Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2023	Li, H., Kang, X., Yang, M., Kasseney, B.D., Zhou, X., Liang, S., Zhang, X., Wen, J.-L., Yu, B., Liu, N., et al. "Molecular insights into the evolution of woody plant decay in the gut of termites." Science Advances 9,21, (2023). [DOI: 10.1126/sciadv.adg1258] DOI Google Scholar
2023	Li, X., Chou, M.-Y., Bonito, G.M. & Last, R.L. "Anti-fungal bioactive terpenoids in the bioenergy crop switchgrass (Panicum virgatum) may contribute to ecotype-specific microbiome composition." Communications Biology 6,1, 917+ (2023). [DOI: 10.1038/s42003-023-05290-3] DOI Google Scholar
2023	Liu, L., Ansari, R.U., Vang-Smith, M., Hittinger, C.T. & Sato, T.K. "A role for ion homeostasis in yeast ionic liquid tolerance." microPublication Biology 2023, 10.17912/micropub.biology.000718+ (2023). [DOI: 10.17912/micropub.biology.000718] DOI Google Scholar
2023	Lucas, M., Gil, J., Robertson, G.P., Ostrom, N.E. & Kravchenko, A. "Changes in soil pore structure generated by the root systems of maize, sorghum and switchgrass affect in situ N2O emissions and bacterial denitrification." Biology and Fertility of Soils DOI: 10.1007/s00374-023-01761-1, (2023). [DOI: 10.1007/s00374-023-01761-1] DOI Google Scholar
2023	Lucas, M., Santiago, J.P., Chen, J., Guber, A. & Kravchenko, A. "The soil pore structure encountered by roots affects plant-derived carbon inputs and fate." New Phytologist 240,2, 515-528+ (2023). [DOI: 10.1111/nph.19159] DOI Google Scholar
2023	Marshall, B., Amritkar, K., Wolfe, M., Kacar, B. & Landick, R. "Evolutionary flexibility and rigidity in the bacterial methylerythritol phosphate (MEP) pathway." Frontiers in Microbiology 14, 1286626+ (2023). [DOI: 10.3389/fmicb.2023.1286626] DOI Google Scholar
2023	Mechan-Llontop, M.E., Mullet, J. & Shade, A. "Phyllosphere exudates select for distinct microbiome members in sorghum epicuticular wax and aerial root mucilage." Phytobiomes Journal 7,2, 184-197+ (2023). [DOI: 10.1094/pbiomes-08-22-0046-fi] DOI Google Scholar	Sustainability
2023	Mechan-Llontop, M.E., Mullet, J. & Shade, A. "Genome-sequenced bacterial collection from sorghum aerial root mucilage." Microbiology Resource Announcements 12,12, (2023). [DOI: 10.1128/MRA.00468-23] DOI Google Scholar
2023	Mechan-Llontop, M.E., Mullet, J. & Shade, A. "Genome-sequenced bacterial collection from sorghum epicuticular wax." Microbiology Resource Announcements 12,12, (2023). [DOI: 10.1128/MRA.00484-23] DOI Google Scholar
2023	Muro-Villanueva, F., Pysh, L.D., Kim, H., Bouse, T., Ralph, J., Luo, Z., Cooper, B.R., Jannasch, A.S., Zhang, Z., Gu, C., et al. "Pinoresinol rescues developmental phenotypes of Arabidopsis phenylpropanoid mutants overexpressing FERULATE 5-HYDROXYLASE." Proceedings of the National Academy of Sciences of the United States of America 120,31, (2023). [DOI: 10.1073/pnas.2216543120] DOI Google Scholar
2023	Myers, K.S., Ingle, A.T., Walters, K.A., Fortney, N.W., Scarborough, M.J., Donohue, T.J. & Noguera, D.R. "Comparison of metagenomes from fermentation of various agroindustrial residues suggests a common model of community organization." Frontiers in Bioengineering and Biotechnology 11, 1197175+ (2023). [DOI: 10.3389/fbioe.2023.1197175] DOI Google Scholar
2023	Nalabothu, R.L., Fisher, K.J., LaBella, A.L., Meyer, T.A., Opulente, D.A., Wolters, J.F., Rokas, A. & Hittinger, C.T. "Codon optimization improves the prediction of xylose metabolism from gene content in budding yeasts." Molecular Biology and Evolution 40,6, (2023). [DOI: 10.1093/molbev/msad111] DOI Google Scholar
