Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2012	Miesel, J.R., Renz, M.J., Doll, J.E. & Jackson, R.D. "Effectiveness of weed management methods in establishment of switchgrass and a native species mixture for biofuels in Wisconsin." Biomass and Bioenergy 36, 121-131+ (2012). [DOI: 10.1016/j.biombioe.2011.10.018] DOI Google Scholar	Sustainability
2012	Mitchell, J.C., Rutkoski, T.J., Bannen, R.M. & Phillips, G.N. Combined computational and experimental approaches to sequence-based design of protein thermal stability Thermostable Proteins: Structural Stability and Design. 105-116+ (CRC Press, 2012). Google Scholar
2012	Muttoni, G., Johnson, J.M., Santoro, N., Rhiner, C.J., von Mogel, K.J.H., Kaeppler, S.M. & de Leon, N. "A high-throughput core sampling device for the evaluation of maize stalk composition." Biotechnology for Biofuels 5,1, 27+ (2012). [DOI: 10.1186/1754-6834-5-27] DOI Google Scholar	Feedstocks
2012	Nadakuduti, S.S., Pollard, M., Kosma, D.K., Allen, C., Ohlrogge, J.B. & Barry, C.S. "Pleiotropic phenotypes of the sticky peel mutant provide new insight into the role of CUTIN DEFICIENT2 in epidermal cell function in tomato." Plant Physiology 159,3, 945-960+ (2012). [DOI: 10.1104/pp.112.198374] DOI Google Scholar	Feedstocks
2012	Nikièma, P., Rothstein, D.E. & Miller, R.O. "Initial greenhouse gas emissions and nitrogen leaching losses associated with converting pastureland to short-rotation woody bioenergy crops in northern Michigan, USA." Biomass and Bioenergy 39, 413-426+ (2012). [DOI: 10.1016/j.biombioe.2012.01.037] DOI Google Scholar	Sustainability
2012	O'Neill, B.J., Gurbuz, E.I. & Dumesic, J.A. "Reaction kinetics studies of the conversions of formic acid and butyl formate over carbon-supported palladium in the liquid phase." Journal of Catalysis 290, 193-201+ (2012). [DOI: 10.1016/j.jcat.2012.03.014,] DOI Google Scholar	Conversion
2012	Pell, J., Hintze, A., Canino-Koning, R., Howe, A., Tiedje, J.M. & Brown, T. "Scaling metagenome sequence assembly with probabilistic de Bruijn graphs." Proceedings of the National Academy of Sciences of the United States of America 109,33, 13272-13277+ (2012). [DOI: 10.1073/pnas.1121464109] DOI Google Scholar	Sustainability
2012	Poskar, H., Huege, J., Krach, C., Franke, M., Shachar-Hill, Y. & Junker, B. "iMS2Flux - a high-throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysis." BMC Bioinformatics 13,1, 295+ (2012). [DOI: 10.1186/1471-2105-13-295] DOI Google Scholar	Feedstocks
2012	Ralph, J., Akiyama, T., Coleman, D.C. & Mansfield, S.D. "Effects on lignin structure of coumarate 3-hydroxylase downregulation in Poplar." BioEnergy Research 5,4, 1009-1019+ (2012). [DOI: 10.1007/s12155-012-9218-y] DOI Google Scholar	Feedstocks
2012	Reed, J.L. "Shrinking the metabolic solution space using experimental datasets." PLOS Computational Biology 8,8, (2012). [DOI: 10.1371/Journal.Pcbi.1002662] DOI Google Scholar	Conversion
2012	Robertson, B., Porter, C., Landis, D. & Schemske, D. "Agroenergy crops influence the diversity, biomass, and guild structure of terrestrial arthropod communities." BioEnergy Research 5, 179-188+ (2012). [DOI: 10.1007/s12155-011-9161-3] DOI Google Scholar	Sustainability
2012	Robertson, B.A., Rice, R.A., Sillet, T.S., Babcock, B.A., Landis, D.A., Ribic, C.A., Herkert, J.R., Fletcher, R.J., Fontaine, J.J. & Schemske, D.J. "Are agrofuels a threat or opportunity for grassland birds in the United States?" The Condor 114,4, 679-688+ (2012). [DOI: 10.1525/cond.2012.110136] DOI Google Scholar	Sustainability
2012	Rothamer, D.A. & Jennings, J.H. "Study of the knocking propensity of 2,5-dimethylfuran–gasoline and ethanol–gasoline blends." Fuel 98, 203-212+ (2012). [DOI: 10.1016/j.fuel.2012.03.049] DOI Google Scholar	Sustainability
