Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2014	Book, A.J., Lewin, G.R., McDonald, B.R., Takasuka, T.E., Doering, D.T., Adams, A.S., Blodgett, J.A.V., Clardy, J., Raffa, K.F., Fox, B.G., et al. "Cellulolytic Streptomyces strains associated with herbivorous insects share a phylogenetically linked capacity for the degradation of lignocellulose." Applied and Environmental Microbiology 80,15, 4692-4701+ (2014). [DOI: 10.1128/AEM.01133-14] DOI Google Scholar	Deconstruction
2014	Book, A.J., Yennamalli, R.M., Takasuka, T.E., Currie, C.R., Phillips, G.N. & Fox, B.G. "Evolution of substrate specificity in bacterial AA10 lytic polysaccharide monooxygenases." Biotechnology for Biofuels 7,1, 109+ (2014). [DOI: 10.1186/1754-6834-7-109] DOI Google Scholar	Deconstruction
2014	Calvey, C.H., Willis, L.B. & Jeffries, T.W. "An optimized transformation protocol for Lipomyces starkeyi." Current Genetics 60,3, 223-230+ (2014). [DOI: 10.1007/s00294-014-0427-0] DOI Google Scholar	Conversion
2014	Cao, H., Walton, J.D., Brumm, P. & Phillips, G.N. "Structure and substrate specificity of a eukaryotic fucosidase from Fusarium graminearum." Journal of Biological Chemistry 289,37, 25624-25638+ (2014). [DOI: 10.1074/jbc.M114.583286] DOI Google Scholar	Deconstruction
2014	Chen, J., John, R., Sun, G., McNulty, S., Normets, A., Xiao, J., Turner, M.G. & Franklin, J.F. "Chapter 6 - Carbon fluxes and storages in forests and landscapes." in Forest Landscapes and Global Change: Challenges for Research and Management. vol. XIII 139-166+ (Springer, 2014). [DOI: 10.1007/978-1-4939-0953-7] DOI Google Scholar	Sustainability
2014	Chiaramonti, D., Martelli, F., Balan, V. & Kumar, S. "Industrial initiatives towards lignocellulosic biofuel deployment: an assessment in US and EU." Chemical Engineering Transactions 37, 313-318+ (2014). [DOI: 10.3303/CET1437053] DOI Google Scholar	Deconstruction
2014	Childs, K.L., Nandety, A., Hirsch, C.N., Góngora-Castillo, E., Schmutz, J., Kaeppler, S.M., Casler, M.D. & Buell, R. "Generation of transcript assemblies and identification of single nucleotide polymorphisms from seven lowland and upland cultivars of switchgrass." The Plant Genome 7, 1-13+ (2014). [DOI: 10.3835/plantgenome2013.12.0041] DOI Google Scholar	Feedstocks
2014	Cole, J.R. & Tiedje, J.M. "History and impact of RDP: a legacy from Carl Woese to microbiology." RNA Biology 11,3, 239-243+ (2014). [DOI: 10.4161/rna.28306] DOI Google Scholar	Sustainability
2014	Cole, J.R., Wang, Q., Fish, J.A., Chai, B., McGarrell, D.M., Sun, Y., Brown, T., Porras-Alfaro, A., Kuske, C.R. & Tiedje, J.M. "Ribosomal Database Project: data and tools for high throughput rRNA analysis." Nucleic Acids Research 42,D1, (2014). [DOI: 10.1093/nar/gkt1244] DOI Google Scholar	Sustainability
2014	Collier, S.M., Ruark, M.D., Oates, L.G., Jokela, W.E. & Dell, C.J. "Measurement of greenhouse gas flux from agricultural soils using static chambers." Journal of Visualized Experiments 90, (2014). [DOI: 10.3791/52110] DOI Google Scholar	Sustainability
2014	Dale, B. "Sobering numbers." Resource Magazine November/December 2014, 25+ (2014). Google Scholar	Sustainability
2014	Dale, B.E., Anderson, J.E., Brown, R.C., Csonka, S., Dale, V.H., Herwick, G., Jackson, R.D., Jordan, N., Kaffka, S., Kline, K.L., et al. "Take a closer look: biofuels can support environmental, economic and social goals." Environmental Science & Technology 48,13, 7200–7203+ (2014). [DOI: 10.1021/es5025433] DOI Google Scholar	Sustainability
2014	Dale, B.E. & Kim, S. "Can the predictions of consequential life cycle assessment be tested in the real world? Comment on “Using Attributional Life Cycle Assessment to Estimate Climate-Change Mitigation..”." Journal of Industrial Ecology 18,3, 466-467+ (2014). [DOI: 10.1111/jiec.12151] DOI Google Scholar	Sustainability
