Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2022	Harrison, M.-C., Labella, A.L., Hittinger, C.T. & Rokas, A. "The evolution of the GALactose utilization pathway in budding yeasts." Trends in Genetics 38,1, 97-106+ (2022). [DOI: 10.1016/j.tig.2021.08.013] DOI Google Scholar
2022	Hoengenaert, L., Wouters, M., Kim, H., De Meester, B., Morreel, K., Vandersyppe, S., Pollier, J., Desmet, S., Goeminne, G., Ralph, J., et al. "Overexpression of the scopoletin biosynthetic pathway enhances lignocellulosic biomass processing." Science Advances 8,28, (2022). [DOI: 10.1126/sciadv.abo5738] DOI Google Scholar
2022	Hu, S., Kamimura, N., Sakamoto, S., Nagano, S., Takata, N., Liu, S., Goeminne, G., Vanholme, R., Uesugi, M., Yamamoto, M., et al. "Rerouting of the lignin biosynthetic pathway by inhibition of cytosolic shikimate recycling in transgenic hybrid aspen." The Plant Journal 110,2, 358-376+ (2022). [DOI: 10.1111/tpj.15674] DOI Google Scholar
2022	Huang, X., Wang, W., Gong, T., Wickell, D., Kuo, L.-Y., Zhang, X., Wen, J., Kim, H., Lu, F., Zhao, H., et al. "The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence." Nature Plants 8,5, 500-512+ (2022). [DOI: 10.1038/s41477-022-01146-6] DOI Google Scholar
2022	Ingle, A.T., Fortney, N.W., Myers, K.S., Walters, K.A., Scarborough, M.J., Donohue, T.J. & Noguera, D.R. "Metagenome-assembled genomes from a microbiome grown in dairy manure hydrolysate." Microbiology Resource Announcements 11,8, (2022). [DOI: 10.1128/mra.00292-22] DOI Google Scholar
2022	Je, L., Huber, G.W., Van Lehn, R.C. & Zavala, V.M. "On the integration of molecular dynamics, data science, and experiments for studying solvent effects on catalysis." Current Opinion in Chemical Engineering 36, 100796+ (2022). [DOI: 10.1016/j.coche.2022.100796] DOI Google Scholar
2022	Khana, D.B., Callaghan, M.M. & Amador-Noguez, D. "Novel computational and experimental approaches for investigating the thermodynamics of metabolic networks." Current Opinion in Microbiology 66, 21-31+ (2022). [DOI: 10.1016/j.mib.2021.11.007] DOI Google Scholar
2022	Khosrozadeh, S., Guber, A., Kravchenko, A., Ghaderi, N. & Blagodatskaya, E. "Soil oxidoreductase zymography: visualizing spatial distributions of peroxidase and phenol oxidase activities at the root-soil interface." Soil Biology and Biochemistry 167, 108610+ (2022). [DOI: 10.1016/j.soilbio.2022.108610] DOI Google Scholar
2022	Kim, K., Gil, J., Ostrom, N.E., Gandhi, H., Oerther, M.S., Kuzyakov, Y., Guber, A.K. & Kravchenko, A.N. "Soil pore architecture and rhizosphere legacy define N2O production in root detritusphere." Soil Biology and Biochemistry 166, 108565+ (2022). [DOI: 10.1016/j.soilbio.2022.108565] DOI Google Scholar
2022	Kim, T.N., Bukhman, Y.V., Jusino, M.A., Scully, E.D., Spiesman, B.J. & Gratton, C. "Using high-throughput amplicon sequencing to determine diet of generalist lady beetles in agricultural landscapes." Biological Control 170, 104920+ (2022). [DOI: 10.1016/j.biocontrol.2022.104920] DOI Google Scholar	Sustainability
2022	Kittredge, H.A., Dougherty, K.M. & Evans, S.E. "Dead but not forgotten: how extracellular DNA, moisture, and space modulate the horizontal transfer of extracellular antibiotic resistance genes in soil." Environmental Microbiology 88,7, (2022). [DOI: 10.1128/aem.02280-21] DOI Google Scholar	Sustainability
2022	Ko, D.K. & Brandizzi, F. "Advanced genomics identifies growth effectors for proteotoxic ER stress recovery in Arabidopsis thaliana." Communications Biology 5, 16+ (2022). [DOI: 10.1038/s42003-021-02964-8] DOI Google Scholar