2012	Ruiz-May, E., Kim, S.-J., Brandizzi, F. & Rose, J.K. "The secreted plant N-glycoproteome and associated secretory pathways." Frontiers in Plant Science 3, 117+ (2012). [DOI: 10.3389/fpls.2012.00117] DOI Google Scholar	Feedstocks
2012	Sanford, G.R., Posner, J.L., Jackson, R.D., Kucharik, C.J., Hedtcke, J.L. & Lin, T.-L. "Soil carbon lost from Mollisols of the North Central U.S.A. with 20 years of agricultural best management practices." Agriculture, Ecosystems and Environment 162, 68-76+ (2012). [DOI: 10.1016/j.agee.2012.08.011] DOI Google Scholar	Sustainability
2012	Schwalbach, M.S., Keating, D.H., Tremaine, M., Marner, W.D., Zhang, Y.H., Bothfeld, W.H., Higbee, A.J., Grass, J.A., Cotten, C., Reed, J.L., et al. "Complex physiology and compound stress responses during fermentation of alkali-pretreated corn stover hydrolysate by an Escherichia coli ethanologen." Applied and Environmental Microbiology 78,9, 3442-57+ (2012). [DOI: 10.1128/AEM.07329-11] DOI Google Scholar	Deconstruction, Conversion
2012	Sekhon, R.S., Childs, K.L., Santoro, N., Foster, C.E., Buell, R., de Leon, N. & Kaeppler, S.M. "Transcriptional and metabolic analysis of senescence induced by preventing pollination in maize." Plant Physiology 159, 1730-1744+ (2012). [DOI: 10.1104/pp.112.199224] DOI Google Scholar	Feedstocks
2012	Sen, M., Alonso, D.M., Wettstein, S.G., Gurbuz, E.I., Henao, C.A., Dumesic, J.A. & Maravelias, C.T. "A sulfuric acid management strategy for the production of liquid hydrocarbon fuels via catalytic conversion of biomass-derived levulinic acid." Energy and Environmental Science 5,12, 9690-97+ (2012). [DOI: 10.1039/C2EE22526C] DOI Google Scholar	Deconstruction, Conversion
2012	Sen, M., Gurbuz, E.I., Wettstein, S.G., Alonso, D.M., Dumesic, J.A. & Maravelias, C.T. "Production of butene oligomers as transportation fuels using butene for esterification of levulinic acid from lignocellulosic biomass: process synthesis and technoeconomic evaluation." Green Chemistry 14,12, 3289-94+ (2012). [DOI: 10.1039/C2GC35881F] DOI Google Scholar	Deconstruction, Conversion
2012	Sen, M.S., Henao, C.A., Braden, D.J., Dumesic, J.A. & Maravelias, C.T. "Catalytic conversion of lignocellulosic biomass to fuels: process development and technoeconomic evaluation." Chemical Engineering Science 67,1, 57-67+ (2012). [DOI: 10.1016/j.ces.2011.07.022] DOI Google Scholar	Conversion, Sustainability
2012	Sen, S.M., Binder, J.B., Raines, R.T. & Maravelias, C.T. "Conversion of biomass to sugars via ionic liquid hydrolysis: process synthesis and economic evaluation." Biofuels, Bioproducts and Biorefining 6,4, 444-452+ (2012). [DOI: 10.1002/bbb.1336] DOI Google Scholar	Sustainability
2012	Nair, S.S., Kang, S., Zhang, X., Miguez, F.E., Izaurralde, C., Post, W.M., Dietze, M.C., Lynd, L.R. & Wullschleger, S.D. "Bioenergy crop models: descriptions, data requirements, and future challenges." Global Change Biology – Bioenergy 4,6, 620-633+ (2012). [DOI: 10.1111/j.1757-1707.2012.01166.x] DOI Google Scholar	Sustainability
2012	Syswerda, S.P., Basso, B., Hamilton, S.K., Tausig, J.B. & Robertson, P. "Long-term nitrate loss along an agricultural intensity gradient in the Upper Midwest USA." Agriculture, Ecosystems & Environment 149,March 2012, 10-19+ (2012). [DOI: 10.1016/j.agee.2011.12.007] DOI Google Scholar	Sustainability
2012	Thelen, K.D., Gao, J., Hoben, J., Qian, L., Saffron, C. & Withers, K. "A spreadsheet-based model for teaching the agronomic, economic, and environmental aspects of bioenergy cropping systems." Computers and Electronics in Agriculture 85, 157-163+ (2012). [DOI: 10.1016/j.compag.2012.04.010] DOI Google Scholar	Deconstruction, Sustainability
2012	Tjellstrom, H., Yang, Z., Allen, D.K. & Ohlrogge, J.B. "Rapid kinetic labeling of Arabidopsis cell suspension cultures: implications for models of lipid export from plastids." Plant Physiology 158,2, 601-11+ (2012). [DOI: 10.1104/pp.111.186122] DOI Google Scholar	Feedstocks