Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2016	Chen, W., McClelland, D.J., Azarpira, A., Ralph, J., Luo, Z. & Huber, G.W. "Low temperature hydrogenation of pyrolytic lignin over Ru/TiO2: 2D HSQC and 13C NMR study of reactants and products." Green Chemistry 18,1, 271-281+ (2016). [DOI: 10.1039/c5gc02286j] DOI Google Scholar	Feedstocks
2016	Chundawat, S.P.S., Paavola, C.D., Raman, B., Nouailler, M., Chan, S.L., Mielenz, J.R., Receveur-Brechot, V., Trent, J.D. & Dale, B.E. "Saccharification of thermochemically pretreated cellulosic biomass using native and engineered cellulosomal enzyme systems." Reaction Chemistry & Engineering 1,6, 616-628+ (2016). [DOI: 10.1039/C6RE00172F] DOI Google Scholar	Deconstruction
2016	Collier, S.M., Dean, A.P., Oates, L.G., Ruark, M.D. & Jackson, R.D. "Does plant biomass manipulation in static chambers affect nitrous oxide emissions from soils?" Journal of Environmental Quality 45,2, 751-756+ (2016). [DOI: 10.2134/jeq2015.07.0377] DOI Google Scholar	Sustainability
2016	Cornish, A.J., Ginovska, B., Thelen, A., da Silva, J.C.S., Soares, T.A., Raugei, S., Dupuis, M., Shaw, W.J. & Hegg, E.L. "Single-amino acid modifications reveal additional controls on the proton pathway of [FeFe]-hydrogenase." Biochemistry 55,22, 3165-3173+ (2016). [DOI: 10.1021/acs.biochem.5b01044] DOI Google Scholar	Conversion
2016	Cotten, C. & Reed, J.L. "Applications of constraint-based models for biochemical production." in Biotechnology for Biofuel Production and Optimization. 201-226+ (Elsevier, 2016). [DOI: 10.1016/B978-0-444-63475-7.00008-X] DOI Google Scholar	Conversion
2016	Jesus, E. da C., Liang, C., Quensen, J.F., Susilawati, E., Jackson, R.D., Balser, T.C. & Tiedje, J.M. "Influence of corn, switchgrass, and prairie cropping systems on soil microbial communities in the upper Midwest of the United States." Global Change Biology – Bioenergy 8, 481-494+ (2016). [DOI: 10.1111/gcbb.12289] DOI Google Scholar	Sustainability
2016	Sousa, L. da C., Foston, M., Bokade, V., Azarpira, A., Lu, F., Ragauskas, A.J., Ralph, J., Dale, B. & Balan, V. "Isolation and characterization of new lignin streams derived from extractive-ammonia (EA) pretreatment." Green Chemistry 18,15, 4205-4215+ (2016). [DOI: 10.1039/c6gc00298f] DOI Google Scholar	Feedstocks, Deconstruction
2016	Sousa, L. da C., Jin, M., Chundawat, S.P.S., Bokade, V., Tang, X., Azarpira, A., Lu, F., Avci, U., Humpula, J., Uppugundla, N., et al. "Next-generation ammonia pretreatment enhances cellulosic biofuel production." Energy & Environmental Science 9,4, 1215-1223+ (2016). [DOI: 10.1039/c5ee03051j] DOI Google Scholar	Feedstocks, Deconstruction
2016	Dickinson, Q., Bottoms, S., Hinchman, L., McIlwain, S., Li, S., Myers, C.L., Boone, C., Coon, J.J., Hebert, A., Sato, T.K., et al. "Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational engineering of a tolerant, xylose-fermenting strain." Microbial Cell Factories 15, 17+ (2016). [DOI: 10.1186/s12934-016-0417-7] DOI Google Scholar	Conversion
2016	Ding, S.-Y. "Nanoscale structure of biomass." in Reaction Pathways and Mechanisms in Thermocatalytic Biomass Conversion I, Green Chemistry and Sustainable Technology. 1-14+ (Springer Singapore, 2016). [DOI: 10.1007/978-981-287-688-1_1] DOI Google Scholar	Deconstruction
2016	Duncan, D.S., Jewell, K.A., Suen, G. & Jackson, R.D. "Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods." Soil Biology and Biochemistry 96, 160-168+ (2016). [DOI: 10.1016/j.soilbio.2016.02.002] DOI Google Scholar	Sustainability
2016	Duran, B.E.L., Duncan, D.S., Oates, L.G., Kucharik, C.J. & Jackson, R.D. "Nitrogen fertilization effects on productivity and nitrogen loss in three grass-based perennial bioenergy cropping systems." PLOS ONE 11,3, (2016). [DOI: 10.1371/journal.pone.0151919] DOI Google Scholar	Sustainability
