Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2023
Li, H., Kang, X., Yang, M., Kasseney, B.D., Zhou, X., Liang, S., Zhang, X., Wen, J.-L., Yu, B., Liu, N., et al. "Molecular insights into the evolution of woody plant decay in the gut of termites." Science Advances 9,21, (2023). [DOI: 10.1126/sciadv.adg1258]
2023
Li, X., Chou, M.-Y., Bonito, G.M. & Last, R.L. "Anti-fungal bioactive terpenoids in the bioenergy crop switchgrass (Panicum virgatum) may contribute to ecotype-specific microbiome composition." Communications Biology 6,1, 917+ (2023). [DOI: 10.1038/s42003-023-05290-3]
2023
Liu, L., Ansari, R.U., Vang-Smith, M., Hittinger, C.T. & Sato, T.K. "A role for ion homeostasis in yeast ionic liquid tolerance." microPublication Biology 2023, 10.17912/micropub.biology.000718+ (2023). [DOI: 10.17912/micropub.biology.000718]
2023
Lucas, M., Gil, J., Robertson, G.P., Ostrom, N.E. & Kravchenko, A. "Changes in soil pore structure generated by the root systems of maize, sorghum and switchgrass affect in situ N2O emissions and bacterial denitrification." Biology and Fertility of Soils DOI: 10.1007/s00374-023-01761-1, (2023). [DOI: 10.1007/s00374-023-01761-1]
2023
Lucas, M., Santiago, J.P., Chen, J., Guber, A. & Kravchenko, A. "The soil pore structure encountered by roots affects plant-derived carbon inputs and fate." New Phytologist 240,2, 515-528+ (2023). [DOI: 10.1111/nph.19159]
2023
Mechan-Llontop, M.E., Mullet, J. & Shade, A. "Phyllosphere exudates select for distinct microbiome members in sorghum epicuticular wax and aerial root mucilage." Phytobiomes Journal 7,2, 184-197+ (2023). [DOI: 10.1094/pbiomes-08-22-0046-fi]
Sustainability
2023
Muro-Villanueva, F., Pysh, L.D., Kim, H., Bouse, T., Ralph, J., Luo, Z., Cooper, B.R., Jannasch, A.S., Zhang, Z., Gu, C., et al. "Pinoresinol rescues developmental phenotypes of Arabidopsis phenylpropanoid mutants overexpressing FERULATE 5-HYDROXYLASE." Proceedings of the National Academy of Sciences of the United States of America 120,31, (2023). [DOI: 10.1073/pnas.2216543120]
2023
Myers, K.S., Ingle, A.T., Walters, K.A., Fortney, N.W., Scarborough, M.J., Donohue, T.J. & Noguera, D.R. "Comparison of metagenomes from fermentation of various agroindustrial residues suggests a common model of community organization." Frontiers in Bioengineering and Biotechnology 11, 1197175+ (2023). [DOI: 10.3389/fbioe.2023.1197175]
2023
Nalabothu, R.L., Fisher, K.J., LaBella, A.L., Meyer, T.A., Opulente, D.A., Wolters, J.F., Rokas, A. & Hittinger, C.T. "Codon optimization improves the prediction of xylose metabolism from gene content in budding yeasts." Molecular Biology and Evolution 40,6, (2023). [DOI: 10.1093/molbev/msad111]
2023
O'Banion, B.S., Jones, P., Demetros, A.A., Kelley, B.R., Knoor, L.H., Wagner, A.S., Chen, J.-G., Muchero, W., Reynolds, T.B., Jacobson, D., et al. "Plant myo-inositol transport influences bacterial colonization phenotypes." Current Biology 33,15, 3111-3124+ (2023). [DOI: 10.1016/j.cub.2023.06.057]
2023
Parra, M., Libkind, D., Hittinger, C.T., Alvarez, L. & Bellora, N. "Assembly and comparative genome analysis of a Patagonian Aureobasidium pullulans isolate reveals unexpected intraspecific variation." Yeast 40,5-6, 197-213+ (2023). [DOI: 10.1002/yea.3853]
2023
Parrell, D., Lemke, R.A.S., Olson, J., Donohue, T.J. & Wright, E. "Quantitating storage granule size, accumulation, and localization in Rhodobacter sphaeroides using cryo-electron tomography and light microscopy." Microscopy and Microanalysis 29,29 Suppl 1, 896-897+ (2023). [DOI: 10.1093/micmic/ozad067.444]
