Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2016	Weraduwage, S.M., Kim, S.-J., Renna, L., Anozie, F.C., Sharkey, T.D. & Brandizzi, F. "Pectin methylesterification impacts the relationship between photosynthesis and plant growth." Plant Physiology 171,2, 833-848+ (2016). [DOI: 10.1104/pp.16.00173] DOI Google Scholar	Feedstocks
2016	Wisecaver, J.H., Alexander, W.G., King, S.B., Hittinger, C.T. & Rokas, A. "Dynamic evolution of nitric oxide detoxifying flavohemoglobins, a family of single-protein metabolic modules in bacteria and eukaryotes." Molecular Biology and Evolution 33,8, 1979-1987+ (2016). [DOI: 10.1093/molbev/msw073] DOI Google Scholar	Conversion
2016	Woods, D.P. & Amasino, R.M. "Dissecting the control of flowering time in grasses ssing Brachypodium distachyon." in Genetics and Genomics of Brachypodium. vol. 18 259-273+ (Springer International Publishing, 2016). [DOI: 10.1007/7397_2015_10] DOI Google Scholar	Feedstocks
2016	Woods, D.P., McKeown, M.A., Dong, Y., Preston, J.C. & Amasino, R.M. "Evolution of VRN2/Ghd7-like genes in vernalization-mediated repression of grass flowering." Plant Physiology 170,4, 2124-2135+ (2016). [DOI: 10.1104/pp.15.01279] DOI Google Scholar	Feedstocks
2016	Wu, W., Henao, C.A. & Maravelias, C.T. "A superstructure representation, generation, and modeling framework for chemical process synthesis." American Institute of Chemical Engineers Journal 62,9, 3199-3214+ (2016). [DOI: 10.1002/aic.15300] DOI Google Scholar	Deconstruction
2016	Xue, C., Penton, R., Zhang, B., Zhao, M., Rothstein, D.E., Mladenoff, D.J., Forrester, J.A., Shen, Q. & Tiedje, J.M. "Soil fungal and bacterial responses to conversion of open land to short rotation woody biomass crops." Global Change Biology – Bioenergy 8,4, 723-736+ (2016). [DOI: 10.1111/gcbb.12303] DOI Google Scholar	Sustainability
2016	Yang, S., Fei, Q., Zhang, Y., Contreras, L.M., Utturkar, S.M., Brown, S.D., Himmel, M.E. & Zhang, M. "Zymomonas mobilis as a model system for production of biofuels and biochemicals." Microbial Biotechnology 9,6, 199-717+ (2016). [DOI: 10.1111/1751-7915.12408] DOI Google Scholar	Conversion
2016	Yelle, D.J. & Ralph, J. "Characterizing phenol–formaldehyde adhesive cure chemistry within the wood cell wall." International Journal of Adhesion & Adhesives 70, 26-36+ (2016). [DOI: 10.1016/j.ijadhadh.2016.05.002] DOI Google Scholar
2016	Yoo, C.G., Kim, H., Lu, F., Azarpira, A., Pan, X., Oh, K.K., Kim, J.S., Ralph, J. & Kim, T.H. "Understanding the physicochemical characteristics and the improved enzymatic saccharification of corn stover pretreated with aqueous and gaseous ammonia." BioEnergy Research 9, 67-76+ (2016). [DOI: 10.1007/s12155-015-9662-6] DOI Google Scholar	Feedstocks
2016	Yue, F., Lu, F., Ralph, S. & Ralph, J. "Identification of 4-O-5-units in softwood lignins via definitive lignin models and NMR." Biomacromolecules 17, 1909-1920+ (2016). [DOI: 10.1021/acs.biomac.6b00256] DOI Google Scholar	Feedstocks
2016	Zenone, T., Zona, D., Gelfand, I., Gielen, B., Camino-Serrano, M. & Ceulemans, R. "CO2 uptake is offset by CH4 and N2O emissions in a poplar short-rotation coppice." Global Change Biology – Bioenergy 8,3, 524-538+ (2016). [DOI: 10.1111/gcbb.12269] DOI Google Scholar	Sustainability
2016	Zhang, M., Cao, X., Jia, Q. & Ohlrogge, J. "FUSCA3 activates triacylglycerol accumulation in Arabidopsis seedlings and tobacco BY2 cells." The Plant Journal 88, 95-107+ (2016). [DOI: 10.1111/tpj.13233] DOI Google Scholar	Feedstocks
2016	Zhou, X., Peris, D., Kominek, J., Kurtzman, C.P., Hittinger, C.T. & Rokas, A. "In silico whole genome sequencer and analyzer (iWGS): a computational pipeline to guide the design and analysis of de novo genome sequencing studies." G3: Genes \| Genomes \| Genetics 6, 3655-3662+ (2016). [DOI: 10.1534/g3.116.034249] DOI Google Scholar	Conversion
