Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2023	Robertson, P. "Denitrification and the challenge of scaling microsite knowledge to the globe." mLife 2,3, 229-238+ (2023). [DOI: 10.1002/mlf2.12080] DOI Google Scholar
2023	Robinson, D.E., Vanacloig-Pedros, E., Cai, R., Place, M., Hose, J. & Gasch, A.P. "Gene-by-environment interactions influence the fitness cost of gene copy-number variation in yeast." G3: Genes \| Genomes \| Genetics 13,10, (2023). [DOI: 10.1093/g3journal/jkad159] DOI Google Scholar
2023	Santos, A.R.O., Barros, K.O., Batista, T.M., Souza, G.F.L., Alvarenga, F.B.M., Abegg, M.A., Sato, T.K., Hittinger, C.T., Lachance, M.-A. & Rosa, C.A. "Saccharomycopsis praedatoria sp. nov., a predacious yeast isolated from soil and rotten wood in an Amazonian rainforest biome." International Journal of Systematic and Evolutionary Microbiology 73,10, 006125+ (2023). [DOI: 10.1099/ijsem.0.006125] DOI Google Scholar
2023	Schmitz, J.M., Wolters, J.F., Murray, N.H., Guerra, R.M., Bingman, C.A., Hittinger, C.T. & Pagliarini, D.J. "Aim18p and Aim46p are chalcone isomerase (CHI)-domain-containing mitochondrial hemoproteins in Saccharomyces cerevisiae." Journal of Biological Chemistry 299,3, 102981+ (2023). [DOI: 10.1016/j.jbc.2023.102981] DOI Google Scholar
2023	Shade, A. "Microbiome rescue: directing resilience of environmental microbial communities." Current Opinion in Microbiology 72, 102263+ (2023). [DOI: 10.1016/j.mib.2022.102263] DOI Google Scholar
2023	Shafiei, R., Hooper, M., McClellan, C., Oakey, H., Stephens, J., Lapierre, C., Tsuji, Y., Goeminne, G., Vanholme, R., Boerjan, W., et al. "Downregulation of barley ferulate 5-hydroxylase dramatically alters straw lignin structure without impact on mechanical properties." Frontiers in Plant Science 13, 1125003+ (2023). [DOI: 10.3389/fpls.2022.1125003] DOI Google Scholar
2023	Son, S., Im, J.H., Ko, J.-H. & Han, K.-H. "SNF1-related protein kinase 1 represses Arabidopsis growth through post-translational modification of E2Fa in response to energy stress." New Phytologist 237,3, 823-839+ (2023). [DOI: 10.1111/nph.18597] DOI Google Scholar
2023	Sourice, M., Askenasy, I., Garcia, P.S., Denis, Y., Brasseur, G., Kiley, P.J., Py, B. & Aubert, C. "A diverged transcriptional network for usage of two Fe-S cluster biogenesis machineries in the delta-proteobacterium Myxococcus xanthus." mBio 14,1, (2023). [DOI: 10.1128/mbio.03001-22] DOI Google Scholar
2023	Sreedasyam, A., Plott, C., Hossain, M.S., Lovell, J.T., Grimwood, J., Jenkins, J.W., Daum, C., Barry, K., Carlson, J., Shu, S., et al. "JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom." Nucleic Acids Research 51,16, 8383–840+ (2023). [DOI: 10.1093/nar/gkad616] DOI Google Scholar
2023	Sumer, Z. & Van Lehn, R.C. "Heuristic computational model for predicting lignin solubility in tailored organic solvents." ACS Sustainable Chemistry & Engineering 11,1, 187-198+ (2023). [DOI: 10.1021/acssuschemeng.2c05199] DOI Google Scholar
2023	Taifan, G.S.P. & Maravelias, C.T. "Integrated membrane material design and system synthesis." Chemical Engineering Science 269, 118406+ (2023). [DOI: 10.1016/j.ces.2022.118406] DOI Google Scholar
2023	Taifan, G.S.P. & Maravelias, C.T. "Optimization-based azeotropic distillation system synthesis using geometric insights." Industrial & Engineering Chemistry Research 62,31, 12220-122234+ (2023). [DOI: 10.1021/acs.iecr.3c01269] DOI Google Scholar