2016	Ferris, A.M. & Rothamer, D.A. "Methodology for the experimental measurement of vapor-liquid equilibrium distillation curves using a modified ASTM D86 setup." Fuel 182, 467-479+ (2016). [DOI: 10.1016/j.fuel.2016.05.099] DOI Google Scholar	Conversion
2016	Fox, A.F., Kim, T.N., Bahlai, C.A., Woltz, M., Gratton, C. & Landis, D.A. "Cover crops have neutral effects on predator communities and biological control services in annual cellulosic bioenergy cropping systems." Agriculture, Ecosystems & Environment 232, 101-109+ (2016). [DOI: 10.1016/j.agee.2016.07.003] DOI Google Scholar	Sustainability
2016	Garoutte, A., Cardenas, E., Tiedje, J. & Howe, A. "Methodologies for probing the metatranscriptome of grassland soil." Journal of Microbiological Methods 131, 122-129+ (2016). [DOI: 10.1016/j.mimet.2016.10.018] DOI Google Scholar	Sustainability
2016	Geertsema, W., Rossing, W.A.H., Landis, D.A., Bianchi, F.J.J., van Rijn, P.C.J., Schaminée, J.H.J., Tscharntke, T. & van der Werf, W. "Actionable knowledge for ecological intensification of agriculture." Frontiers in Ecology and the Environment 14,4, 209-216+ (2016). [DOI: 10.1002/fee.1258] DOI Google Scholar	Sustainability
2016	Gelfand, I., Shcherbak, I., Millar, N., Kravchenko, A.N. & Robertson, P. "Long-term nitrous oxide fluxes in annual and perennial agricultural and unmanaged ecosystems in the upper Midwest USA." Global Change Biology 22,11, 3594-3607+ (2016). [DOI: 10.1111/gcb.13426] DOI Google Scholar	Sustainability
2016	Ghosh, I.N. & Landick, R. "OptSSeq: high-throughput sequencing readout of growth enrichment defines optimal gene expression elements for homoethanologenesis." ACS Synthetic Biology 5,12, 1519-1534+ (2016). [DOI: 10.1021/acssynbio.6b00121] DOI Google Scholar	Conversion
2016	Guo, J., Cole, J.R., Zhang, Q., Brown, T. & Tiedje, J.M. "Microbial community analysis with ribosomal gene fragments from shotgun metagenomes." Applied and Environmental Microbiology 82,1, 157-166+ (2016). [DOI: 10.1128/AEM.02772-15] DOI Google Scholar	Sustainability
2016	Ha, C.M., Escamilla-Trevino, L., Yarce, J.C.S., Kim, H., Ralph, J., Chen, F. & Dixon, R.A. "An essential role of caffeoyl shikimate esterase in monolignol biosynthesis in Medicago truncatula." The Plant Journal 86,5, 363-375+ (2016). [DOI: 10.1111/tpj.13177] DOI Google Scholar	Feedstocks
2016	Han, J., Chen, J., Miao, Y. & Wan, S. "Multiple resource use efficiency (mRUE): a new concept for ecosystem production." Scientific Reports 6, 37453+ (2016). [DOI: 10.1038/srep37453 http://www.nature.com/articles/srep37453#supplementary-information] DOI Google Scholar	Sustainability
2016	Hao, X., Thelen, K. & Gao, J. "Spatial variability in biomass yield of switchgrass, native prairie, and corn at field scale." Agronomy Journal 108,2, 548-558+ (2016). [DOI: 10.2134/agronj2015.0167] DOI Google Scholar	Sustainability
2016	Harman-Ware, A.E., Foster, C., Happs, R.M., Doeppke, C., Meunier, K., Gehan, J., Yue, F., Lu, F. & Davis, M. "Quantitative analysis of lignin monomers by a thioacidolysis method tailored for higher-throughput analysis." Biotechnology Journal 11,10, 1268-1273+ (2016). [DOI: 10.1002/biot.201600266] DOI Google Scholar
2016	Helmich, K.E., Pereira, J.H., Gall, D.L., Heins, R.A., McAndrew, R.P., Bingman, C., Deng, K., Holland, K.C., Noguera, D.R., Simmons, B.A., et al. "Structural basis of stereospecificity in the bacterial enzymatic cleavage of β-aryl ether bonds in lignin." Journal of Biological Chemistry 291,10, 5234-5246+ (2016). [DOI: 10.1074/jbc.M115.694307] DOI Google Scholar	Feedstocks, Conversion
2016	Hirsch, C.N., Hirsch, C.D., Brohammer, A.B., Bowman, M.J., Soifer, I., Barad, O., Shem-Tov, D., Baruch, K., Lu, F., Hernandez, A.G., et al. "Draft assembly of elite inbred line PH207 provides insights into genomic and transcriptome diversity in maize." The Plant Cell 28,11, 2700-2714+ (2016). [DOI: 10.1105/tpc.16.00353] DOI Google Scholar	Feedstocks