2016	Zienkiewicz, K., Du, Z.-Y., Ma, W., Vollheyde, K. & Benning, C. "Stress-induced neutral lipid biosynthesis in microalgae—Molecular, cellular and physiological insights." Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids 1861,9, 1269-1281+ (2016). [DOI: 10.1016/j.bbalip.2016.02.008] DOI Google Scholar	Feedstocks
2015	Abraha, M., Chen, J., Chu, H., Zenone, T., John, R., Su, Y.-J., Hamilton, S.K. & Robertson, P. "Evapotranspiration of annual and perennial biofuel crops in a variable climate." Global Change Biology – Bioenergy 7, 1344-1356+ (2015). [DOI: 10.1111/gcbb.12239] DOI Google Scholar	Sustainability
2015	Anderson, N.A., Tobimatsu, Y., Ciesielski, P.N., Ximenes, E., Ralph, J., Donohoe, B.S., Ladisch, M. & Chapple, C. "Manipulation of guaiacyl and syringyl monomer biosynthesis in an Arabidopsis cinnamyl alcohol dehydrogenase mutant results in atypical lignin biosynthesis and modified cell wall structure." The Plant Cell 27,8, 2195-2209+ (2015). [DOI: 10.1105/tpc.15.00373] DOI Google Scholar	Feedstocks
2015	Araya, F., Troncoso, E., Mendonca, R.T. & Freer, J. "Condensed lignin structures and re-localization achieved at high severities in autohydrolysis of Eucalyptus globulus wood and their relationship with cellulose accessibility." Biotechnology and Bioengineering 112,9, 1783-1791+ (2015). [DOI: 10.1002/bit.25604] DOI Google Scholar	Feedstocks
2015	Austin, S., Kontur, W.S., Ulbrich, A., Oshlag, Z., Zhang, W., Higbee, A., Zhang, Y., Coon, J.J., Hodge, D.B., Donohue, T.J., et al. "Metabolism of multiple aromatic compounds in corn stover hydrolysate by Rhodopseudomonas palustris." Environmental Science & Technology 49,14, 8914-8922+ (2015). [DOI: 10.1021/acs.est.5b02062] DOI Google Scholar	Feedstocks, Deconstruction, Conversion
2015	Aylward, F.O., Khadempour, L., Tremmel, D.M., McDonald, B.R., Nicora, C.D., Wu, S., Moore, R.J., Orton, D.J., Monroe, M.E., Piehowski, P.D., et al. "Enrichment and broad representation of plant biomass-degrading enzymes in the specialized hyphal swellings of Leucoagaricus gongylophorus, the fungal symbiont of leaf-cutter ants." PLOS ONE 10,8, (2015). [DOI: 10.1371/journal.pone.0134752] DOI Google Scholar	Deconstruction
2015	Bahlai, C.A., Werf, W. vander, O'Neal, M., Hemerik, L. & Landis, D.A. "Shifts in dynamic regime of an invasive lady beetle are linked to the invasion and insecticidal management of its prey." Ecological Applications 25,7, 1807-1818+ (2015). [DOI: 10.1890/14-2022.1] DOI Google Scholar	Sustainability
2015	Baker, E.C., Wang, B., Bellora, N., Peris, D., Hulfachor, A.B., Koshalek, J.A., Adams, M., Libkind, D. & Hittinger, C.T. "The genome sequence of Saccharomyces eubayanus and the domestication of lager-brewing yeasts." Molecular Biology and Evolution 32,11, 2818-2831+ (2015). [DOI: 10.1093/molbev/msv168] DOI Google Scholar	Conversion
2015	Bandaru, V., Izaurralde, C. & Zhao, K. "Biomass potential of switchgrass and miscanthus on the USA’s marginal lands." in Sustainable Biofuels: An Ecological Assessment of Future Energy. 299-317+ (DeGruyter, 2015). Google Scholar	Sustainability
2015	Bansal, N., Bhalla, A., Pattathil, S., Adelman, S.L., Hahn, M.G., Hodge, D.B. & Hegg, E.L. "Cell wall-associated transition metals improve alkaline-oxidative pretreatment in diverse hardwoods." Green Chemistry 18,5, 1405-1415+ (2015). [DOI: 10.1039/C5GC01748C] DOI Google Scholar	Deconstruction
2015	Beissinger, T.M., Rosa, G.J.M., Kaeppler, S.M., Gianola, D. & de Leon, N. "Defining window-boundaries for genomic analyses using smoothing spline techniques." Genetics Selection Evolution 47,1, 30+ (2015). [DOI: 10.1186/s12711-015-0105-9] DOI Google Scholar	Feedstocks
2015	Bhardwaj, A.K., Zenone, T. & Chen, J. Sustainable Biofuels: An Ecological Assessment of Future Energy 346+ (DeGruyter, 2015). Google Scholar	Sustainability