Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2022
Harrison, M.-C., Labella, A.L., Hittinger, C.T. & Rokas, A. "The evolution of the GALactose utilization pathway in budding yeasts." Trends in Genetics 38,1, 97-106+ (2022). [DOI: 10.1016/j.tig.2021.08.013]
2022
Hoengenaert, L., Wouters, M., Kim, H., De Meester, B., Morreel, K., Vandersyppe, S., Pollier, J., Desmet, S., Goeminne, G., Ralph, J., et al. "Overexpression of the scopoletin biosynthetic pathway enhances lignocellulosic biomass processing." Science Advances 8,28, (2022). [DOI: 10.1126/sciadv.abo5738]
2022
Hu, S., Kamimura, N., Sakamoto, S., Nagano, S., Takata, N., Liu, S., Goeminne, G., Vanholme, R., Uesugi, M., Yamamoto, M., et al. "Rerouting of the lignin biosynthetic pathway by inhibition of cytosolic shikimate recycling in transgenic hybrid aspen." The Plant Journal 110,2, 358-376+ (2022). [DOI: 10.1111/tpj.15674]
2022
Huang, X., Wang, W., Gong, T., Wickell, D., Kuo, L.-Y., Zhang, X., Wen, J., Kim, H., Lu, F., Zhao, H., et al. "The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence." Nature Plants 8,5, 500-512+ (2022). [DOI: 10.1038/s41477-022-01146-6]
2022
Ingle, A.T., Fortney, N.W., Myers, K.S., Walters, K.A., Scarborough, M.J., Donohue, T.J. & Noguera, D.R. "Metagenome-assembled genomes from a microbiome grown in dairy manure hydrolysate." Microbiology Resource Announcements 11,8, (2022). [DOI: 10.1128/mra.00292-22]
2022
Je, L., Huber, G.W., Van Lehn, R.C. & Zavala, V.M. "On the integration of molecular dynamics, data science, and experiments for studying solvent effects on catalysis." Current Opinion in Chemical Engineering 36, 100796+ (2022). [DOI: 10.1016/j.coche.2022.100796]
2022
Khana, D.B., Callaghan, M.M. & Amador-Noguez, D. "Novel computational and experimental approaches for investigating the thermodynamics of metabolic networks." Current Opinion in Microbiology 66, 21-31+ (2022). [DOI: 10.1016/j.mib.2021.11.007]
2022
Khosrozadeh, S., Guber, A., Kravchenko, A., Ghaderi, N. & Blagodatskaya, E. "Soil oxidoreductase zymography: visualizing spatial distributions of peroxidase and phenol oxidase activities at the root-soil interface." Soil Biology and Biochemistry 167, 108610+ (2022). [DOI: 10.1016/j.soilbio.2022.108610]
2022
Kim, K., Gil, J., Ostrom, N.E., Gandhi, H., Oerther, M.S., Kuzyakov, Y., Guber, A.K. & Kravchenko, A.N. "Soil pore architecture and rhizosphere legacy define N2O production in root detritusphere." Soil Biology and Biochemistry 166, 108565+ (2022). [DOI: 10.1016/j.soilbio.2022.108565]
2022
Kim, T.N., Bukhman, Y.V., Jusino, M.A., Scully, E.D., Spiesman, B.J. & Gratton, C. "Using high-throughput amplicon sequencing to determine diet of generalist lady beetles in agricultural landscapes." Biological Control 170, 104920+ (2022). [DOI: 10.1016/j.biocontrol.2022.104920]
 Sustainability
2022
Kittredge, H.A., Dougherty, K.M. & Evans, S.E. "Dead but not forgotten: how extracellular DNA, moisture, and space modulate the horizontal transfer of extracellular antibiotic resistance genes in soil." Environmental Microbiology 88,7, (2022). [DOI: 10.1128/aem.02280-21]
 Sustainability
2022
Ko, D.K. & Brandizzi, F. "Advanced genomics identifies growth effectors for proteotoxic ER stress recovery in Arabidopsis thaliana." Communications Biology 5, 16+ (2022). [DOI: 10.1038/s42003-021-02964-8]
2022
