Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2014	Green, A.R., Lewis, K.M., Barr, J.T., Jones, J.P., Lu, F., Ralph, J., Vermerris, W., Sattler, S.E. & Kang, C.H. "Determination of the structure and catalytic mechanism of Sorghum bicolor caffeic acid O-methyltransferase and the structural impact of three brown midrib12 mutations." Plant Physiology 165, 1440-1456+ (2014). [DOI: 10.1104/pp.114.241729] DOI Google Scholar	Feedstocks
2014	Greenler, J., Nye, L. & Tangen, T. "Cellulose breakdown." The Science Teacher 81, 3-11+ (2014). Google Scholar
2014	Haft, R.J.F., Keating, D.H., Schwaegler, T., Schwalbach, M.S., Vinokur, J., Tremaine, M., Peters, J.M., Kotlajich, M.V., Pohlmann, E.L., Ong, I.M., et al. "Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria." Proceedings of the National Academy of Sciences of the United States of America 111,25, (2014). [DOI: 10.1073/pnas.1401853111] DOI Google Scholar	Conversion
2014	Haitjema, C.H., Boock, J.T., Natarajan, A., Dominguez, M.A., Gardner, J.G., Keating, D.H., Withers, S.T. & DeLisa, M.P. "Universal genetic assay for engineering extracellular protein expression." ACS Synthetic Biology 3,2, 74-82+ (2014). [DOI: 10.1021/sb400142b] DOI Google Scholar	Conversion
2014	Han, J., Sen, M., Alonso, D.M., Dumesic, J.A. & Maravelias, C.T. "A strategy for the simultaneous catalytic conversion of hemicellulose and cellulose from lignocellulosic biomass to liquid transportation fuels." Green Chemistry 16,2, 653-661+ (2014). [DOI: 10.1039/C3GC41511B] DOI Google Scholar	Conversion
2014	He, J., Pingali, S.V., Chundawat, S.P.S., Pack, A., Jones, D., Langan, P., Davison, B.H., Urban, V., Evans, B. & O’Neill, H. "Controlled incorporation of deuterium into bacterial cellulose." Cellulose 21,2, 927-936+ (2014). [DOI: 10.1007/s10570-013-0067-4] DOI Google Scholar
2014	Hedtcke, J.L., Sanford, G.R., Hadley, K.E. & Thelen, K.D. "Maximizing land use during switchgrass establishment in the North Central United States." Agronomy Journal 106,2, 596-604+ (2014). [DOI: 10.2134/agronj2013.0410] DOI Google Scholar	Sustainability
2014	Held, M.A., Danhof, L. & Brandizzi, F. "Identifying protein-protein interactions in Arabidopsis by co-immunoprecipitation of GFP-tagged proteins and proteomic detection." in Fluorescent Proteins. (Humana Press, 2014). Google Scholar	Feedstocks
2014	Herzberger, A.J., Duncan, D.S. & Jackson, R.D. "Bouncing back: plant-associated soil microbes respond rapidly to prairie establishment." PLOS ONE 9,12, (2014). [DOI: 10.1371/journal.pone.0115775] DOI Google Scholar	Sustainability
2014	Hirsch, C.D., Evans, J., Buell, R. & Hirsch, C.N. "Reduced representation approaches to interrogate genome diversity in large, repetitive plant genomes." Briefings in Functional Genomics 13,4, 257-267+ (2014). [DOI: 10.1093/bfgp/elt051] DOI Google Scholar	Feedstocks
2014	Hirsch, C.N., Foerster, J.M., Johnson, J.M., Sekhon, R.S., Muttoni, G., Vaillancourt, B., Peñagaricano, F., Lindquist, E., Pedraza, M.A., Barry, K., et al. "Insights into the maize pan-genome and pan-transcriptome." The Plant Cell 26,1, 121-135+ (2014). [DOI: 10.1105/tpc.113.119982] DOI Google Scholar	Feedstocks
2014	Howe, A.C., Jansson, J.K., Malfatti, S.A., Tringe, S.G., Tiedje, J.M. & Brown, T. "Tackling soil diversity with the assembly of large, complex metagenomes." Proceedings of the National Academy of Sciences of the United States of America 111,13, 4904-4909+ (2014). [DOI: 10.1073/pnas.1402564111] DOI Google Scholar	Sustainability
2014	Huang, E.L., Aylward, F.O., Kim, Y.-M., Webb-Robertson, B.-J.M., Nicora, C.D., Hu, Z., Metz, T.O., Lipton, M.S., Smith, R.D., Currie, C.R., et al. "The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation." Environmental Microbiology Reports 6,4, 389-395+ (2014). [DOI: 10.1111/1758-2229.12163] DOI Google Scholar	Deconstruction
