Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2015	Pattathil, S., Hahn, M.G., Dale, B.E. & Chundawat, S.P.S. "Insights into plant cell wall structure, architecture, and integrity using glycome profiling of native and AFEX™-pre-treated biomass." Journal of Experimental Botany 66,14, 4279-4294+ (2015). [DOI: 10.1093/jxb/erv107] DOI Google Scholar	Deconstruction
2015	Piotrowski, J.S., Okada, H., Lu, F., Li, S.C., Hinchman, L., Ranjan, A., Smith, D.L., Higbee, A.J., Ulbrich, A., Coon, J.J., et al. "Plant-derived antifungal agent poacic acid targets β-1,3-glucan." Proceedings of the National Academy of Sciences of the United States of America 112,12, (2015). [DOI: 10.1073/pnas.1410400112] DOI Google Scholar	Feedstocks, Conversion
2015	Piotrowski, J.S., Simpkins, S.W., Li, S.C., Deshpande, R., McIlwain, S.J., Ong, I.M., Myers, C.L., Boone, C.B. & Andersen, R.J. "Chemical genomic profiling via barcode sequencing to predict compound mode of action." in Chemical Biology - Methods and Protocols. vol. 1263 299-318+ (Springer, 2015). [DOI: 10.1007/978-1-4939-2269-7_23] DOI Google Scholar	Conversion
2015	Pisithkul, T., Jacobson, T.B., O'Brien, T.J., Stevenson, D.M. & Amador-Noguez, D. "Phenolic amides are potent inhibitors of de novo nucleotide biosynthesis." Applied and Environmental Microbiology 81,17, 5761-5772+ (2015). [DOI: 10.1128/AEM.01324-15] DOI Google Scholar	Conversion
2015	Pollard, M., Delamarter, D., Martin, T.M. & Shachar-Hill, Y. "Lipid labeling from acetate or glycerol in cultured embryos of Camelina sativa seeds: a tale of two substrates." Phytochemistry 118, 192-203+ (2015). [DOI: 10.1016/j.phytochem.2015.07.021] DOI Google Scholar	Feedstocks
2015	Pollard, M., Martin, T.M. & Shachar-Hill, Y. "Lipid analysis of developing Camelina sativa seeds and cultured embryos." Phytochemistry 118, 23-32+ (2015). [DOI: 10.1016/j.phytochem.2015.07.022] DOI Google Scholar	Feedstocks
2015	Rachid, C.T.C., Balieiro, F.C., Fonseca, E.S., Peixoto, R.S., Chaer, G.M., Tiedje, J.M. & Rosado, A.S. "Intercropped silviculture systems, a key to achieving soil fungal community management in Eucalyptus plantations." PLOS ONE 10,2, (2015). [DOI: 10.1371/journal.pone.0118515] DOI Google Scholar	Sustainability
2015	Rafiee, M., Miles, K.C. & Stahl, S.S. "Electrocatalytic alcohol oxidation with TEMPO and bicyclic nitroxyl derivatives: driving force trumps steric effects." Journal of the American Chemical Society 137,46, 14751-14757+ (2015). [DOI: 10.1021/jacs.5b09672] DOI Google Scholar	Deconstruction
2015	Ruberti, C., Kim, S.-J., Stefano, G. & Brandizzi, F. "Unfolded protein response in plants: one master, many questions." Current Opinion in Plant Biology 27, 59-66+ (2015). [DOI: 10.1016/j.pbi.2015.05.016] DOI Google Scholar	Feedstocks
2015	Russ, R.S., Wangen, S.R., Nye, L., Shapiro, B., Strinz, W. & Ferris, M. "Fields of fuel." The Science Teacher 82,3, 3-8+ (2015). Google Scholar
2015	Serate, J., Xie, D., Pohlmann, E., Shabani, M., Hinchman, L., Higbee, A., McGee, M., La Reau, A., Klinger, G.E., Li, S., et al. "Controlling microbial contamination during hydrolysis of AFEX-pretreated corn stover and switchgrass: effects on hydrolysate composition, microbial response and fermentation." Biotechnology for Biofuels 8, 180+ (2015). [DOI: 10.1186/s13068-015-0356-2] DOI Google Scholar	Feedstocks, Deconstruction, Conversion, Sustainability
2015	Singh, S., Cheng, G., Sathitsuksanoh, N., Wu, D., Varanasi, P., George, A., Balan, V., Gao, X., Kumar, R., Dale, B.E., et al. "Comparison of different biomass pretreatment techniques and their impact on chemistry and structure." Frontiers in Energy Research 2, 62+ (2015). [DOI: 10.3389/fenrg.2014.00062] DOI Google Scholar	Deconstruction
