Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2020
Albrecht, M., Kleijn, D., Williams, N.M., Tschumi, M., Blaauw, B.R., Bommarco, R., Campbell, A.J., Dainese, M., Drummond, F.A., Entling, M.H., et al. "The effectiveness of flower strips and hedgerows on pest control, pollination services and crop yield: a quantitative synthesis." Ecology Letters 23,10, 1488-1498+ (2020). [DOI: 10.1111/ele.13576]
Sustainability
2020
Azodi, C.B., Lloyd, J.P. & Shiu, S.-H. "The cis-regulatory codes of response to combined heat and drought stress in Arabidopsis thaliana." NAR Genomics and Bioinformatics 2,3, (2020). [DOI: 10.1093/nargab/lqaa049]
2020
Azodi, C.B., Pardo, J., VanBuren, R., Campos, G. de L. & Shiu, S.-H. "Transcriptome-based prediction of complex traits in maize." The Plant Cell 32, 139-151+ (2020). [DOI: 10.1105/tpc.19.00332]
2020
Azodi, C.B., Tang, J. & Shiu, S.-H. "Opening the black box: interpretable machine learning for geneticists." Trends in Genetics 36,6, 442-455+ (2020). [DOI: 10.1016/j.tig.2020.03.005]
2020
Banerjee, R., Weisenhorn, E., Schwartz, K.J., Myers, K.S., Glasner, J.D., Perna, N.T., Coon, J.J., Welch, R.A. & Kiley, P.J. "Tailoring a global iron regulon to a uropathogen." mBio 11,2, (2020). [DOI: 10.1128/mBio.00351-20]
2020
Banta, A.B., Enright, A.L., Siletti, C. & Peters, J.M. "A high-efficacy CRISPR interference system for gene function discovery in Zymomonas mobilis." Applied and Environmental Microbiology 86,23, (2020). [DOI: 10.1128/AEM.01621-20]
2020
Banta, A.B., Ward, R.D., Tran, J.S., Bacon, E.E. & Peters, J.M. "Programmable gene knockdown in diverse bacteria using mobile-CRISPRi." Current Protocols in Microbiology 59,1, (2020). [DOI: 10.1002/cpmc.130]
2020
Bao, Y., Song, W.-M., Wang, P., Yu, X., Li, B., Jiang, C., Shiu, S.-H., Zhang, H. & Bassham, D.C. "COST1 regulates autophagy to control plant drought tolerance." Proceedings of the National Academy of Sciences of the United States of America 117,13, 7482-7493+ (2020). [DOI: 10.1073/pnas.1918539117]
Sustainability
2020
Benucci, G.M.N., Rennick, B. & Bonito, G. "Patient propagules: Do soil archives preserve the legacy of fungal and prokaryotic communities?" PLOS ONE 15,8, (2020). [DOI: 10.1371/journal.pone.0237368]
Sustainability
2020
Bhandari, D.D. & Brandizzi, F. "Plant endomembranes and cytoskeleton: moving targets in immunity." Current Opinion in Plant Biology 58, 8-16+ (2020). [DOI: 10.1016/j.pbi.2020.09.003]
Feedstocks
2020
Bilyera, N., Kuzyakova, I., Guber, A., Razavi, B.S. & Kuzyakov, Y. "How “hot” are hotspots: statistically localizing the high-activity areas on soil and rhizosphere images." Rhizosphere 16, 100259+ (2020). [DOI: 10.1016/j.rhisph.2020.100259]
2020
Chang, H., Bajaj, I., Huber, G.W., Maravelias, C.T. & Dumesic, J.A. "Catalytic strategy for conversion of fructose to organic dyes, polymers, and liquid fuels." Green Chemistry 22, 5285-5295+ (2020). [DOI: 10.1039/D0GC01576H]
2020
Chang, H., Huber, G.W. & Dumesic, J.A. "Chemical-switching strategy for synthesis and controlled release of norcantharimides from a biomass-derived chemical." ChemSusChem 13,19, 5213-5219+ (2020). [DOI: 10.1002/cssc.202001471]
2020
