Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2022	Malmstrom, C.M., Busch, A.K., Cole, E.A., Trebicki, P., Berndardo, P., Brown, A.K., Landis, D.A. & Werling, B.P. "Emerging wild virus of native grass bioenergy feedstock is well established in the Midwestern USA and associated with premature stand senescence." Global Change Biology – Bioenergy 14,4, 463-480+ (2022). [DOI: 10.1111/gcbb.12927] DOI Google Scholar	Sustainability
2022	Martin, T. & Sprunger, C. D. "Sensitive measures of soil health reveal carbon stability across a management intensity and plant biodiversity gradient." Frontiers in Soil Science 2, 917885+ (2022). [DOI: 10.3389/fsoil.2022.917885] DOI Google Scholar	Sustainability
2022	Martinez-Feria, R., Basso, B. & Kim, S. "Boosting climate change mitigation potential of perennial lignocellulosic crops grown on marginal lands." Environmental Research Letters 17, 044004+ (2022). [DOI: 10.1088/1748-9326/ac541b] DOI Google Scholar	Sustainability
2022	McDaniel, E.A., van Steenbrugge, J.J.M., Noguera, D.R., Raaijmakers, J.M., Medema, M.H. & Oyserman, B.O. "TbasCO: trait-based comparative ‘omics identifies ecosystem-level and niche-differentiating adaptations of an engineered microbiome." ISME Communications 2, 111+ (2022). [DOI: 10.1038/s43705-022-00189-2] DOI Google Scholar
2022	McKenzie, A.M., Henry, C., Myers, K.S., Place, M.M. & Keck, J.L. "Identification of genetic interactions with priB links the PriA/PriB DNA replication restart pathway to double-strand DNA break repair in Escherichia coli." G3: Genes \| Genomes \| Genetics 12,12, (2022). [DOI: 10.1093/g3journal/jkac295] DOI Google Scholar
2022	Menefee, D., Scott, R.L., Abraha, M., Alfieri, J.G., Baker, J., Browning, D.M., Chen, J., Gonet, J., Johnson, J.M.F., Miller, G.R., et al. "Unraveling the effects of management and climate on carbon fluxes of U.S. croplands using the USDA Long-Term Agroecosystem (LTAR) network." Agricultural and Forest Meteorology 326, 109154+ (2022). [DOI: 10.1016/j.agrformet.2022.109154] DOI Google Scholar
2022	Moore, B.M., Lee, Y.S., Wang, P., Azodi, C., Grotewold, E. & Shiu, S.-H. "Modeling temporal and hormonal regulation of plant transcriptional response to wounding." The Plant Cell 34,2, 867-888+ (2022). [DOI: 10.1093/plcell/koab287] DOI Google Scholar
2022	Morais, A.R.C., Zhang, J., Dong, H., Otto, W.G., Mokomele, T., Hodge, D., Balan, V., Dale, B.E., Lukasik, R.M. & Sousa, L. da C. "Development of an ammonia pretreatment that creates synergies between biorefineries and advanced biomass logistics models." Green Chemistry 24,11, 4443-4462+ (2022). [DOI: 10.1039/D2GC00488G] DOI Google Scholar	Deconstruction
2022	Moran, J.J., Linley, T.J., Makarem, C.N., Kelly, J.F., Freeburg, E.D.W., Cleary, D.M., Alexander, L. & Kriesel, J.M. "Spectroscopy-based isotopic (δ13C) analysis for high spatial resolution of carbon exchange in the rhizosphere." Rhizosphere 23, 100564+ (2022). [DOI: 10.1016/j.rhisph.2022.100564] DOI Google Scholar	Sustainability
2022	Mottiar, Y. & Mansfield, S.D. "Lignin p-hydroxybenzoylation Is negatively correlated with syringyl units in poplar." Frontiers in Plant Science 13, 938083+ (2022). [DOI: 10.3389/fpls.2022.938083] DOI Google Scholar
2022	Mozzachiodi, S., Bai, F.-Y., Baldrian, P., Bell, G., Boundy-Mills, K., Buzzini, P., Cadez, N., Cubillos, F.A., Dashko, S., Dimitrov, R., et al. "Yeasts from temperate forests." Yeast 39,1-2, 4-24+ (2022). [DOI: 10.1002/yea.3699] DOI Google Scholar
2022	Muro-Villanueva, F., Kim, H., Ralph, J. & Chapple, C. "H-lignin can be deposited independently of CINNAMYL ALCOHOL DEHYDROGENASE C and D in Arabidopsis." Plant Physiology 189,4, 2015-2028+ (2022). [DOI: 10.1093/plphys/kiac210] DOI Google Scholar
2022	Myers, K.S., Lal, P.B., Noguera, D.R. & Donohue, T.J. "Using genome scale mutant libraries to identify essential genes." in Methods in Molecular Biology. vol. 2377 215-236+ (Humana, 2022). [DOI: 10.1007/978-1-0716-1720-5_12] DOI Google Scholar
