Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2024	Pontes, A., Paraiso, F., Liu, Y.-C., Limtong, S., Jindamorakot, S., Jespersen, L., Goncalves, C., Rosa, C.A., Tsai, I.J., Rokas, A., et al. "Tracking alternative versions of the galactose gene network in the genus Saccharomyces and their expansion after domestication." iScience 27,2, 108987+ (2024). [DOI: 10.1016/j.isci.2024.108987] DOI Google Scholar
2024	Rapp, J.T., Bremer, B.J. & Romero, P.A. "Self-driving laboratories to autonomously navigate the protein fitness landscape." Nature Chemical Engineering 1, 97-107+ (2024). [DOI: 10.1038/s44286-023-00002-4] DOI Google Scholar
2024	Vazquez, J.R., Trujillo, E., Williams, J., She, F., Getahun, F., Callaghan, M.M., Coon, J.J. & Amador-Noguez, D. "Lipid membrane remodeling and metabolic response during isobutanol and ethanol exposure in Zymomonas mobilis." Biotechnology for Biofuels and Bioproducts 17,1, 14+ (2024). [DOI: 10.1186/s13068-023-02450-9] DOI Google Scholar
2024	Stewart, R.D., Myers, K.S., Amstadt, C., Seib, M., McMahon, K.D. & Noguera, D.R. "Refinement of the "Candidatus Accumulibacter" genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration." mSystems 9,3, (2024). [DOI: 10.1128/msystems.01188-23] DOI Google Scholar
2024	Sun, L., David, K.T., Wolters, J.F., Karlen, S.D., Goncalves, C., Opulente, D.A., LaBella, A.L., Groenewald, M., Zhou, X., Shen, X.-X., et al. "Functional and evolutionary integration of a fungal gene with a bacterial operon." Molecular Biology and Evolution DOI:10.1093/molbev/msae045, (2024). [DOI: 10.1093/molbev/msae045] DOI Google Scholar
2024	Taifan, G.S.P. & Maravelias, C.T. "Multi-technology separation system synthesis." Computers & Chemical Engineering 183, 108616+ (2024). [DOI: 10.1016/j.compchemeng.2024.108616] DOI Google Scholar
2024	Tejera-Nieves, M., Seong, D.Y., Reist, L. & Walker, B.J. "The Dynamic Assimilation Technique measures photosynthetic CO2 response curves with similar fidelity as steady-state approaches in half the time." Journal of Experimental Biology DOI: 10.1093/jxb/erae057, (2024). [DOI: 10.1093/jxb/erae057] DOI Google Scholar
2024	Vilbert, A.C., Kontur, W.S., Gille, D., Noguera, D.R. & Donohue, T.J. "Engineering Novosphingobium aromaticivorans to produce cis,cis-muconic acid from biomass aromatics." Applied and Environmental Microbiology 90,1, (2024). [DOI: 10.1128/aem.01660-23] DOI Google Scholar
2024	Xie, Y., Spawn-Lee, S.A., Radeloff, V.C., Yin, H., Robertson, P. & Lark, T.J. "Cropland abandonment between 1986 and 2018 across the United States: spatiotemporal patterns and current land uses." Environmental Research Letters 19, 044009+ (2024). [DOI: 10.1088/1748-9326/ad2d12] DOI Google Scholar
2024	Yoshioka, K., Kim, H., Lu, F., De Ridder, N., Vanholme, R., Kajita, S., Boerjan, W. & Ralph, J. "Hydroxycinnamaldehyde-derived benzofuran components in lignins." Plant Physiology 194,3, 1370-1382+ (2024). [DOI: 10.1093/plphys/kiad514] DOI Google Scholar
2024	Zou, H., Chen, J., Li, X., Abraha, M., Zhao, X. & Tang, J. "Modeling net ecosystem exchange of CO2 with gated recurrent unit neural networks." Agricultural and Forest Meteorology 350, 109985+ (2024). [DOI: 10.1016/j.agrformet.2024.109985] DOI Google Scholar
2023	Casler, M.D., Lee, D.K., Mitchell, R.B., Moore, K.J., Adler, P.R., Sulc, M., Johnson, K.D., Kallenbach, R.L., Boe, A.R., Mathison, R.D., et al. "Biomass quality responses to selection for increased biomass yield in perennial energy grasses." BioEnergy Research 16,2, 877–885+ (2023). [DOI: 10.1007/s12155-022-10513-2] DOI Google Scholar	Sustainability
