Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2021	Guber, A., Kutlu, T., Rivers, M. & Kravchenko, A. "Mass-balance approach to quantify water distribution in soils based on X-ray computed tomography images." European Journal of Soil Science 72,2, 578-592+ (2021). [DOI: 10.1111/ejss.13005] DOI Google Scholar	Sustainability
2021	Haan, N.L., Iuliano, B.G., Gratton, C. & Landis, D.A. "Designing agricultural landscapes for arthropod-based ecosystem services in North America." in Advances in Ecological Research. vol. 64 191-250+ (Academic Press, 2021). [DOI: 10.1016/bs.aecr.2021.01.003] DOI Google Scholar	Sustainability
2021	Haase, M.A.B., Kominek, J., Opulente, D.A., Shen, X.-X., Labella, A.L., Zhou, X., DeVirgilio, J., Hulfachor, A.B., Kurtzman, C.P., Rokas, A., et al. "Repeated horizontal gene transfer of GALactose metabolism genes violates Dollo’s law of irreversible loss." Genetics 217,2, (2021). [DOI: 10.1093/genetics/iyaa012] DOI Google Scholar
2021	Helms, J.A., Roeder, K.A., Ijelu, S.E., Ratcliff, I. & Haddad, N.M. "Bioenergy landscapes drive trophic shifts in generalist ants." Journal of Animal Ecology 90,3, 738-750+ (2021). [DOI: 10.1111/1365-2656.13407] DOI Google Scholar	Sustainability
2021	Ikeda, T., Takata, N., Sakamoto, S., Hu, S., Hishiyama, S., Mitsuda, N., Boerjan, W., Ralph, J. & Kajita, S. "Improved chemical pulping and saccharification of a natural mulberry mutant deficient in cinnamyl alcohol dehydrogenase." Holzforschung DOI: 10.1515/hf-2021-0015, (2021). [DOI: 10.1515/hf-2021-0015] DOI Google Scholar
2021	Im, J.H., Ko, J.-H., Kim, W.-C., Crain, B., Keathley, D. & Han, K.-H. "Mitogen-activated protein kinase 6 negatively regulates secondary wall biosynthesis by modulating MYB46 protein stability in Arabidopsis thaliana." PLOS Genetics 17,4, (2021). [DOI: 10.1371/journal.pgen.1009510] DOI Google Scholar
2021	Kasanke, C.P., Zhao, Q., Bell, S., Thompson, A.M. & Hofmockel, K.S. "Can switchgrass increase carbon accrual in marginal soils? The importance of site selection." Global Change Biology – Bioenergy 13,2, 320-335+ (2021). [DOI: 10.1111/gcbb.12777] DOI Google Scholar	Sustainability
2021	Kemmerling, L.R., Griffin, S.R. & Haddad, N.M. "Optimizing pollinator conservation and crop yield among perennial bioenergy crops." Global Change Biology – Bioenergy DOI: 10.1111/gcbb.12826, (2021). [DOI: 10.1111/gcbb.12826] DOI Google Scholar
2021	Kim, K., Kutlu, T., Kravchenko, A. & Guber, A. "Dynamics of N2O in vicinity of plant residues: a microsensor approach." Plant and Soil 462, 331-347+ (2021). [DOI: 10.1007/s11104-021-04871-7] DOI Google Scholar
2021	Ko, D.K. & Brandizzi, F. "A temporal hierarchy underpins the transcription factor-DNA interactome of the maize UPR." The Plant Journal 105,1, 254-270+ (2021). [DOI: 10.1111/tpj.15044] DOI Google Scholar
2021	Kravchenko, A., Guber, A., Gunina, A., Dippold, M. & Kuzyakov, Y. "Pore-scale view of microbial turnover: combining 14C imaging, µCT, and zymography after adding soluble carbon to soil pores of specific sizes." European Journal of Soil Science 72,2, 593-607+ (2021). [DOI: 10.1111/ejss.13001] DOI Google Scholar	Sustainability
2021	Kravchenko, A.N., Zheng, H., Kuzyakov, Y., Robertson, G.P. & Guber, A.K. "Belowground interplant carbon transfer promotes soil carbon gains in diverse plant communities." Soil Biology and Biochemistry 159, 108297+ (2021). [DOI: 10.1016/j.soilbio.2021.108297] DOI Google Scholar