2015	Sinistore, J.C., Reinemann, D.J., Izaurralde, C., Cronin, K.R., Meier, P.J., Runge, T.M. & Zhang, X. "Life cycle assessment of switchgrass cellulosic ethanol production in the Wisconsin and Michigan agricultural contexts." BioEnergy Research 897-909+ (2015). [DOI: 10.1007/s12155-015-9611-4] DOI Google Scholar	Sustainability
2015	Skevas, T., Hayden, N.J., Swinton, S.M. & Lupi, F. "Landowner willingness to supply marginal land for bioenergy production." Land Use Policy 50, 507-517+ (2015). [DOI: 10.1016/j.landusepol.2015.09.027] DOI Google Scholar	Sustainability
2015	Slater, S.C., Simmons, B.A., Rogers, T.S., Phillips, M.F., Nordahl, K. & Davison, B.H. "The DOE Bioenergy Research Centers: history, operations, and scientific output." BioEnergy Research 8,3, 881-896+ (2015). [DOI: 10.1007/s12155-015-9660-8] DOI Google Scholar
2015	Slininger, P.J., Shea-Andersh, M.A., Thompson, S.R., Dien, B.S., Kurtzman, C.P., Balan, V., Sousa, L. da C., Uppugundla, N., Dale, B.E. & Cotta, M.A. "Evolved strains of Scheffersomyces stipitis reaching high ethanol productivity on acid- and base-pretreated biomass hydrolyzate at high solids loading." Biotechnology for Biofuels 8,60, 27+ (2015). [DOI: 10.1186/s13068-015-0239-6] DOI Google Scholar	Deconstruction
2015	Smith, R.A., Gonzales-Vigil, E., Karlen, S.D., Park, J.-Y., Lu, F., Wilkerson, C.G., Samuels, L., Ralph, J. & Mansfield, S.D. "Engineering monolignol p-coumarate conjugates into poplar and Arabidopsis lignins." Plant Physiology 169, 2992-3001+ (2015). [DOI: 10.1104/pp.15.00815] DOI Google Scholar	Feedstocks
2015	Spero, M.A., Aylward, F.O., Currie, C.R. & Donohue, T.J. "Phylogenomic analysis and predicted physiological role of the proton-translocating NADH:quinone oxidoreductase (complex I) across bacteria." mBio 6,2, (2015). [DOI: 10.1128/mBio.00389-15] DOI Google Scholar	Conversion
2015	Su, Y.-K., Willis, L.B. & Jeffries, T.W. "Effects of aeration on growth, ethanol and polyol accumulation by Spathaspora passalidarum NRRL Y-27907 and Scheffersomyces stipitis NRRL Y-7124." Biotechnology and Bioengineering 112,3, 457-469+ (2015). [DOI: 10.1002/bit.25445] DOI Google Scholar	Conversion
2015	Sylvester, K., Wang, Q.-M.M., James, B., Mendez, R., Hulfachor, A.B. & Hittinger, C.T. "Temperature and host preferences drive the diversification of Saccharomyces and other yeasts: a survey and the discovery of eight new yeast species." FEMS Yeast Research 15,3, (2015). [DOI: 10.1093/femsyr/fov002] DOI Google Scholar	Conversion
2015	Tang, X., Sousa, L. da C., Jin, M., Chundawat, S.P.S., Chambliss, K., Lau, M.W., Xiao, Z., Dale, B.E. & Balan, V. "Designer synthetic media for studying microbial-catalyzed biofuel production." Biotechnology for Biofuels 8, 1+ (2015). [DOI: 10.1186/s13068-014-0179-6] DOI Google Scholar	Deconstruction
2015	Tanger, P., Vega-Sánchez, M.E., Fleming, M., Tran, K., Singh, S., Abrahamson, J.B., Jahn, C.E., Santoro, N., Naredo, E.B., Baraoidan, M., et al. "Cell wall composition and bioenergy potential of rice straw tissues are influenced by environment, tissue type, and genotype." BioEnergy Research 8, 1165-1182+ (2015). [DOI: 10.1007/s12155-014-9573-y] DOI Google Scholar
2015	Tiemann, L.K. & Grandy, S. "Mechanisms of soil carbon accrual and storage in bioenergy cropping systems." Global Change Biology – Bioenergy 7,2, 161-174+ (2015). [DOI: 10.1111/gcbb.12126] DOI Google Scholar	Sustainability
2015	Tiemann, L.K., Grandy, A.S., Atkinson, E.E., Marin-Spiotta, E. & McDaniel, M.D. "Crop rotational diversity enhances belowground communities and functions in an agroecosystem." Ecology Letters 18,8, 761-771+ (2015). [DOI: 10.1111/ele.12453] DOI Google Scholar	Sustainability
2015	Tjellstrom, H., Strawsine, M. & Ohlrogge, J.B. "Tracking synthesis and turnover of triacylglycerol in leaves." Journal of Experimental Botany 66,5, 1453-1461+ (2015). [DOI: 10.1093/jxb/eru500] DOI Google Scholar	Feedstocks