Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2021
Guber, A., Kutlu, T., Rivers, M. & Kravchenko, A. "Mass-balance approach to quantify water distribution in soils based on X-ray computed tomography images." European Journal of Soil Science 72,2, 578-592+ (2021). [DOI: 10.1111/ejss.13005]
Sustainability
2021
Haan, N.L., Iuliano, B.G., Gratton, C. & Landis, D.A. "Designing agricultural landscapes for arthropod-based ecosystem services in North America." in Advances in Ecological Research. vol. 64 191-250+ (Academic Press, 2021). [DOI: 10.1016/bs.aecr.2021.01.003]
Sustainability
2021
Haase, M.A.B., Kominek, J., Opulente, D.A., Shen, X.-X., Labella, A.L., Zhou, X., DeVirgilio, J., Hulfachor, A.B., Kurtzman, C.P., Rokas, A., et al. "Repeated horizontal gene transfer of GALactose metabolism genes violates Dollo’s law of irreversible loss." Genetics 217,2, (2021). [DOI: 10.1093/genetics/iyaa012]
2021
Helms, J.A., Roeder, K.A., Ijelu, S.E., Ratcliff, I. & Haddad, N.M. "Bioenergy landscapes drive trophic shifts in generalist ants." Journal of Animal Ecology 90,3, 738-750+ (2021). [DOI: 10.1111/1365-2656.13407]
Sustainability
2021
Ikeda, T., Takata, N., Sakamoto, S., Hu, S., Hishiyama, S., Mitsuda, N., Boerjan, W., Ralph, J. & Kajita, S. "Improved chemical pulping and saccharification of a natural mulberry mutant deficient in cinnamyl alcohol dehydrogenase." Holzforschung DOI: 10.1515/hf-2021-0015, (2021). [DOI: 10.1515/hf-2021-0015]
2021
Im, J.H., Ko, J.-H., Kim, W.-C., Crain, B., Keathley, D. & Han, K.-H. "Mitogen-activated protein kinase 6 negatively regulates secondary wall biosynthesis by modulating MYB46 protein stability in Arabidopsis thaliana." PLOS Genetics 17,4, (2021). [DOI: 10.1371/journal.pgen.1009510]
2021
Kasanke, C.P., Zhao, Q., Bell, S., Thompson, A.M. & Hofmockel, K.S. "Can switchgrass increase carbon accrual in marginal soils? The importance of site selection." Global Change Biology – Bioenergy 13,2, 320-335+ (2021). [DOI: 10.1111/gcbb.12777]
Sustainability
2021
Kemmerling, L.R., Griffin, S.R. & Haddad, N.M. "Optimizing pollinator conservation and crop yield among perennial bioenergy crops." Global Change Biology – Bioenergy DOI: 10.1111/gcbb.12826, (2021). [DOI: 10.1111/gcbb.12826]
2021
Kim, K., Kutlu, T., Kravchenko, A. & Guber, A. "Dynamics of N2O in vicinity of plant residues: a microsensor approach." Plant and Soil 462, 331-347+ (2021). [DOI: 10.1007/s11104-021-04871-7]
2021
Ko, D.K. & Brandizzi, F. "A temporal hierarchy underpins the transcription factor-DNA interactome of the maize UPR." The Plant Journal 105,1, 254-270+ (2021). [DOI: 10.1111/tpj.15044]
2021
Kravchenko, A., Guber, A., Gunina, A., Dippold, M. & Kuzyakov, Y. "Pore-scale view of microbial turnover: combining 14C imaging, µCT, and zymography after adding soluble carbon to soil pores of specific sizes." European Journal of Soil Science 72,2, 593-607+ (2021). [DOI: 10.1111/ejss.13001]
Sustainability
2021
Kravchenko, A.N., Zheng, H., Kuzyakov, Y., Robertson, G.P. & Guber, A.K. "Belowground interplant carbon transfer promotes soil carbon gains in diverse plant communities." Soil Biology and Biochemistry 159, 108297+ (2021). [DOI: 10.1016/j.soilbio.2021.108297]
2021
