Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2022	Wadler, C.S., Wolters, J.F., Fortney, N.W., Throckmorton, K.O., Zhang, Y., Miller, C.R., Schneider, R.M., Wendt-Pienkowski, E., Currie, C.R., Donohue, T.J., et al. "Utilization of lignocellulosic biofuel conversion residue by diverse microorganisms." Biotechnology for Biofuels and Bioproducts 15,1, 70+ (2022). [DOI: 10.1186/s13068-022-02168-0] DOI Google Scholar
2022	Walters, K.A., Myers, K.S., Wang, H., Fortney, N.W., Ingle, A.T., Scarborough, M.J., Donohue, T.J. & Noguera, D.R. "Metagenomes and metagenome-assembled genomes from microbial communities fermenting ultrafiltered milk permeate." Microbiology Resource Announcements 11,7, (2022). [DOI: 10.1128/mra.00293-22] DOI Google Scholar
2022	Wang, P., Meng, F., Donaldson, P., Horan, S., Panchy, N.L., Vischulis, E., Winship, E., Conner, J.K., Krysan, P.J., Shiu, S.-H., et al. "High-throughput measurement of plant fitness traits with an object detection method using Faster R-CNN." New Phytologist 234,4, 1521-1533+ (2022). [DOI: 10.1111/nph.18056] DOI Google Scholar
2022	Wang, P., Schumacher, A.M. & Shiu, S.-H. "Computational prediction of plant metabolic pathways." Current Opinion in Plant Biology 66, 102171+ (2022). [DOI: 10.1016/j.pbi.2021.102171] DOI Google Scholar	Sustainability
2022	Willick, I.R. & Lowry, D.B. "Cold acclimation threshold induction temperatures of switchgrass ecotypes grown under a long and short photoperiod." Physiologia Plantarum 174,6, (2022). [DOI: 10.1111/ppl.13812] DOI Google Scholar	Sustainability
2022	York, L.M., Cumming, J.R., Trusiak, A., Bonito, G., von Haden, A.C., Kalluri, U.C., Tiemann, L.K., Andeer, P.F., Blanc-Betes, E., Diab, J.H., et al. "Bioenergy underground: challenges and opportunities for phenotyping roots and the microbiome for sustainable bioenergycrop production." The Plant Phenome Journal 5,1, (2022). [DOI: 10.1002/ppj2.20028] DOI Google Scholar
2022	Yu, K.M.J., Oliver, J., McKinley, B., Weers, B., Fabich, H.T., Evetts, N., Conradi, M.S., Altobelli, S.A., Marshall-Colon, A. & Mullet, J. "Bioenergy sorghum stem growth regulation: intercalary meristem localization, development and gene regulatory network analysis." The Plant Journal 112,2, 476-492+ (2022). [DOI: 10.1111/tpj.15960] DOI Google Scholar
2022	Zahorec, A., Reid, M.L., Tiemann, L.K. & Landis, D.A. "Perennial grass bioenergy cropping systems: impacts on soil fauna and implications for soil carbon accrual." Global Change Biology – Bioenergy 14,1, 4-23+ (2022). [DOI: 10.1111/gcbb.12903] DOI Google Scholar
2022	Zhang, B., Munske, G.R., Timokhin, V.I., Ralph, J., Davydov, D.R., Vermerris, W., Sattler, S.E. & Kang, C.H. "Functional and structural insight into the flexibility of cytochrome P450 reductases from Sorghum bicolor and its implications for lignin composition." Journal of Biological Chemistry 298,4, 101761+ (2022). [DOI: 10.1016/j.jbc.2022.101761] DOI Google Scholar
2022	Zhang, L., MacQueen, A., Weng, X., Behrman, K.D., Bonnette, J., Reilley, J.L., Rouquette, F.M., Fay, P.A., Wu, Y., Fritschi, F.B., et al. "The genetic basis for panicle trait variation in switchgrass (Panicum virgatum)." Theoretical and Applied Genetics 135,8, 2577-2592+ (2022). [DOI: 10.1007/s00122-022-04096-x] DOI Google Scholar	Sustainability
2022	Zhang, Y., Myers, K.S., Place, M., Serate, J., Xie, D., Pohlmann, E., La Reau, A., Landick, R. & Sato, T.K. "Transcriptomic data sets for Zymomonas mobilis 2032 during fermentation of ammonia fiber expansion (AFEX)-pretreated corn stover and switchgrass hydrolysates." Microbiology Resource Announcements 11,9, (2022). [DOI: 10.1128/mra.00564-22] DOI Google Scholar
2022	Zheng, H., Guber, A.K., Kuzyakov, Y., Zhang, W. & Kravchenko, A.N. "Plant species and plant neighbor identity affect associations between plant assimilated C inputs and soil pores." Geoderma 407, 115565+ (2022). [DOI: 10.1016/j.geoderma.2021.115565] DOI Google Scholar