2021	LaBella, A.L., Opulente, D.A., Steenwyk, J.L., Hittinger, C.T. & Rokas, A. "Signatures of optimal codon usage in metabolic genes inform budding yeast ecology." PLOS Biology 19,4, (2021). [DOI: 10.1371/journal.pbio.3001185] DOI Google Scholar
2021	Lark, T.J., Schelly, I.H. & Gibbs, H.K. "Accuracy, bias, and improvements in mapping crops and cropland across the United States using the USDA cropland data layer." Remote Sensing 13,5, 968+ (2021). [DOI: 10.3390/rs13050968] DOI Google Scholar	Sustainability
2021	Lei, C., Abraha, M., Chen, J. & Su, Y.-J. "Long-term variability of root production in bioenergy crops from ingrowth core measurements." Journal of Plant Ecology 14,5, 757-770+ (2021). [DOI: 10.1093/jpe/rtab018] DOI Google Scholar	Sustainability
2021	Li, H., Young, S.E., Poulsen, M. & Currie, C.R. "Symbiont-mediated digestion of plant biomass in fungus-farming insects." Annual Review of Entomology 66, 297-316+ (2021). [DOI: 10.1146/annurev-ento-040920-061140] DOI Google Scholar
2021	Li, Y., Steenwyk, J.L., Chang, Y., Wang, Y., James, T.Y., Stajich, J.E., Spatafora, J.W., Groenewald, M., Dunn, C.W., Hittinger, C.T., et al. "A genome-scale phylogeny of the kingdom Fungi." Current Biology 31,8, 1653-1665+ (2021). [DOI: 10.1016/j.cub.2021.01.074] DOI Google Scholar
2021	Liu, X., Van Acker, R., Voorend, W., Pallidis, A., Goeminne, G., Pollier, J., Morreel, K., Kim, H., Muylle, H., Bosio, M., et al. "Rewired phenolic metabolism and improved saccharification efficiency of a Zea mays cinnamyl alcohol dehydrogenase 2 (zmcad2) mutant." The Plant Journal 105,5, 1240-1257+ (2021). [DOI: 10.1111/tpj.15108] DOI Google Scholar
2021	Lovell, J.T., MacQueen, A.H., Mamidi, S., Bonnette, J., Jenkins, J., Napier, J.D., Sreedasyam, A., Healey, A., Session, A., Shu, S., et al. "Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass." Nature 590, 438–444+ (2021). [DOI: 10.1038/s41586-020-03127-1] DOI Google Scholar	Feedstocks, Sustainability
2021	Lu, F., Wang, C., Chen, M. & Ralph, J. "A facile spectroscopic method for measuring lignin content in lignocellulosic biomass." Green Chemistry DOI: 10.1039/D1GC01507A, (2021). [DOI: 10.1039/D1GC01507A] DOI Google Scholar
2021	Ma, Y., Donohue, T.J. & Noguera, D.R. "Kinetic modeling of anaerobic degradation of plant-derived aromatic mixtures by Rhodopseudomonas palustris." Biodegradation 32,2, (2021). [DOI: 10.1007/s10532-021-09932-3] DOI Google Scholar
2021	Maestrini, B. & Basso, B. "Subfield crop yields and temporal stability in thousands of US Midwest fields." Precision Agriculture DOI: 10.1007/s11119-021-09810-1, (2021). [DOI: 10.1007/s11119-021-09810-1] DOI Google Scholar	Sustainability
2021	Murphy, E.K., Mottiar, Y., Soolanayakanahally, R.Y. & Mansfield, S.D. "Variations in cell wall traits impact saccharification potential of Salix famelica and Salix eriocephala." Biomass & Bioenergy 148, 106051+ (2021). [DOI: 10.1016/j.biombioe.2021.106051] DOI Google Scholar	Feedstocks
2021	Myers, K.S., Place, M., Kominek, J., Noguera, D.R. & Donohue, T.J. "Delila-PY, a pipeline for utilizing the Delila suite of software to identify potential DNA binding motifs." Microbiology Resource Announcements 10,15, (2021). [DOI: 10.1128/MRA.00160-21] DOI Google Scholar
2021	Nayfach, S., Roux, S., Seshadri, R., Udwary, D., Varghese, N., Schulz, F., Wu, D., Paez-Espino, D., Chen, I.-M., Huntemann, M., et al. "A genomic catalog of Earth's microbiomes." Nature Biotechnology 39,4, 499-509+ (2021). [DOI: 10.1038/s41587-020-0718-6] DOI Google Scholar

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