Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2021
Ma, Y., Donohue, T.J. & Noguera, D.R. "Kinetic modeling of anaerobic degradation of plant-derived aromatic mixtures by Rhodopseudomonas palustris." Biodegradation 32,2, 179–192+ (2021). [DOI: 10.1007/s10532-021-09932-3]
2021
Maestrini, B. & Basso, B. "Subfield crop yields and temporal stability in thousands of US Midwest fields." Precision Agriculture 22,6, 1749–1767+ (2021). [DOI: 10.1007/s11119-021-09810-1]
Sustainability
2021
Martien, J.I., Trujillo, E.A., Jacobson, T.B., Tatli, M., Hebert, A.S., Stevenson, D.M., Coon, J.J. & Amador-Noguez, D. "Metabolic remodeling during nitrogen fixation in Zymomonas mobilis." mSystems 6,6, (2021). [DOI: 10.1128/mSystems.00987-21]
2021
McDaniel, E.A., Moya-Flores, F., Beach, N.K., Camejo, P.Y., Oyserman, B.O., Kizaric, M., Khor, E.H., Noguera, D.R. & McMahon, K.D. "Metabolic differentiation of co-occurring Accumulibacter clades revealed through genome-resolved metatranscriptomics." mSystems 6,4, (2021). [DOI: 10.1128/mSystems.00474-21]
2021
McDaniel, E.A., Wever, R., Oyserman, B.O., Noguera, D.R. & McMahon, K.D. "Genome-resolved metagenomics of a photosynthetic bioreactor performing biological nutrient removal." Microbiology Resource Announcements 10,18, (2021). [DOI: 10.1128/MRA.00244-21]
2021
Mosier, S., Córdova, C.S. & Robertson, P. "Restoring soil fertility on degraded lands to meet food, fuel, and climate security needs via perennialization." Frontiers in Sustainable Food Systems 5, 706142+ (2021). [DOI: 10.3389/fsufs.2021.706142]
2021
Murphy, E.K., Mottiar, Y., Soolanayakanahally, R.Y. & Mansfield, S.D. "Variations in cell wall traits impact saccharification potential of Salix famelica and Salix eriocephala." Biomass & Bioenergy 148, 106051+ (2021). [DOI: 10.1016/j.biombioe.2021.106051]
Feedstocks
2021
Myers, K.S., Noguera, D.R. & Donohue, T.J. "Promoter architecture differences among Alphaproteobacteria and other bacterial taxa." mSystems 6,4, (2021). [DOI: 10.1128/mSystems.00526-21]
2021
Myers, K.S., Place, M., Kominek, J., Noguera, D.R. & Donohue, T.J. "Delila-PY, a pipeline for utilizing the Delila suite of software to identify potential DNA binding motifs." Microbiology Resource Announcements 10,15, (2021). [DOI: 10.1128/MRA.00160-21]
2021
Nayfach, S., Roux, S., Seshadri, R., Udwary, D., Varghese, N., Schulz, F., Wu, D., Paez-Espino, D., Chen, I.-M., Huntemann, M., et al. "A genomic catalog of Earth's microbiomes." Nature Biotechnology 39,4, 499-509+ (2021). [DOI: 10.1038/s41587-020-0718-6]
2021
Ntana, F., Bhat, W.W., Johnson, S.R., Jorgensen, H.J.L., Collinge, D.B., Jensen, B. & Hamberger, B. "A sesquiterpene synthase from the endophytic fungus Serendipita indica catalyzes formation of viridiflorol." Biomolecules 11,6, 898+ (2021). [DOI: 10.3390/biom11060898]
2021
O'Brien, C.E., Oliveira-Pacheco, J., Cinneide, E.O., Haase, M.A.B., Hittinger, C.T., Rogers, T.R., Zaragoza, O., Bond, U. & Butler, G. "Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples." PLOS Pathogens 17,3, (2021). [DOI: 10.1371/journal.ppat.1009138]
2021
O’Neill, E.G. & Maravelias, C.T. "Towards integrated landscape design and biofuel supply chain optimization." Current Opinion in Chemical Engineering 31, 100666+ (2021). [DOI: 10.1016/j.coche.2020.100666]
Sustainability
2021
