Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2013
Paper, J.M., Scott-Craig, J.S., Cavalier, D.M., Faik, A., Wiemels, R.E., Borrusch, M.S., Bongers, M. & Walton, J.D. "α-Fucosidases with different substrate specificities from two species of Fusarium." Applied Microbiology and Biotechnology 97,12, 5371-5380+ (2013). [DOI: 10.1007/s00253-012-4423-3]
Deconstruction
2013
Robertson, B.A., Landis, D.A., Sillett, S., Loomis, E.R. & Rice, R.A. "Perennial agroenergy feedstocks as en route habitat for spring migratory birds." BioEnergy Research 6,1, 311-320+ (2013). [DOI: 10.1007/s12155-012-9258-3]
Sustainability
2013
Robertson, P., Bruulsema, T.W., Gehl, R., Kanter, D., Mauzerall, D., Rotz, A. & Williams, C. "Nitrogen-climate interactions in US agriculture." Biogeochemistry 114, 41-70+ (2013). [DOI: 10.1007/s10533-012-9802-4]
Sustainability
2013
Wagner, A., Tobimatsu, Y., Goeminne, G., Phillips, L., Flint, H., Steward, D., Torr, K., Donaldson, L., Boerjan, W. & Ralph, J. "Suppression of CCR impacts metabolite profile and cell wall composition in Pinus radiata tracheary elements." Plant and Molecular Biology 81,1-2, 105-17+ (2013). [DOI: 10.1007/s11103-012-9985-z]
Feedstocks
2013
Wang, Y., Mortimer, J.C., Davis, J., Dupree, P. & Keegstra, K. "Identification of an additional protein involved in mannan biosynthesis." The Plant Journal 73,1, 105-117+ (2013). [DOI: 10.1111/tpj.12019]
Feedstocks
2013
Yelle, D.J., Kaparaju, P., Hunt, C.G., Hirth, K., Kim, H., Ralph, J. & Felby, C. "Two-dimensional NMR evidence for cleavage of lignin and xylan substituents in wheat straw through hydrothermal pretreatment and enzymatic hydrolysis." BioEnergy Research 6,1, 211-221+ (2013). [DOI: 10.1007/s12155-012-9247-6]
Feedstocks, Deconstruction
2013
Adams, A.S., Aylward, F.O., Adams, S.M., Erbilgin, N., Aukema, B., Currie, C.R., Suen, G. & Raffa, K.F. "Mountain pine beetles colonizing historical and naïve host trees are associated with a bacterial community highly enriched in genes contributing to terpene metabolism." Applied and Environmental Microbiology 79,11, 3468-3475+ (2013). [DOI: 10.1128/​AEM.00068-13]
Deconstruction
2013
Agnew, D.E. & Pfleger, B.F. "Synthetic biology strategies for synthesizing polyhydroxyalkanoates from unrelated carbon sources." Chemical Engineering Science 103, 58-67+ (2013). [DOI: 10.1016/j.ces.2012.12.023]
Conversion
2013
Alonso, D.M., Wettstein, S.G. & Dumesic, J.A. "Gamma-valerolactone, a sustainable platform molecule derived from lignocellulosic biomass." Green Chemistry 15,3, 584+ (2013). [DOI: 10.1039/c3gc37065h]
Conversion
2013
Asbjornsen, H., Hernandez-Santana, V., Liebman, M., Bayala, J., Chen, J., Helmers, M., Ong, C.K. & Schulte, L.A. "Targeting perennial vegetation in agricultural landscapes for enhancing ecosystem services." Renewable Agriculture and Food Systems 29,2, 101-125+ (2013). [DOI: 10.1017/S1742170512000385]
Sustainability
2013
Aylward, F.O., Burnum, K.E., Tringe, S.G., Teiling, C., Tremmel, D.M., Moeller, J., Scott, J.J., Barry, K.W., Nicora, C.D., Piehowski, P.D., et al. "Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens." Applied and Environmental Microbiology 79,12, 3770-3778+ (2013). [DOI: 10.1128/AEM.03833-12]
Deconstruction
2013
Aylward, F.O., McDonald, B.R., Adams, S.M., Valenzuela, A., Schmidt, R.A., Goodwin, L.A., Woyke, T., Currie, C.R., Suen, G. & Poulsen, M. "Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities." Applied and Environmental Microbiology 79,12, 3724-3733+ (2013). [DOI: 10.1128/AEM.00518-13]
Deconstruction
2013