Ko, D.K. & Brandizzi, F. "Transcriptional competition shapes proteotoxic ER stress resolution." Nature Plants 8,5, 481-490+ (2022). [DOI: 10.1038/s41477-022-01150-w]
2022
Krause, D.J. & Hittinger, C.T. "Functional divergence in a multi-gene family is a key evolutionary innovation for anaerobic growth in Saccharomyces cerevisiae." Molecular Biolology and Evolution 39,10, (2022). [DOI: 10.1093/molbev/msac202]
2022
Lakey, B.D., Myers, K.S., Alberge, F., Mettert, E.L., Kiley, P.J., Noguera, D.R. & Donohue, T.J. "The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis." PLOS Genetics 18,6, (2022). [DOI: 10.1371/journal.pgen.1010270]
2022
Lal, P.B., Wells, F. & Kiley, P.J. "Creation of markerless genome modifications in a nonmodel bacterium by fluorescence-aided recombineering." Methods in Molecular Biology 2479, 53-70+ (2022). [DOI: 10.1007/978-1-0716-2233-9_5]
2022
Lamb, A., Weers, B., McKinley, B., Rooney, W., Morgan, C., Marshalll-Colon, A. & Mullet, J. "Bioenergy sorghum’s deep roots: a key to sustainable biomass production on annual cropland." Global Change Biology – Bioenergy 14,2, 132-156+ (2022). [DOI: 10.1111/gcbb.12907]
2022
Lark, T.J., Hendricks, N.P., Smith, A., Pates, N., Spawn-Lee, S.A., Bougie, M., Booth, E.G., Kucharik, C.J. & Gibbs, H.K. "Environmental outcomes of the US Renewable Fuel Standard." Proceedings of the National Academy of Sciences of the United States of America 119,9, (2022). [DOI: 10.1073/pnas.2101084119]
 Sustainability
2022
Li, J., Maravelias, C.T. & Van Lehn, R.C. "Adaptive conformer sampling for property prediction using the conductor-like screening model for real solvents." Industrial & Engineering Chemistry Research 61,25, 9025-9036+ (2022). [DOI: 10.1021/acs.iecr.2c01163]
2022
Li, X., Sarma, S.J., Sumner, L.W., Jones, D. & Last, R.L. "Switchgrass metabolomics reveals striking genotypic and developmental differences in specialized metabolic phenotypes." Journal of Agricultural and Food Chemistry 70,26, 8010-8023+ (2022). [DOI: 10.1021/acs.jafc.2c01306]
 Sustainability
2022
Linz, A.M., Ma, Y., Scholz, S., Noguera, D.R. & Donohue, T.J. "iNovo479: metabolic modeling provides a roadmap to optimize bioproduct yield from deconstructed lignin aromatics by Novosphingobium aromaticivorans." Metabolites 12,4, 366+ (2022). [DOI: 10.3390/metabo12040366]
2022
Liu, Y., Evans, S.E., Friesen, M.L. & Tiemann, L.K. "Root exudates shift how N mineralization and N fixation contribute to the plant-available N supply in low fertility soils." Soil Biology and Biochemistry 165, 108541+ (2022). [DOI: 10.1016/j.soilbio.2021.108541]
 Sustainability
2022
Mahon, E.L., de Vries, L., Jang, S.-K., Middar, S., Kim, H., Unda, F., Ralph, J. & Mansfield, S.D. "Exogenous chalcone synthase expression in developing poplar xylem incorporates naringenin into lignins." Plant Physiology 188, 984-996+ (2022). [DOI: 10.1093/plphys/kiab499]
2022
Malmstrom, C.M., Busch, A.K., Cole, E.A., Trebicki, P., Berndardo, P., Brown, A.K., Landis, D.A. & Werling, B.P. "Emerging wild virus of native grass bioenergy feedstock is well established in the Midwestern USA and associated with premature stand senescence." Global Change Biology – Bioenergy 14,4, 463-480+ (2022). [DOI: 10.1111/gcbb.12927]
 Sustainability
2022
Martin, T. & Sprunger, C. D. "Sensitive measures of soil health reveal carbon stability across a management intensity and plant biodiversity gradient." Frontiers in Soil Science 2, 917885+ (2022). [DOI: 10.3389/fsoil.2022.917885]
 Sustainability