Oates, N.C., Abood, A., Schirmacher, A.M., Alessi, A.M., Bird, S.M., Bennett, J.P., Leadbeater, D.R., Li, Y., Dowle, A.A., Liu, S., et al. "A multi-omics approach to lignocellulolytic enzyme discovery reveals a new ligninase activity from Parascedosporium putredinis NO1." Proceedings of the National Academy of Sciences of the United States of America 118,18, (2021). [DOI: 10.1073/pnas.2008888118]
2021
Oliver, J., Fan, M., McKinley, B., Zemelis-Durfee, S., Brandizzi, F., Wilkerson, C. & Mullet, J.E. "The AGCVIII kinase Dw2 modulates cell proliferation, endomembrane trafficking, and MLG/xylan cell wall localization in elongating stem internodes of Sorghum bicolor." The Plant Journal 105,4, 1053-1071+ (2021). [DOI: 10.1111/tpj.15086]
2021
Ostrom, P.H., DeCamp, S., Gandhi, H., Haslun, J. & Ostrom, N.E. "The influence of tillage and fertilizer on the flux and source of nitrous oxide with reference to atmospheric variation using laser spectroscopy." Biogeochemistry 152, 143-159+ (2021). [DOI: 10.1007/s10533-020-00742-y]
2021
Perez, J.M., Kontur, W.S., Gehl, C., Gille, D.M., Ma, Y., Niles, A.V., Umana, G., Donohue, T.J. & Noguera, D.R. "Redundancy in aromatic O-demethylation and ring opening reactions in Novosphingobium aromaticivorans and their impact in the metabolism of plant derived phenolics." Applied and Environmental Microbiology 87,8, (2021). [DOI: 10.1128/AEM.02794-20]
2021
Reed, D.E., Poe, J., Abraha, M., Dahlin, K.M. & Chen, J. "Modeled surface-atmosphere fluxes from paired sites in the Upper Great Lakes Region using neural networks." JGR Biogeosciences 126,8, (2021). [DOI: 10.1029/2021JG006363]
Sustainability
2021
Robinson, D.E., Place, M., Hose, J., Jochem, A. & Gasch, A.P. "Natural variation in the consequences of gene overexpression and its implications for evolutionary trajectories." eLife 10, (2021). [DOI: 10.7554/eLife.70564]
2021
Roley, S.S., Ulbrich, T.C. & Robertson, P. "Nitrogen fixation and resorption efficiency differences among twelve upland and lowland switchgrass cultivars." Phytobiomes Journal 5,1, 97-107+ (2021). [DOI: 10.1094/PBIOMES-11-19-0064-FI]
2021
Roney, H.E. & Walker, B.J. "Photon to plate: a holistic view of photosynthetic and anthropogenic energy fluxes." Food and Energy Security DOI: 10.1002/fes3.348, (2021). [DOI: 10.1002/fes3.348]
2021
Ryu, J. & Maravelias, C.T. "A generalized distillation network synthesis model." Chemical Engineering Science 244, 116766+ (2021). [DOI: 10.1016/j.ces.2021.116766]
Deconstruction, Sustainability
2021
Saha, D., Basso, B. & Robertson, P. "Machine learning improves predictions of agricultural nitrous oxide (N2O) emissions from intensively managed cropping systems." Environmental Research Letters 16,2, 024004+ (2021). [DOI: 10.1088/1748-9326/abd2f3]
Sustainability
2021
Saha, P., Lin, F., Thibivilliers, S., Xiong, Y., Pan, C. & Bartley, L.E. "Phenylpropanoid biosynthesis gene expression precedes lignin accumulation during shoot cevelopment in lowland and upland switchgrass genotypes." Frontiers in Plant Science 12, 640930+ (2021). [DOI: 10.3389/fpls.2021.640930]
2021
Schulte, L.A., Dale, B.E., Bozzetto, S., Liebman, M., Souza, G.M., Haddad, N., Richard, T.L., Brown, R.C., Hilbert, J.A. & Arbuckle, G. "Meeting global challenges with regenerative agriculture producing food and energy." Nature Sustainability 5, 384-388+ (2021). [DOI: 10.1038/s41893-021-00827-y]
Sustainability