2014	Dale, B.E. & Ong, R.G. "Design, implementation, and evaluation of sustainable bioenergy production systems." Biofuels, Bioproducts and Biorefining 8,4, 487-503+ (2014). [DOI: 10.1002/bbb.1504] DOI Google Scholar	Sustainability
2014	Deal, M.W., Xu, J., John, R., Zenone, T., Chen, J., Jasrotia, P., Kahmark, K., Bossenbroek, J. & Mayer, C. "Net primary production in three bioenergy crop systems following land conversion." Journal of Plant Ecology 7,5, 451-460+ (2014). [DOI: 10.1093/jpe/rtt057] DOI Google Scholar	Sustainability
2014	Deng, K., Takasuka, T.E., Heins, R., Cheng, X., Bergeman, L.F., Shi, J., Aschenbrener, R., Deutsch, S., Singh, S., Sale, K.L., et al. "Rapid kinetic characterization of glycosyl hydrolases based on oxime derivatization and nanostructure-initiator mass spectrometry (NIMS)." ACS Chemical Biology 9,7, 1470-1479+ (2014). [DOI: 10.1021/cb5000289] DOI Google Scholar	Deconstruction
2014	Diehl, B.G., Watts, H.D., Kubicki, J.D., Regner, M.R., Ralph, J. & Brown, N.R. "Towards lignin-protein crosslinking: amino acid adducts of a lignin model quinone methide." Cellulose 21, 1395-1407+ (2014). [DOI: 10.1007/s10570-014-0181-y] DOI Google Scholar	Feedstocks
2014	Evans, J., Kim, J., Childs, K.L., Vaillancourt, B., Crisovan, E., Nadety, A., Gerhardt, D.J., Richmond, T.A., Jeddeloh, J.A., Kaeppler, S.M., et al. "Nucleotide polymorphism and copy number variant detection using exome capture and next generation sequencing in the polyploidy grass Panicum virgatum." The Plant Journal 76,6, 993-1008+ (2014). [DOI: 10.1111/tpj.12601] DOI Google Scholar	Feedstocks
2014	Gall, D.L., Kim, H., Lu, F., Donohue, T.J., Noguera, D.R. & Ralph, J. "Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway." Journal of Biological Chemistry 289,12, 8656-8667+ (2014). [DOI: 10.1074/jbc.M113.536250] DOI Google Scholar	Feedstocks, Conversion
2014	Gall, D.L., Ralph, J., Donohue, T.J. & Noguera, D.R. "A group of sequence-related sphingomonad enzymes catalyzes cleavage of β-aryl ether linkages in lignin β-guaiacyl and β-syringyl ether dimers." Environmental Science & Technology 48,20, 12454-12463+ (2014). [DOI: 10.1021/es503886d] DOI Google Scholar	Feedstocks, Conversion
2014	Gao, D., Haarmeyer, C., Balan, V., Whitehead, T.A., Dale, B.E. & Chundawat, S.P.S. "Lignin triggers irreversible cellulase loss during pretreated lignocellulosic biomass saccharification." Biotechnology for Biofuels 7, 175+ (2014). [DOI: 10.1186/s13068-014-0175-x] DOI Google Scholar	Deconstruction
2014	Gao, X., Kumar, R., Singh, S., Simmons, B., Balan, V., Dale, B. & Wyman, C.E. "Comparison of enzymatic reactivity of corn stover solids prepared by dilute acid, AFEX™, and ionic liquid pretreatments." Biotechnology for Biofuels 7, 71+ (2014). [DOI: 10.1186/1754-6834-7-71] DOI Google Scholar	Deconstruction
2014	Gardner, J.G., Crouch, L., Labourel, A., Forsberg, Z., Bukhman, Y.V., Vaaje-Kolstad, G., Gilbert, H.J. & Keating, D.H. "Systems biology defines the biological significance of redox-active proteins during cellulose degradation in an aerobic bacterium." Molecular Microbiology 94,5, 1121-1133+ (2014). [DOI: 10.1111/mmi.12821] DOI Google Scholar	Conversion
2014	Gaskell, J., Marty, A., Mozuch, M., Kersten, P.J., Bondurant, S.S., Sabat, G., Azarpira, A., Ralph, J., Skyba, O., Mansfield, S.D., et al. "Influence of Populus genotype on gene expression by the wood decay fungus Phanerochaete chrysosporium." Applied and Environmental Microbiology 80,18, 5828-5835+ (2014). [DOI: 10.1128/AEM.01604-14.] DOI Google Scholar	Feedstocks
2014	Gilmanov, T.G., Baker, J.M., Bernacchi, C.J., Billesbach, D.P., Burba, G.G., Castro, S., Chen, J., Eugster, W., Fischer, M.L., Gamon, J.A., et al. "Productivity and carbon dioxide exchange of leguminous crops: estimates from flux tower measurements." Agronomy Journal 106,2, 545-559+ (2014). [DOI: 10.2134/agronj2013.0270] DOI Google Scholar	Sustainability