Chew, A.K., Jiang, S., Zhang, W., Zavala, V.M. & Van Lehn, R.C. "Fast predictions of liquid-phase acid-catalyzed reaction rates using molecular dynamics simulations and convolutional neural networks." Chemical Science 11, 12464-12476+ (2020). [DOI: 10.1039/D0SC03261A]
2020
Chew, A.K., Walker, T.W., Shen, Z., Demir, B., Witteman, L., Euclide, J., Huber, G.W., Dumesic, J.A. & Van Lehn, R.C. "Effect of mixed-solvent environments on the selectivity of acid-catalyzed dehydration reactions." ACS Catalysis 10, 1679-1691+ (2020). [DOI: 10.1021/acscatal.9b03460]
2020
Chundawat, S.P.S., Pal, R.K., Zhao, C., Campbell, T., Teymouri, F., Videto, J., Nielson, C., Wieferich, B., Sousa, L., Dale, B.E., et al. "Ammonia fiber expansion (AFEX) pretreatment of lignocellulosic biomass." Journal of Visualized Experiments 158, (2020). [DOI: 10.3791/57488]
Deconstruction
2020
Dahlin, K.M., Akanga, D., Lombardozzi, D.L., Reed, D.E., Shirkey, G., Lei, C., Abraha, M. & Chen, J. "Challenging a global land surface model in a local socio-environmental system." Land 9, 398+ (2020). [DOI: 10.3390/land9100398]
Sustainability
2020
De Meester, B., Calderón, B.M., de Vries, L., Pollier, J., Goeminne, G., Van Doorsselaere, J., Chen, M., Ralph, J., Vanholme, R. & Boerjan, W. "Tailoring poplar lignin without yield penalty by combining a null and haploinsufficient CINNAMOYL-CoA REDUCTASE2 allele." Nature Communications 11,1, 5020+ (2020). [DOI: 10.1038/s41467-020-18822-w]
2020
del Rio, J.C., Rencoret, J., Gutiérrez, A., Elder, T., Kim, H. & Ralph, J. "Lignin monomers from beyond the canonical monolignol biosynthetic pathway: another brick in the wall." ACS Sustainable Chemistry & Engineering 8,13, 4997-5012+ (2020). [DOI: 10.1021/acssuschemeng.0c01109]
2020
Demir, B., Kropp, T., Rivera-Dones, K.R., Gilcher, E.B., Huber, G.W., Mavrikakis, M. & Dumesic, J.A. "A self-adjusting platinum surface for acetone hydrogenation." Proceedings of the National Academy of Sciences of the United States of America 117,7, 3446-3450+ (2020). [DOI: 10.1073/pnas.1917110117]
2020
Dharampal, P.S., Diaz-Garcia, L., Haase, M.A.B., Zalapa, J., Currie, C.R., Hittinger, C.T. & Steffan, S.A. "Microbial diversity associated with the pollen stores of captive-bred bumble bee colonies." Insects 11,4, 250+ (2020). [DOI: 10.3390/insects11040250]
2020
Dirks, A.C. & Jackson, R.D. "Community structure of arbuscular mycorrhizal fungi in soils of switchgrass harvested for bioenergy." Applied and Environmental Microbiology 86,19, (2020). [DOI: 10.1128/AEM.00880-20]
Sustainability
2020
Doud, D.F.R., Bowers, R.M., Schulz, F., De Raad, M., Deng, K., Tarver, A., Glasgow, E., Meulen, K.V., Fox, B., Deutsch, S., et al. "Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere." The ISME Journal 14, 659-675+ (2020). [DOI: 10.1038/s41396-019-0557-y]
Deconstruction
2020
Elder, T., del Rio, J.C., Ralph, J., Rencoret, J., Kim, H., Beckham, G.T. & Crowley, M.F. "Coupling and reactions of lignols and new lignin monomers: a density functional theory study." ACS Sustainable Chemistry & Engineering 8,30, 11033–11045+ (2020). [DOI: 10.1021/acssuschemeng.0c02880]
2020
Emery, S.M., Stahlheber, K.A. & Gross, K.L. "Drought minimized nitrogen fertilization effects on bioenergy feedstock quality." Biomass and Bioenergy 133, 105452+ (2020). [DOI: 10.1016/j.biombioe.2019.105452]
Sustainability