2014	Humpula, J.F., Uppugundla, N., Vismeh, R., Sousa, L., Chundawat, S.P.S., Jones, D., Balan, V., Dale, B.E. & Cheh, A.M. "Probing the nature of AFEX-pretreated corn stover derived decomposition products that inhibit cellulase activity." Bioresource Technology 152, 38-45+ (2014). [DOI: 10.1016/j.biortech.2013.10.082] DOI Google Scholar	Deconstruction
2014	Imam, S., Fitzgerald, C.M., Cook, E.M., Donohue, T.J. & Noguera, D.R. "Quantifying the effects of light intensity on bioproduction and maintenance energy during photosynthetic growth of Rhodobacter sphaeroides." Photosynthesis Research 123, 167-182+ (2014). [DOI: 10.1007/s11120-014-0061-1] DOI Google Scholar	Conversion
2014	Imam, S., Noguera, D.R. & Donohue, T.J. "Global analysis of photosynthesis transcriptional regulatory networks." PLOS Genetics 10,12, (2014). [DOI: 10.1371/journal.pgen.1004837] DOI Google Scholar	Conversion
2014	Jabbour, D., Angelos, E.R., Mukhopadhyay, A., Womboldt, A., Borrusch, M.S. & Walton, J.D. "Factors contributing to recalcitrance of herbaceous dicotyledons (forbs) to enzymatic deconstruction." Biotechnology for Biofuels 7,1, 52+ (2014). [DOI: 10.1186/1754-6834-7-52] DOI Google Scholar	Deconstruction
2014	Jensen, J.K., Johnson, N.R. & Wilkerson, C.G. "Arabidopsis thaliana IRX10 and two related proteins from psyllium and Physcomitrella patens are xylan xylosyltransferases." The Plant Journal 80,2, 207-215+ (2014). [DOI: 10.1111/tpj.12641] DOI Google Scholar	Feedstocks
2014	Karkehabadi, S., Helmich, K.E., Kaper, T., Hansson, H., Mikkelsen, N.E., Gudmundsson, M., Piens, K., Fujdala, M., Banerjee, G., Scott-Craig, J.S., et al. "Biochemical characterization and crystal structures of a fungal family 3 β-glucosidase, Cel3A from Hypocrea jecorina." Journal of Biological Chemistry 289, 31624-31637+ (2014). [DOI: 10.1074/jbc.M114.587766] DOI Google Scholar	Deconstruction
2014	Keating, D.H., Zhang, Y., Ong, I.M., McIlwain, S., Morales, E.H., Grass, J.A., Tremaine, M., Bothfeld, W., Higbee, A., Ulbrich, A., et al. "Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification." Frontiers in Microbiology 5, 402+ (2014). [DOI: 10.3389/fmicb.2014.00402] DOI Google Scholar	Conversion
2014	Kelkar, S., Li, Z., Bovee, J., Thelen, K.D., Kriegel, R.M. & Saffron, C.M. "Pyrolysis of North-American grass species: effect of feedstock composition and taxonomy on pyrolysis products." Biomass and Bioenergy 64, 152-161+ (2014). [DOI: 10.1016/j.biombioe.2014.03.032] DOI Google Scholar	Deconstruction, Sustainability
2014	Kells, B.J. & Swinton, S.M. "Profitability of cellulosic biomass production in the northern Great Lakes region." Agronomy Journal 106,2, 397-406+ (2014). [DOI: 10.2134/agronj2013.0397] DOI Google Scholar	Sustainability
2014	Kim, H. & Ralph, J. "A gel-state 2D-NMR method for plant cell wall profiling and analysis: model study with the amorphous cellulose and xylan from ball-milled cotton linters." RSC Advances 4,15, 7549-7560+ (2014). [DOI: 10.1039/C3RA46338A] DOI Google Scholar	Feedstocks
2014	Kim, J. & Reed, J.L. "Refining metabolic models and accounting for regulatory effects." Current Opinion in Biotechnology 29, 34-38+ (2014). [DOI: 10.1016/j.copbio.2014.02.009] DOI Google Scholar	Conversion
2014	Kim, S., Dale, B.E., Heijungs, R., Azapagic, A., Darlington, T. & Kahlbaum, D. "Indirect land use change and biofuels: mathematical analysis reveals a fundamental flaw in the regulatory approach." Biomass and Bioenergy 71, 408-412+ (2014). [DOI: 10.1016/j.biombioe.2014.09.015] DOI Google Scholar	Sustainability