
Nayfach, S., Roux, S., Seshadri, R., Udwary, D., Varghese, N., Schulz, F., Wu, D., Paez-Espino, D., Chen, I.-M., Huntemann, M., et al. "A genomic catalog of Earth's microbiomes." Nature Biotechnology DOI: 10.1038/s41587-020-0718-6, (2020). [DOI: 10.1038/s41587-020-0718-6]
2020
Oliver, J., Fan, M., McKinley, B., Zemelis-Durfee, S., Brandizzi, F., Wilkerson, C. & Mullet, J.E. "The AGCVIII kinase Dw2 modulates cell proliferation, endomembrane trafficking, and MLG/xylan cell wall localization in elongating stem internodes of Sorghum bicolor." The Plant Journal DOI: 10.1111/tpj.15086, (2020). [DOI: 10.1111/tpj.15086]
2020
Ong, W.K., Courtney, D.K., Pan, S., Andrade, R.B., Kiley, P.J., Pfleger, B.F. & Reed, J.L. "Model-driven analysis of mutant fitness experiments improves genome-scale metabolic models of Zymomonas mobilis ZM4." PLOS Computational Biology 16,8, (2020). [DOI: 10.1371/journal.pcbi.1008137]
2020
Collaborative, O.C.B.E. "1.21: BioFuel Project." in Lab Manual: Introduction to Biotechnology. (Academic Senate for California Community Colleges Online Educational Resource Initiative (ASCCC-OERI), 2020). [DOI: none will be provided]
2020
Oshlag, Z., Ma, Y., Morse, K., Burger, B.T., Lemke, R.A., Karlen, S.D., Myers, K.S., Donohue, T.J. & Noguera, D.R. "Anaerobic degradation of syringic acid by an adapted strain of Rhodopseudomonas palustris." Applied and Environmental Microbiology 86,3, (2020). [DOI: 10.1128/AEM.01888-19]
Conversion
2020
Panchy, N.L., Lloyd, J.P. & Shiu, S.-H. "Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data." BMC Genomics 21,1, 159+ (2020). [DOI: 10.1186/s12864-020-6554-8]
2020
Park, S. & Ding, S.-Y. "The N-terminal zinc finger of CELLULOSE SYNTHASE6 is critical in defining its functional properties by determining the level of homodimerization in Arabidopsis." The Plant Journal 103,5, 1826-1838+ (2020). [DOI: 10.1111/tpj.14870]
2020
Peris, D., Alexander, W.G., Fisher, K.J., Moriarty, R.V., Basuino, M.G., Ubbelohde, E.J., Wrobel, R.L. & Hittinger, C.T. "Synthetic hybrids of six yeast species." Nature Communications 11,1, 2085+ (2020). [DOI: 10.1038/s41467-020-15559-4]
2020
Petipas, R.H., Bowsher, A.W., Bekkerring, C., Jack, C.N., McLachlan, E.E., White, R.A., Younginger, B.S., Tiemann, L.K., Evans, S.E. & Friesen, M.L. "Interactive effects of microbes and nitrogen on Panicum virgatum root functional traits and patterns of phenotypic selection." International Journal of Plant Sciences 181,1, 20-32+ (2020). [DOI: 10.1086/706198]
Sustainability