2023
de Lima, A.E.P., Wrobel, R.L., Paul, B., Anthony, L.C., Sato, T.K., Zhang, Y., Hittinger, C.T. & Maravelias, C.T. "High yield co-production of isobutanol and ethanol from switchgrass: experiments, and process synthesis and analysis." Sustainable Energy & Fuels 7,14, 3266-3275+ (2023). [DOI: 10.1039/D2SE01741E]
2023
Peng, X., Tong, B., Lee, J., Wang, K., Yu, X., Huang, X., Wen, J., Makarem, M., Pang, H., Hinjan, S., et al. "Overexpression of a gibberellin 20-oxidase gene in poplar xylem led to an increase in the size of nanocellulose fibrils and improved paper properties." Carbohydrate Polymers 314, 120959+ (2023). [DOI: 10.1016/j.carbpol.2023.120959]
2023
Peris, D., Ubbelohde, E.J., Kuang, M.C., Kominek, J., Langdon, Q.K., Adams, M., Koshalek, J.A., Hulfachor, A.B., Opulente, D.A., Hall, D.J., et al. "Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces." Nature Communications 14,1, 690+ (2023). [DOI: 10.1038/s41467-023-36139-2]
Conversion
2023
Perry, S., Falvo, G., Mosier, S. & Robertson, P. "Long-term changes in soil carbon and nitrogen fractions in switchgrass, native grasses, and no-till corn bioenergy production systems." Soil Science Society of America Journal DOI: 10.1002/saj2.20575, (2023). [DOI: 10.1002/saj2.20575]
2023
Petit, S. & Landis, D.A. "Landscape-scale management for biodiversity and ecosystem services." Agriculture, Ecosystems & Environment 347, 108370+ (2023). [DOI: 10.1016/j.agee.2023.108370]
2023
Pfleger, B.F. & Takors, R. "Recent progress in the synthesis of advanced biofuel and bioproducts." Current Opinion in Biotechnology 80, 102913+ (2023). [DOI: 10.1016/j.copbio.2023.102913]
2023
Ralph, J., Kim, H., Lu, F., Smith, R.A., Karlen, S.D., Yoshioka, K., Eugene, A., Liu, S., Sener, C., Ando, D., et al. "Lignins and lignification: new developments and emerging concepts." in Recent Advances in Polyphenol Research. vol. 8 1-50+ (Wiley-Blackwell, 2023). [DOI: 10.1002/9781119844792.ch1]
2023
Raza, S., Miller, M., Hamberger, B. & Vermaas, J.V. "Plant terpenoid permeability through biological membranes explored via molecular simulations." The Journal of Physical Chemistry B 127,5, 1144-1157+ (2023). [DOI: 10.1021/acs.jpcb.2c07209]
2023
Rivier, A.J., Myers, K.S., Garcia, A.K., Sobol, M.S. & Kacar, B. "Regulatory response to a hybrid ancestral nitrogenase in Azotobacter vinelandii." Microbiology Spectrum DOI: 10.1128/spectrum.02815-23, (2023). [DOI: 10.1128/spectrum.02815-23]
2023
Robertson, P. "Denitrification and the challenge of scaling microsite knowledge to the globe." mLife 2,3, 229-238+ (2023). [DOI: 10.1002/mlf2.12080]
2023
Robinson, D.E., Vanacloig-Pedros, E., Cai, R., Place, M., Hose, J. & Gasch, A.P. "Gene-by-environment interactions influence the fitness cost of gene copy-number variation in yeast." G3: Genes | Genomes | Genetics 13,10, (2023). [DOI: 10.1093/g3journal/jkad159]
2023
Schmitz, J.M., Wolters, J.F., Murray, N.H., Guerra, R.M., Bingman, C.A., Hittinger, C.T. & Pagliarini, D.J. "Aim18p and Aim46p are chalcone isomerase (CHI)-domain-containing mitochondrial hemoproteins in Saccharomyces cerevisiae." Journal of Biological Chemistry 299,3, 102981+ (2023). [DOI: 10.1016/j.jbc.2023.102981]
2023
Shade, A. "Microbiome rescue: directing resilience of environmental microbial communities." Current Opinion in Microbiology 72, 102263+ (2023). [DOI: 10.1016/j.mib.2022.102263]