Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2022
Malmstrom, C.M., Busch, A.K., Cole, E.A., Trebicki, P., Berndardo, P., Brown, A.K., Landis, D.A. & Werling, B.P. "Emerging wild virus of native grass bioenergy feedstock is well established in the Midwestern USA and associated with premature stand senescence." Global Change Biology – Bioenergy 14,4, 463-480+ (2022). [DOI: 10.1111/gcbb.12927]
Sustainability
2022
Martinez-Feria, R., Basso, B. & Kim, S. "Boosting climate change mitigation potential of perennial lignocellulosic crops grown on marginal lands." Environmental Research Letters 17, 044004+ (2022). [DOI: 10.1088/1748-9326/ac541b]
Sustainability
2022
Moore, B.M., Lee, Y.S., Wang, P., Azodi, C., Grotewold, E. & Shiu, S.-H. "Modeling temporal and hormonal regulation of plant transcriptional response to wounding." The Plant Cell 34,2, 867-888+ (2022). [DOI: 10.1093/plcell/koab287]
2022
Mozzachiodi, S., Bai, F.-Y., Baldrian, P., Bell, G., Boundy-Mills, K., Buzzini, P., Cadez, N., Cubillos, F.A., Dashko, S., Dimitrov, R., et al. "Yeasts from temperate forests." Yeast 39,1-2, 4-24+ (2022). [DOI: 10.1002/yea.3699]
2022
Myers, K.S., Lal, P.B., Noguera, D.R. & Donohue, T.J. "Using genome scale mutant libraries to identify essential genes." in Methods in Molecular Biology. vol. 2377 215-236+ (Humana, 2022). [DOI: 10.1007/978-1-0716-1720-5_12]
2022
O'Neill, E.G., Martinez-Feria, R.A., Basso, B. & Maravelias, C.T. "Integrated spatially explicit landscape and cellulosic biofuel supply chain optimization under biomass yield uncertainty." Computers & Chemical Engineering 160, 107724+ (2022). [DOI: 10.1016/j.compchemeng.2022.107724]
Sustainability
2022
Ohnuki, S., Ogawa, I., Itto-Nakama, K., Lu, F., Ranjan, A., Kabbage, M., Gebre, A.A., Yamashita, M., Li, S.C., Yashiroda, Y., et al. "High-throughput platform for yeast morphological profiling predicts the targets of bioactive compounds." npj Systems Biology Applications 8,1, 3+ (2022). [DOI: 10.1038/s41540-022-00212-1]
2022
Padmakshan, D., Timokhin, V.I., Lu, F., Schatz, P.F., Vanholme, R., Boerjan, W. & Ralph, J. "Synthesis of hydroxycinnamoyl shikimates and their role in monolignol biosynthesis." Holzforschung 76,2, 133-144+ (2022). [DOI: 10.1515/hf-2021-0149]
2022
Pan, D., Gelfand, I., Tao, L., Abraha, M., Sun, K., Guo, X., Chen, J., Robertson, P. & Zondlo, M.A. "A new open-path eddy covariance method for nitrous oxide and other trace gases that minimizes temperature corrections." Global Change Biology 28,4, 1446-1457+ (2022). [DOI: 10.1111/gcb.15986]
2022
Perez, J.M., Sener, C., Misra, S., Umana, G.E., Coplien, J., Haak, D., Li, Y., Maravelias, C.T., Karlen, S.D., Ralph, J., et al. "Integrating lignin depolymerization with microbial funneling processes using agronomically relevant feedstocks." Green Chemistry DOI: 10.1039/D1GC03592D, (2022). [DOI: 10.1039/D1GC03592D]
2022
Rencoret, J., Rosado, M.J., Kim, H., Timokhin, V.I., Gutiérrez, A., Bausch, F., Rosenau, T., Potthast, A., Ralph, J. & del Río, J.C. "Flavonoids naringenin chalcone, naringenin, dihydrotricin, and tricin are lignin monomers in papyrus." Plant Physiology 188,1, 208-219+ (2022). [DOI: 10.1093/plphys/kiab469]
2022
Scarborough, M.J., Myers, K.S., Fortney, N.W., Ingle, A.T., Donohue, T.J. & Noguera, D.R. "Metagenome-assembled genomes from a microbiome converting xylose to medium-chain carboxylic acids." Microbiology Resource Announcements DOI: 10.1128/mra.01151-21, (2022). [DOI: 10.1128/mra.01151-21]
2022