2023	Takasuka, T., Kim, H., Deng, K., Bianchetti, C.M., Yamashita, K., Beebe, E.T., Bergeman, L.F., Meulen, K.A.V., Deutsch, S., Ralph, J., et al. "Quantitative analysis of the high yield hydrolysis of kelp by laminarinase and alginate lyase." ChemBioChem 24,20, (2023). [DOI: 10.1002/cbic.202300357] DOI Google Scholar
2023	Tejera-Nieves, M., Abraha, M., Chen, J., Hamilton, S.K., Robertson, P. & Walker, B.J. "Seasonal decline in leaf photosynthesis in perennial switchgrass explained by sink limitations and water deficit." Frontiers in Plant Science 13, 1023571+ (2023). [DOI: 10.3389/fpls.2022.1023571] DOI Google Scholar
2023	Tejera-Nieves, M. & Walker, B.J. "A 30% reduction in switchgrass rhizome reserves did not decrease biomass yield." Global Change Biology – Bioenergy 15,11, 1329-1338+ (2023). [DOI: 10.1111/gcbb.13094] DOI Google Scholar
2023	Venkataraman, M., Yñigez-Gutierrez, A., Infante, V., MacIntyre, A., Fernandes-Júnior, P.I., Ané, J.-M. & Pfleger, B. "Synthetic biology toolbox for nitrogen-fixing soil microbes." ACS Synthetic Biology 12,12, 3623–3634+ (2023). [DOI: 10.1021/acssynbio.3c00414] DOI Google Scholar
2023	Wagner, E.R. & Gasch, A.P. "Advances in S. cerevisiae engineering for xylose fermentation and biofuel production: balancing growth, metabolism, and defense." Journal of Fungi 9,8, 786+ (2023). [DOI: 10.3390/jof9080786] DOI Google Scholar
2023	Wagner, E.R., Nightingale, N.M., Jen, A., Overmyer, K.A., McGee, M., Coon, J.J. & Gasch, A.P. "PKA regulatory subunit Bcy1 couples growth, lipid metabolism, and fermentation during anaerobic xylose growth in Saccharomyces cerevisiae." PLOS Genetics 19,7, (2023). [DOI: 10.1371/journal.pgen.1010593] DOI Google Scholar
2023	Walters, K.A., Mohan, G., Myers, K.S., Ingle, A.T., Donohue, T.J. & Noguera, D.R. "A metagenome-level analysis of a microbial community fermenting ultra-filtered milk permeate." Frontiers in Bioengineering and Biotechnology 11, 1173656+ (2023). [DOI: 10.3389/fbioe.2023.1173656] DOI Google Scholar
2023	Wang, Y., Chen, M., Yang, Y., Ralph, J. & Pan, X. "Efficient O-demethylation of lignin-derived aromatic compounds under moderate conditions." RSC Advances 13,9, 5925-5932+ (2023). [DOI: 10.1039/d3ra00245d] DOI Google Scholar
2023	Witvrouw, K., Kim, H., Vanholme, R., Goeminne, G., Ralph, J., Boerjan, W. & Vanholme, B. "Reassessing the claimed cytokinin-substituting activity of dehydrodiconiferyl alcohol glucoside." Proceedings of the National Academy of Sciences of the United States of America 120,9, (2023). [DOI: 10.1073/pnas.2123301120] DOI Google Scholar
2023	Wolters, J.F., Labella, A.L., Opulente, D.A., Rokas, A. & Hittinger, C.T. "Mitochondrial genome diversity across the subphylum Saccharomycotina." Frontiers in Microbiology 14, 1268944+ (2023). [DOI: 10.3389/fmicb.2023.1268944] DOI Google Scholar
2023	Yang, J.E., Larson, M.R., Sibert, B.S., Kim, J.Y., Parrell, D., Sanchez, J.C., Pappas, V., Kumar, A., Cai, K., Thompson, K., et al. "Correlative montage parallel array cryo-tomography for in situ structural cell biology." Nature Methods 20,10, 1537-1543+ (2023). [DOI: 10.1038/s41592-023-01999-5] DOI Google Scholar
2022	Alred, B., Haan, N., Landis, D.A. & Szűcs, M. "Does the presence of the biological control agent, Hypena opulenta (Lepidoptera: Erebidae) on swallow-worts deter monarch oviposition?" Environmental Entomology 51,1, 77-82+ (2022). [DOI: 10.1093/ee/nvab121] DOI Google Scholar
2022	Beach, N.K., Myers, K.S., Donohue, T.J. & Noguera, D.R. "Metagenomes from 25 low-abundance microbes in a partial nitritation anammox microbiome." Microbiology Resource Announcements 11,6, (2022). [DOI: 10.1128/mra.00212-22] DOI Google Scholar