2022	Napier, J.D., Grabowski, P.P., Lovell, J.T., Bonnette, J., Mamidi, S., Gomez-Hughes, M.J., VanWallendael, A., Weng, X., Handley, L.H., Kim, M.K., et al. "A generalist–specialist trade-off between switchgrass cytotypes impacts climate adaptation and geographic range." Proceedings of the National Academy of Sciences of the United States of America 119,15, (2022). [DOI: 10.1073/pnas.2118879119] DOI Google Scholar
2022	Noble, J.A., Bielski, N., Liu, M.-C.J., DeFalco, T.A., Stegmann, M., Nelson, A.D.L., McNamara, K., Sullivan, B., Dinh, K.K., Khuu, N., et al. "Evolutionary analysis of the LORELEI gene family in plants reveals regulatory subfunctionalization." Plant Physiology 190,4, 2539-2556+ (2022). [DOI: 10.1093/plphys/kiac444] DOI Google Scholar
2022	Noble, J.A., Seddon, A., Uygun, S., Bright, A., Smith, S.E., Shiu, S.-H. & Palanivelu, R. "The SEEL motif and members of the MYB-related REVEILLE transcription factor family are important for the expression of LORELEI in the synergid cells of the Arabidopsis female gametophyte." Plant Reproduction 35,1, 61-76+ (2022). [DOI: 10.1007/s00497-021-00432-1] DOI Google Scholar	Sustainability
2022	O'Neill, E.G., Martinez-Feria, R.A., Basso, B. & Maravelias, C.T. "Integrated spatially explicit landscape and cellulosic biofuel supply chain optimization under biomass yield uncertainty." Computers & Chemical Engineering 160, 107724+ (2022). [DOI: 10.1016/j.compchemeng.2022.107724] DOI Google Scholar	Sustainability
2022	Ohnuki, S., Ogawa, I., Itto-Nakama, K., Lu, F., Ranjan, A., Kabbage, M., Gebre, A.A., Yamashita, M., Li, S.C., Yashiroda, Y., et al. "High-throughput platform for yeast morphological profiling predicts the targets of bioactive compounds." npj Systems Biology Applications 8,1, 3+ (2022). [DOI: 10.1038/s41540-022-00212-1] DOI Google Scholar
2022	Padmakshan, D., Timokhin, V.I., Lu, F., Schatz, P.F., Vanholme, R., Boerjan, W. & Ralph, J. "Synthesis of hydroxycinnamoyl shikimates and their role in monolignol biosynthesis." Holzforschung 76,2, 133-144+ (2022). [DOI: 10.1515/hf-2021-0149] DOI Google Scholar
2022	Pan, D., Gelfand, I., Tao, L., Abraha, M., Sun, K., Guo, X., Chen, J., Robertson, P. & Zondlo, M.A. "A new open-path eddy covariance method for nitrous oxide and other trace gases that minimizes temperature corrections." Global Change Biology 28,4, 1446-1457+ (2022). [DOI: 10.1111/gcb.15986] DOI Google Scholar
2022	Perez, J.M., Sener, C., Misra, S., Umana, G.E., Coplien, J., Haak, D., Li, Y., Maravelias, C.T., Karlen, S.D., Ralph, J., et al. "Integrating lignin depolymerization with microbial funneling processes using agronomically relevant feedstocks." Green Chemistry 24,7, 2795-2811+ (2022). [DOI: 10.1039/D1GC03592D] DOI Google Scholar
2022	Ranaweera, T., Brown, B.N.I., Wang, P. & Shiu, S.-H. "Temporal regulation of cold transcriptional response in switchgrass." Frontiers in Plant Science 13, 998400+ (2022). [DOI: 10.3389/fpls.2022.998400] DOI Google Scholar	Sustainability
2022	Rencoret, J., Rosado, M.J., Kim, H., Timokhin, V.I., Gutiérrez, A., Bausch, F., Rosenau, T., Potthast, A., Ralph, J. & del Río, J.C. "Flavonoids naringenin chalcone, naringenin, dihydrotricin, and tricin are lignin monomers in papyrus." Plant Physiology 188,1, 208-219+ (2022). [DOI: 10.1093/plphys/kiab469] DOI Google Scholar
2022	Robertson, P., Hamilton, S.K., Paustian, K. & Smith, P. "Land-based climate solutions for the United States." Global Change Biology 28,16, 4912-4919+ (2022). [DOI: 10.1111/gcb.16267] DOI Google Scholar
2022	Sakai, S. & Rothamer, D. "Relative particle emission tendencies of 2-methyl-3-buten-2-ol–gasoline, isobutanol–gasoline, and ethanol–gasoline blends from premixed combustion in a spark-ignition engine." Fuel 324, 124638+ (2022). [DOI: 10.1016/j.fuel.2022.124638] DOI Google Scholar