Sciusco, P., Chen, J., Giannico, V., Abraha, M., Lei, C., Shirkey, G., Yuan, J. & Robertson, P. "Albedo-induced global warming impact at multiple temporal scales within an Upper Midwest USA watershed." Land 11,2, 283+ (2022). [DOI: 10.3390/land11020283]
Sustainability
2022
Shuai, G. & Basso, B. "Subfield maize yield prediction improves when in-season crop water deficit is included in remote sensing imagery-based models." Remote Sensing of Environment 272, 112938+ (2022). [DOI: 10.1016/j.rse.2022.112938]
Sustainability
2022
Smith, R.A., Beebe, E.T., Bingman, C.A., Meulen, K.V., Eugene, A., Steiner, A.J., Karlen, S.D., Ralph, J. & Fox, B.G. "Identification and characterization of a set of monocot BAHD monolignol transferases." Plant Physiology DOI: 10.1093/plphys/kiac035, (2022). [DOI: 10.1093/plphys/kiac035]
2022
Smith, R.A., Lu, F., Muro-Villanueva, F., Cusumano, J.C., Chapple, C. & Ralph, J. "Manipulation of lignin monomer composition combined with the introduction of monolignol conjugate biosynthesis leads to synergistic changes in lignin structure." Plant and Cell Physiology DOI: 10.1093/pcp/pcac031, (2022). [DOI: 10.1093/pcp/pcac031]
2022
Spurley, W.J., Fisher, K.J., Langdon, Q.K., Buh, K.V., Jarzyna, M., Haase, M.A.B., Sylvester, K., Moriarty, R.V., Rodriguez, D., Sheddan, A., et al. "Substrate, temperature, and geographical patterns among nearly 2000 natural yeast isolates." Yeast 39,1-2, 55-68+ (2022). [DOI: 10.1002/yea.3679]
2022
Taifan, G.S.P. & Maravelias, C.T. "Generalized optimization-based synthesis of membrane systems for multicomponent gas mixture separation." Chemical Engineering Science 252, 117482+ (2022). [DOI: 10.1016/j.ces.2022.117482]
Sustainability
2022
Tilhou, N.W. & Casler, M.D. "Surveying grassland islands: the genetics and performance of Appalachian switchgrass (Panicum virgatum L.) collections." Genetic Resources and Crop Evolution 69,3, 1039–1055+ (2022). [DOI: 10.1007/s10722-021-01282-6]
2022
Trujillo, E.A., Hebert, A.S., Vazquez, J.C.R., Brademan, D.R., Tatli, M., Amador-Noguez, D., Meyer, J.G. & Coon, J.J. "Rapid targeted quantitation of protein overexpression with direct infusion shotgun proteome analysis (DISPA-PRM)." Analytical Chemistry 94,4, 1965-1973+ (2022). [DOI: 10.1021/acs.analchem.1c03243]
2022
VanWallendael, A., Lowry, D.B. & Hamilton, J.A. "One hundred years into the study of ecotypes, new advances are being made through large-scale field experiments in perennial plant systems." Current Opinion in Plant Biology 66, 102152+ (2022). [DOI: 10.1016/j.pbi.2021.102152]
Sustainability
2022
Wang, P., Schumacher, A.M. & Shiu, S.-H. "Computational prediction of plant metabolic pathways." Current Opinion in Plant Biology 66, 102171+ (2022). [DOI: 10.1016/j.pbi.2021.102171]
Sustainability
2022
York, L.M., Cumming, J.R., Trusiak, A., Bonito, G., von Haden, A.C., Kalluri, U.C., Tiemann, L.K., Andeer, P.F., Blanc-Betes, E., Diab, J.H., et al. "Bioenergy underground: challenges and opportunities forphenotyping roots and the microbiome for sustainable bioenergycrop production." The Plant Phenome Journal 5,1, (2022). [DOI: 10.1002/ppj2.20028]
2022
Zahorec, A., Reid, M.L., Tiemann, L.K. & Landis, D.A. "Perennial grass bioenergy cropping systems: impacts on soil fauna and implications for soil carbon accrual." Global Change Biology – Bioenergy 14,1, 4-23+ (2022). [DOI: 10.1111/gcbb.12903]
2022
Zhang, B., Munske, G.R., Timokhin, V.I., Ralph, J., Davydov, D.R., Vermerris, W., Sattler, S.E. & Kang, C.H. "Functional and structural insight into the flexibility of cytochrome P450 reductases from Sorghum bicolor and its implications for lignin composition." Journal of Biological Chemistry 298,4, 101761+ (2022). [DOI: 10.1016/j.jbc.2022.101761]