2023	O'Banion, B.S., Jones, P., Demetros, A.A., Kelley, B.R., Knoor, L.H., Wagner, A.S., Chen, J.-G., Muchero, W., Reynolds, T.B., Jacobson, D., et al. "Plant myo-inositol transport influences bacterial colonization phenotypes." Current Biology 33,15, 3111-3124+ (2023). [DOI: 10.1016/j.cub.2023.06.057] DOI Google Scholar
2023	Opulente, D.A., Langdon, Q.K., Jarzyna, M., Buh, K.V., Haase, M.A.B., Groenewald, M. & Hittinger, C.T. "Taxogenomic analysis of a novel yeast species isolated from soil, Pichia galeolata sp. nov." Yeast 40,12, 608-615+ (2023). [DOI: 10.1002/yea.3905] DOI Google Scholar
2023	Parra, M., Libkind, D., Hittinger, C.T., Alvarez, L. & Bellora, N. "Assembly and comparative genome analysis of a Patagonian Aureobasidium pullulans isolate reveals unexpected intraspecific variation." Yeast 40,5-6, 197-213+ (2023). [DOI: 10.1002/yea.3853] DOI Google Scholar
2023	de Lima, A.E.P., Wrobel, R.L., Paul, B., Anthony, L.C., Sato, T.K., Zhang, Y., Hittinger, C.T. & Maravelias, C.T. "High yield co-production of isobutanol and ethanol from switchgrass: experiments, and process synthesis and analysis." Sustainable Energy & Fuels 7,14, 3266-3275+ (2023). [DOI: 10.1039/D2SE01741E] DOI Google Scholar
2023	Peng, X., Tong, B., Lee, J., Wang, K., Yu, X., Huang, X., Wen, J., Makarem, M., Pang, H., Hinjan, S., et al. "Overexpression of a gibberellin 20-oxidase gene in poplar xylem led to an increase in the size of nanocellulose fibrils and improved paper properties." Carbohydrate Polymers 314, 120959+ (2023). [DOI: 10.1016/j.carbpol.2023.120959] DOI Google Scholar
2023	Peris, D., Ubbelohde, E.J., Kuang, M.C., Kominek, J., Langdon, Q.K., Adams, M., Koshalek, J.A., Hulfachor, A.B., Opulente, D.A., Hall, D.J., et al. "Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces." Nature Communications 14,1, 690+ (2023). [DOI: 10.1038/s41467-023-36139-2] DOI Google Scholar	Conversion
2023	Perry, S., Falvo, G., Mosier, S. & Robertson, P. "Long-term changes in soil carbon and nitrogen fractions in switchgrass, native grasses, and no-till corn bioenergy production systems." Soil Science Society of America Journal 87,6, 1365-1375+ (2023). [DOI: 10.1002/saj2.20575] DOI Google Scholar
2023	Petit, S. & Landis, D.A. "Landscape-scale management for biodiversity and ecosystem services." Agriculture, Ecosystems & Environment 347, 108370+ (2023). [DOI: 10.1016/j.agee.2023.108370] DOI Google Scholar
2023	Pett-Ridge, J., Ammar, H.Z., Aui, A., Ashton, M., Baker, S.E., Basso, B., Bradford, M., Bump, A.P., Busch, I., Calzado, E.R., et al. "Roads to Removal: Options for Carbon Dioxide Removal in the United States, December 2023, Lawrence Livermore National Laboratory, LLNL-TR-852901." (2023). Google Scholar
2023	Pfleger, B.F. & Takors, R. "Recent progress in the synthesis of advanced biofuel and bioproducts." Current Opinion in Biotechnology 80, 102913+ (2023). [DOI: 10.1016/j.copbio.2023.102913] DOI Google Scholar
2023	Ralph, J., Kim, H., Lu, F., Smith, R.A., Karlen, S.D., Yoshioka, K., Eugene, A., Liu, S., Sener, C., Ando, D., et al. "Lignins and lignification: new developments and emerging concepts." in Recent Advances in Polyphenol Research. vol. 8 1-50+ (Wiley-Blackwell, 2023). [DOI: 10.1002/9781119844792.ch1] DOI Google Scholar
2023	Raza, S., Miller, M., Hamberger, B. & Vermaas, J.V. "Plant terpenoid permeability through biological membranes explored via molecular simulations." The Journal of Physical Chemistry B 127,5, 1144-1157+ (2023). [DOI: 10.1021/acs.jpcb.2c07209] DOI Google Scholar
2023	Rivier, A.J., Myers, K.S., Garcia, A.K., Sobol, M.S. & Kacar, B. "Regulatory response to a hybrid ancestral nitrogenase in Azotobacter vinelandii." Microbiology Spectrum 11,5, (2023). [DOI: 10.1128/spectrum.02815-23] DOI Google Scholar