LaBella, A.L., Opulente, D.A., Steenwyk, J.L., Hittinger, C.T. & Rokas, A. "Signatures of optimal codon usage in metabolic genes inform budding yeast ecology." PLOS Biology 19,4, (2021). [DOI: 10.1371/journal.pbio.3001185]
2021
Lark, T.J., Schelly, I.H. & Gibbs, H.K. "Accuracy, bias, and improvements in mapping crops and cropland across the United States using the USDA cropland data layer." Remote Sensing 13,5, 968+ (2021). [DOI: 10.3390/rs13050968]
Sustainability
2021
Lei, C., Abraha, M., Chen, J. & Su, Y.-J. "Long-term variability of root production in bioenergy crops from ingrowth core measurements." Journal of Plant Ecology 14,5, 757-770+ (2021). [DOI: 10.1093/jpe/rtab018]
Sustainability
2021
Li, H., Young, S.E., Poulsen, M. & Currie, C.R. "Symbiont-mediated digestion of plant biomass in fungus-farming insects." Annual Review of Entomology 66, 297-316+ (2021). [DOI: 10.1146/annurev-ento-040920-061140]
2021
Li, Y., Steenwyk, J.L., Chang, Y., Wang, Y., James, T.Y., Stajich, J.E., Spatafora, J.W., Groenewald, M., Dunn, C.W., Hittinger, C.T., et al. "A genome-scale phylogeny of the kingdom Fungi." Current Biology 31,8, 1653-1665+ (2021). [DOI: 10.1016/j.cub.2021.01.074]
2021
Liu, X., Van Acker, R., Voorend, W., Pallidis, A., Goeminne, G., Pollier, J., Morreel, K., Kim, H., Muylle, H., Bosio, M., et al. "Rewired phenolic metabolism and improved saccharification efficiency of a Zea mays cinnamyl alcohol dehydrogenase 2 (zmcad2) mutant." The Plant Journal 105,5, 1240-1257+ (2021). [DOI: 10.1111/tpj.15108]
2021
Lovell, J.T., MacQueen, A.H., Mamidi, S., Bonnette, J., Jenkins, J., Napier, J.D., Sreedasyam, A., Healey, A., Session, A., Shu, S., et al. "Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass." Nature 590, 438–444+ (2021). [DOI: 10.1038/s41586-020-03127-1]
Feedstocks, Sustainability
2021
Lu, F., Wang, C., Chen, M. & Ralph, J. "A facile spectroscopic method for measuring lignin content in lignocellulosic biomass." Green Chemistry DOI: 10.1039/D1GC01507A, (2021). [DOI: 10.1039/D1GC01507A]
2021
Ma, Y., Donohue, T.J. & Noguera, D.R. "Kinetic modeling of anaerobic degradation of plant-derived aromatic mixtures by Rhodopseudomonas palustris." Biodegradation 32,2, (2021). [DOI: 10.1007/s10532-021-09932-3]
2021
Maestrini, B. & Basso, B. "Subfield crop yields and temporal stability in thousands of US Midwest fields." Precision Agriculture DOI: 10.1007/s11119-021-09810-1, (2021). [DOI: 10.1007/s11119-021-09810-1]
Sustainability
2021
Murphy, E.K., Mottiar, Y., Soolanayakanahally, R.Y. & Mansfield, S.D. "Variations in cell wall traits impact saccharification potential of Salix famelica and Salix eriocephala." Biomass & Bioenergy 148, 106051+ (2021). [DOI: 10.1016/j.biombioe.2021.106051]
Feedstocks
2021
Myers, K.S., Place, M., Kominek, J., Noguera, D.R. & Donohue, T.J. "Delila-PY, a pipeline for utilizing the Delila suite of software to identify potential DNA binding motifs." Microbiology Resource Announcements 10,15, (2021). [DOI: 10.1128/MRA.00160-21]
2021
Nayfach, S., Roux, S., Seshadri, R., Udwary, D., Varghese, N., Schulz, F., Wu, D., Paez-Espino, D., Chen, I.-M., Huntemann, M., et al. "A genomic catalog of Earth's microbiomes." Nature Biotechnology 39,4, 499-509+ (2021). [DOI: 10.1038/s41587-020-0718-6]