2022	Ko, D.K. & Brandizzi, F. "Transcriptional competition shapes proteotoxic ER stress resolution." Nature Plants 8,5, 481-490+ (2022). [DOI: 10.1038/s41477-022-01150-w] DOI Google Scholar
2022	Krause, D.J. & Hittinger, C.T. "Functional divergence in a multi-gene family is a key evolutionary innovation for anaerobic growth in Saccharomyces cerevisiae." Molecular Biolology and Evolution 39,10, (2022). [DOI: 10.1093/molbev/msac202] DOI Google Scholar
2022	Kravchenko, A.N., Richardson, J.A., Lee, J.H. & Guber, A.K. "Distribution of Mn oxidation states in grassland soils and their relationships with soil pores." Environmental Science & Technology 56,22, 16462-16472+ (2022). [DOI: 10.1021/acs.est.2c05403] DOI Google Scholar
2022	Lakey, B.D., Myers, K.S., Alberge, F., Mettert, E.L., Kiley, P.J., Noguera, D.R. & Donohue, T.J. "The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis." PLOS Genetics 18,6, (2022). [DOI: 10.1371/journal.pgen.1010270] DOI Google Scholar
2022	Lal, P.B., Wells, F. & Kiley, P.J. "Creation of markerless genome modifications in a nonmodel bacterium by fluorescence-aided recombineering." Methods in Molecular Biology 2479, 53-70+ (2022). [DOI: 10.1007/978-1-0716-2233-9_5] DOI Google Scholar
2022	Lamb, A., Weers, B., McKinley, B., Rooney, W., Morgan, C., Marshalll-Colon, A. & Mullet, J. "Bioenergy sorghum’s deep roots: a key to sustainable biomass production on annual cropland." Global Change Biology – Bioenergy 14,2, 132-156+ (2022). [DOI: 10.1111/gcbb.12907] DOI Google Scholar
2022	Lark, T.J., Hendricks, N.P., Smith, A., Pates, N., Spawn-Lee, S.A., Bougie, M., Booth, E.G., Kucharik, C.J. & Gibbs, H.K. "Environmental outcomes of the US Renewable Fuel Standard." Proceedings of the National Academy of Sciences of the United States of America 119,9, (2022). [DOI: 10.1073/pnas.2101084119] DOI Google Scholar	Sustainability
2022	Li, J., Maravelias, C.T. & Van Lehn, R.C. "Adaptive conformer sampling for property prediction using the conductor-like screening model for real solvents." Industrial & Engineering Chemistry Research 61,25, 9025-9036+ (2022). [DOI: 10.1021/acs.iecr.2c01163] DOI Google Scholar
2022	Li, X., Sarma, S.J., Sumner, L.W., Jones, D. & Last, R.L. "Switchgrass metabolomics reveals striking genotypic and developmental differences in specialized metabolic phenotypes." Journal of Agricultural and Food Chemistry 70,26, 8010-8023+ (2022). [DOI: 10.1021/acs.jafc.2c01306] DOI Google Scholar	Sustainability
2022	Li, Y., Liu, H., Steenwyk, J.L., Labella, A.L., Harrison, M.-C., Groenewald, M., Zhou, X., Shen, X.-X., Zhao, T., Hittinger, C.T., et al. "Contrasting modes of macro and microsynteny evolution in a eukaryotic subphylum." Current Biology 32, 5335-5343+ (2022). [DOI: 10.1016/j.cub.2022.10.025] DOI Google Scholar
2022	Linz, A.M., Ma, Y., Scholz, S., Noguera, D.R. & Donohue, T.J. "iNovo479: metabolic modeling provides a roadmap to optimize bioproduct yield from deconstructed lignin aromatics by Novosphingobium aromaticivorans." Metabolites 12,4, 366+ (2022). [DOI: 10.3390/metabo12040366] DOI Google Scholar
2022	Liu, Y., Evans, S.E., Friesen, M.L. & Tiemann, L.K. "Root exudates shift how N mineralization and N fixation contribute to the plant-available N supply in low fertility soils." Soil Biology and Biochemistry 165, 108541+ (2022). [DOI: 10.1016/j.soilbio.2021.108541] DOI Google Scholar	Sustainability
2022	Mahon, E.L., de Vries, L., Jang, S.-K., Middar, S., Kim, H., Unda, F., Ralph, J. & Mansfield, S.D. "Exogenous chalcone synthase expression in developing poplar xylem incorporates naringenin into lignins." Plant Physiology 188, 984-996+ (2022). [DOI: 10.1093/plphys/kiab499] DOI Google Scholar