2022	Zhou, Y., Klinger, G.E., Hegg, E.L., Saffron, C.M. & Jackson, J.E. "Skeletal Ni electrode-catalyzed C-O cleavage of diaryl ethers entails direct elimination via benzyne intermediates." Nature Communications 13,1, 2050+ (2022). [DOI: 10.1038/s41467-022-29555-3] DOI Google Scholar	Deconstruction
2022	Gambacorta, F.V., Dietrich, J.J., Baerwald, J.J., Brown, S.J., Su, Y. & Pfleger, B.F. "Combinatorial library design for improving isobutanol production in Saccharomyces cerevisiae." Frontiers in Bioengineering and Biotechnology 10, 1080024+ (2022). [DOI: 10.3389/fbioe.2022.1080024] DOI Google Scholar
2022	Hall, B.W., Bingman, C.A., Fox, B.G., Noguera, D.R. & Donohue, T.J. "A broad specificity β-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including γ-valerolactone." Journal of Biological Chemistry 299,1, 102782+ (2022). [DOI: 10.1016/j.jbc.2022.102782] DOI Google Scholar
2022	Lin, C.-Y., Geiselman, G.M., Liu, D., Magurudeniya, H.D., Rodriguez, A., Chen, Y.-C., Pidatala, V., Unda, F., Amer, B., Baidoo, E.E.K., et al. "Evaluation of engineered low-lignin poplar for conversion into advanced bioproducts." Biotechnology for Biofuels and Bioproducts 15,1, 145+ (2022). [DOI: 10.1186/s13068-022-02245-4] DOI Google Scholar
2022	McKinley, B.A., Thakran, M., Zemelis-Durfee, S., Huang, X., Brandizzi, F., Rooney, W.L., Mansfield, S.D. & Mullet, J.E. "Transcriptional regulation of the raffinose family oligosaccharides pathway in Sorghum bicolor reveals potential roles in leaf sucrose transport and stem sucrose accumulation." Frontiers in Plant Science 13, 1062264+ (2022). [DOI: 10.3389/fpls.2022.1062264] DOI Google Scholar
2022	Tilhou, N.W. & Casler, M.D. "Switchgrass sward establishment selection is consistent across multiple environments and fertilization levels." Grassland Research 1,4, 252-261+ (2022). [DOI: 10.1002/glr2.12035] DOI Google Scholar
2021	Abraha, M., Chen, J., Hamilton, S.K., Sciusco, P., Lei, C., Shirkey, G., Yuan, J. & Robertson, P. "Albedo-induced global warming impact of Conservation Reserve Program grasslands converted to annual and perennial bioenergy crops." Environmental Research Letters 16,8, 084059+ (2021). [DOI: 10.1088/1748-9326/ac1815] DOI Google Scholar
2021	Abu-Omar, M.M., Barta, K., Beckham, G.T., Luterbacher, J.S., Ralph, J., Rinaldi, R., Román-Leshkov, Y., Samec, J.S.M., Sels, B.F. & Wang, F. "Guidelines for performing lignin-first biorefining." Energy & Environmental Science 14,1, 262-292+ (2021). [DOI: 10.1039/D0EE02870C] DOI Google Scholar
2021	Alherech, M., Omolabake, S., Holland, C.M., Klinger, G.E., Hegg, E.L. & Stahl, S.S. "From lignin to valuable aromatic chemicals: lignin depolymerization and monomer separation via centrifugal partition chromatography." ACS Central Science 7,11, 1831–1837+ (2021). [DOI: 10.1021/acscentsci.1c00729] DOI Google Scholar
2021	Ando, D., Lu, F., Kim, H., Eugene, A., Tobimatsu, Y., Vanholme, R., Elder, T.J., Boerjan, W. & Ralph, J. "Incorporation of catechyl monomers into lignins: lignification from the non-phenolic end via Diels–Alder cycloaddition?" Green Chemistry 23,22, 8995-9013+ (2021). [DOI: 10.1039/D1GC03022A] DOI Google Scholar
2021	Angelos, E., Ko, D.K., Zemelis-Durfee, S. & Brandizzi, F. "Relevance of the unfolded protein response to spaceflight-induced transcriptional reprogramming in Arabidopsis." Astrobiology 21, 3+ (2021). [DOI: 10.1089/ast.2020.2313] DOI Google Scholar	Feedstocks
2021	Basso, B. "Precision conservation for a changing climate." Nature Food 2, 322-323+ (2021). [DOI: 10.1038/s43016-021-00283-z] DOI Google Scholar	Sustainability
2021	Basso, B., Jones, J.W., Antle, J., Martinez-Feria, R.A. & Verma, B. "Enabling circularity in grain production systems with novel technologies and policy." Agricultural Systems 193, 103244+ (2021). [DOI: 10.1016/j.agsy.2021.103244] DOI Google Scholar	Sustainability