2023	Dong, X., Mayes, H.B., Morreel, K., Katahira, R., Li, Y., Ralph, J., Black, B.A. & Beckham, G.T. "Energy-resolved mass spectrometry as a tool for identification of lignin depolymerization products." ChemSusChem 16,1, (2023). [DOI: 10.1002/cssc.202201441] DOI Google Scholar
2023	Hellinger, J., Kim, H., Ralph, J. & Karlen, S.D. "p-Coumaroylation of lignin occurs outside of commelinid monocots in the eudicot genus Morus (mulberry)." Plant Physiology 191,2, 854–861+ (2023). [DOI: 10.1093/plphys/kiac485] DOI Google Scholar
2023	Ko, D.K. & Brandizzi, F. "Coexpression network construction and visualization from transcriptomes underlying ER stress responses." in Plant Proteostasis. Methods in Molecular Biology. vol. 2581 385-401+ (Humana, 2023). [DOI: 10.1007/978-1-0716-2784-6_27] DOI Google Scholar
2023	Mottiar, Y., Karlen, S.D., Goacher, R.E., Ralph, J. & Mansfield, S.D. "Metabolic engineering of p-hydroxybenzoate in poplar lignin." Plant Biotechnology Journal 21,1, 176-188+ (2023). [DOI: 10.1111/pbi.13935] DOI Google Scholar
2023	Mottiar, Y., Smith, R.A., Karlen, S.D., Ralph, J. & Mansfield, S.D. "Evolution of p-coumaroylated lignin in eudicots provides new tools for cell wall engineering." New Phytologist 237,1, 251-264+ (2023). [DOI: 10.1111/nph.18518] DOI Google Scholar
2023	Roney, H.E. & Walker, B.J. "Photon to plate: a holistic view of photosynthetic and anthropogenic energy fluxes." Food and Energy Security 12,1, (2023). [DOI: 10.1002/fes3.348] DOI Google Scholar
2023	Alberge, F., Lakey, B.D., Schaub, R.E., Dohnalkova, A.C., Lemmer, K.C., Dillard, J.P., Noguera, D.R. & Donohue, T.J. "A previously uncharacterized divisome-associated lipoprotein, DalA, is needed for normal cell division in Rhodobacterales." mBio 14,4, (2023). [DOI: 10.1128/mbio.01203-23] DOI Google Scholar
2023	Barros, K.O., Alvarenga, F.B.M., Magni, G., Souza, G.F.L., Abegg, M.A., Palladino, F., da Silva, S.S., Rodrigues, R.C.L.B., Sato, T.K., Hittinger, C.T., et al. "The Brazilian Amazonian rainforest harbors a high diversity of yeasts associated with rotting wood, including many candidates for new yeast species." Yeast 40,2, 84-101+ (2023). [DOI: 10.1002/yea.3837] DOI Google Scholar
2023	Basyal, B. & Walker, B.J. "Arbuscular mycorrhizal fungi enhance yield and photosynthesis of switchgrass (Panicum virgatum L.) under extreme drought and alters the biomass composition of the host plant." Biomass and Bioenergy 177, 106936+ (2023). [DOI: 10.1016/j.biombioe.2023.106936] DOI Google Scholar
2023	Bell-Dereske, L.P., Benucci, G.M.N., da Costa, P.B., Bonito, G., Friesen, M.L., Tiemann, L.K. & Evans, S.E. "Regional biogeography versus intra-annual dynamics of the root and soil microbiome." Environmental Microbiome 18,1, 50+ (2023). [DOI: 10.1186/s40793-023-00504-x] DOI Google Scholar	Sustainability
2023	Benucci, G.M.N., Toosi, E.R., Yang, F., Marsh, T.L., Bonito, G.M. & Kravchenko, A. "The microbiome structure of decomposing plant leaves in soil depends on plant species, soil pore sizes, and soil moisture content." Frontiers in Microbiology 14, 1172862+ (2023). [DOI: 10.3389/fmicb.2023.1172862] DOI Google Scholar
2023	Bhandari, D.D., Ko, D.K., Kim, S.-J., Nomura, K., He, S.Y. & Brandizzi, F. "Defense against phytopathogens relies on efficient antimicrobial protein secretion mediated by the microtubule-binding protein TGNap1." Nature Communications 14,1, 6357+ (2023). [DOI: 10.1038/s41467-023-41807-4] DOI Google Scholar
2023	Bonde, N.J., Wood, E.A., Myers, K.S., Place, M., Keck, J.L. & Cox, M.M. "Identification of recG genetic interactions in Escherichia coli by transposon sequencing." Journal of Bacteriology 205,12, (2023). [DOI: 10.1128/jb.00184-23] DOI Google Scholar