Aylward, F.O., Tremmel, D.M., Bruce, D.C., Chain, P., Chen, A., Davenport, K.W., Detter, C., Han, C.S., Han, J., Huntemann, M., et al. "Complete genome of Enterobacteriaceae bacterium strain FGI 57, a strain associated with leaf-cutter ant fungus gardens." Genome Announcements 1,1, (2013). [DOI: 10.1128/genomeA.00238-12]
Deconstruction
2013
Aylward, F.O., Tremmel, D.M., Starrett, G.J., Bruce, D.C., Chain, P., Chen, A., Davenport, K.W., Detter, C., Han, C.S., Han, J., et al. "Complete genome of Serratia sp. strain FGI 94, a strain associated with leaf-cutter ant fungus gardens." Genome Announcements 1,2, (2013). [DOI: 10.1128/genomeA.00239-12]
Deconstruction
2013
Balan, V., Chiaramonti, D. & Kumar, S. "Review of US and EU initiatives towards development, demonstration and commercialization of lignocellulosic biofuels." Biofuels, Bioproducts and Biorefining 7,6, 732-759+ (2013). [DOI: 10.1002/bbb.1436]
Deconstruction
2013
Balan, V., Jin, M., Culbertson, A. & Uppugundla, N. "The saccharification step: Trichoderma reesei cellulase hyper producer strains." in Lignocellulose Conversion: Enzymatic and Microbial Tools for Bioethanol Production. 65-92+ (Springer, 2013). [DOI: 10.1007/978-3-642-37861-4]
Deconstruction
2013
Bals, B.D., Gunawan, C., Moore, J., Teymouri, F. & Dale, B.E. "Enzymatic hydrolysis of pelletized AFEX™-treated corn stover at high solid loadings." Biotechnology and Bioengineering 111,2, 264-271+ (2013). [DOI: 10.1002/bit.25022/abstract]
Deconstruction
2013
Bandaru, V., Izaurralde, C., Manowitz, D., Link, R., Zhang, X. & Post, W.M. "Soil carbon change and net energy associated with biofuel production on marginal lands: a regional modeling perspective." Journal of Environmental Quality 42,6, 1802-1814+ (2013). [DOI: 10.2134/jeq2013.05.0171]
Sustainability
2013
Bates, P.D., Stymne, S. & Ohlrogge, J. "Biochemical pathways in seed oil synthesis." Current Opinion in Plant Biology 16, 1-7+ (2013). [DOI: 10.1016/j.pbi.2013.02.015]
Feedstocks
2013
Beissinger, T.M., Hirsch, C.N., Sekhon, R.S., Foerster, J.M., Johnson, J.M., Muttoni, G., Vaillancourt, B., Buell, R., Kaeppler, S.M. & de Leon, N. "Marker density and read-depth for genotyping populations using genotyping-by-sequencing." Genetics 193,4, 1073-1081+ (2013). [DOI: 10.1534/genetics.112.147710]
Feedstocks
2013
Bianchetti, C.M., Brumm, P., Smith, R.W., Dyer, K., Hura, G.L., Rutkoski, T.J. & Phillips, G.N. "Structure, dynamics, and specificity of endoglucanase D from Clostridium cellulovorans." Journal of Molecular Biology 425,22, 4267-4285+ (2013). [DOI: 10.1016/j.jmb.2013.05.030]
Deconstruction
2013
Bianchetti, C.M., Harmann, C.H., Takasuka, T.E., Hura, G.L., Dyer, K. & Fox, B.G. "Fusion of dioxygenase and lignin-binding domains in a novel secreted enzyme from cellulolytic Streptomyces sp. SirexAA-E." Journal of Biological Chemistry 288,25, 18574-18587+ (2013). [DOI: 10.1074/jbc.M113.475848]
Deconstruction
2013
Brumm, P.J. "Bacterial genomes: what they teach us about cellulose degradation." Biofuels 4,6, 669-681+ (2013). [DOI: 10.4155/bfs.13.44]
Deconstruction
2013
Caes, B.R., Van Oosbree, T.R., Lu, F., Ralph, J., Maravelias, C.T. & Raines, R.T. "Simulated moving bed chromatography: separation and recovery of sugars and ionic liquid from biomass hydrolysates." ChemSusChem 6, 2083-2089+ (2013). [DOI: 10.1093/bioinformatics/btt357]
Feedstocks, Deconstruction, Conversion
2013
Chandrasekaran, A., Deng, K., Koh, C.-Y., Takasuka, T.E., Bergeman, L.F., Fox, B.G., Adams, P.D. & Singh, A.K. "A universal flow cytometry assay for screening carbohydrate-active enzymes using glycan microspheres." Chemical Communications 49, 5441-5443+ (2013). [DOI: 10.1039/C3CC39155H]
Deconstruction