Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2021
O'Brien, C.E., Oliveira-Pacheco, J., Cinneide, E.O., Haase, M.A.B., Hittinger, C.T., Rogers, T.R., Zaragoza, O., Bond, U. & Butler, G. "Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples." PLOS Pathogens 17,3, (2021). [DOI: 10.1371/journal.ppat.1009138]
2021
O’Neill, E.G. & Maravelias, C.T. "Towards integrated landscape design and biofuel supply chain optimization." Current Opinion in Chemical Engineering 31, 100666+ (2021). [DOI: 10.1016/j.coche.2020.100666]
Sustainability
2021
Oates, N.C., Abood, A., Schirmacher, A.M., Alessi, A.M., Bird, S.M., Bennett, J.P., Leadbeater, D.R., Li, Y., Dowle, A.A., Liu, S., et al. "A multi-omics approach to lignocellulolytic enzyme discovery reveals a new ligninase activity from Parascedosporium putredinis NO1." Proceedings of the National Academy of Sciences of the United States of America 118,18, (2021). [DOI: 10.1073/pnas.2008888118]
2021
Oliver, J., Fan, M., McKinley, B., Zemelis-Durfee, S., Brandizzi, F., Wilkerson, C. & Mullet, J.E. "The AGCVIII kinase Dw2 modulates cell proliferation, endomembrane trafficking, and MLG/xylan cell wall localization in elongating stem internodes of Sorghum bicolor." The Plant Journal 105,4, 1053-1071+ (2021). [DOI: 10.1111/tpj.15086]
2021
Ostrom, P.H., DeCamp, S., Gandhi, H., Haslun, J. & Ostrom, N.E. "The influence of tillage and fertilizer on the flux and source of nitrous oxide with reference to atmospheric variation using laser spectroscopy." Biogeochemistry 152, 143-159+ (2021). [DOI: 10.1007/s10533-020-00742-y]
2021
Perez, J.M., Kontur, W.S., Gehl, C., Gille, D.M., Ma, Y., Niles, A.V., Umana, G., Donohue, T.J. & Noguera, D.R. "Redundancy in aromatic O-demethylation and ring opening reactions in Novosphingobium aromaticivorans and their impact in the metabolism of plant derived phenolics." Applied and Environmental Microbiology 87,8, (2021). [DOI: 10.1128/AEM.02794-20]
2021
Roley, S.S., Ulbrich, T.C. & Robertson, P. "Nitrogen fixation and resorption efficiency differences among twelve upland and lowland switchgrass cultivars." Phytobiomes 5,1, 97-107+ (2021). [DOI: 10.1094/PBIOMES-11-19-0064-FI]
2021
Ryu, J. & Maravelias, C.T. "A generalized distillation network synthesis model." Chemical Engineering Science 244, 116766+ (2021). [DOI: 10.1016/j.ces.2021.116766]
Deconstruction, Sustainability
2021
Saha, D., Basso, B. & Robertson, P. "Machine learning improves predictions of agricultural nitrous oxide (N2O) emissions from intensively managed cropping systems." Environmental Research Letters 16,2, 024004+ (2021). [DOI: 10.1088/1748-9326/abd2f3]
Sustainability
2021
Shirkey, G., Belongeay, M., Wu, S., Ma, X., Tavakol-Davani, H., Anctil, A., Marquart-Pyatt, S., Stewart, R.A., Sinha, P., Corkish, R., et al. "An environmental and societal analysis of the US electrical energy industry based on the water–energy nexus." Energies 14,9, 2633+ (2021). [DOI: 10.3390/en14092633]
Sustainability
2021
Smercina, D.N., Bowsher, A.W., Evans, S.E., Friesen, M.L., Eder, E.K., Hoyt, D.W. & Tiemann, L.K. "Switchgrass rhizosphere metabolite chemistry driven by nitrogen availability." Phytobiomes 5,1, 88-96+ (2021). [DOI: 10.1094/PBIOMES-09-19-0055-FI]
Sustainability
2021
Smith, R.A., Cass, C.L., Petrik, D.L., Padmakshan, D., Ralph, J., Sedbrook, J.C. & Karlen, S.D. "Stacking AsFMT overexpression with BdPMT loss of function enhances monolignol ferulate production in Brachypodium distachyon." Plant Biotechnology Journal DOI: 10.1111/pbi.13606, (2021). [DOI: 10.1111/pbi.13606]
Feedstocks
2021
Ulbrich, T.C., Friesen, M., Roley, S.S., Tiemann, L.K. & Evans, S.E. "Intraspecific variability in root traits and edaphic conditions influence soil microbiomes across 12 switchgrass cultivars." Phytobiomes Journal 5,1, 108-120+ (2021). [DOI: 10.1094/pbiomes-12-19-0069-fi]
Sustainability
2021
Wang, P., Meng, F., Moore, B.M. & Shiu, S.-H. "Impact of short-read sequencing on the misassembly of a plant genome." BMC Genomics 22,1, 99+ (2021). [DOI: 10.1186/s12864-021-07397-5]
Sustainability
2021
Wang, P., Moore, B.M., Uygun, S., Lehti-Shiu, M.D., Barry, C.S. & Shiu, S.-H. "Optimising the use of gene expression data to predict plant metabolic pathway memberships." New Phytologist 231, 475-489+ (2021). [DOI: 10.1111/nph.17355]
2021
Xie, Y. & Lark, T.J. "Mapping annual irrigation from Landsat imagery and environmental variables across the conterminous United States." Remote Sensing of Environment 260, 112445+ (2021). [DOI: 10.1016/j.rse.2021.112445]
Sustainability
2021
Yu, K.M.J., McKinley, B., Rooney, W.L. & Mullet, J.E. "High planting density induces the expression of GA3-oxidase in leaves and GA mediated stem elongation in bioenergy sorghum." Scientific Reports 11,1, 46+ (2021). [DOI: 10.1038/s41598-020-79975-8]
2021
Yue, F., Lan, W., Zhang, L., Lu, F., Sun, R. & Ralph, J. "Efficient synthesis of pinoresinol, an important lignin dimeric model compound." Frontiers in Energy Research 9, 640337+ (2021). [DOI: 10.3389/fenrg.2021.640337]
2021
Zhalnina, K., Hawkes, C., Shade, A., Firestone, M.K. & Pett-Ridge, J. "Managing plant microbiomes for sustainable biofuel production." Phytobiomes 5,1, 3-13+ (2021). [DOI: 10.1094/PBIOMES-12-20-0090-E]
2021
Zhang, B., Penton, R., Yu, Z., Xue, C., Chen, Q., Chen, Z., Yan, C., Zhang, Q., Zhao, M., Quensen, J.F., et al. "A new primer set for Clade I nosZ that recovers genes from a broader range of taxa." Biology and Fertility of Soils 57,4, 523-531+ (2021). [DOI: 10.1007/s00374-021-01544-6]
Sustainability
2021
Zhang, J., Shen, W., Collings, C., Meulen, K.A.V., Fox, B.G., Ramos, L.M.V., Dumesic, J.A. & Ding, S.-Y. "Visualizing plant cell wall changes proves the superiority of hydrochloric acid over sulfuric acid catalyzed γ-valerolactone pretreatment." Chemical Engineering Journal 412, 128660+ (2021). [DOI: 10.1016/j.cej.2021.128660]
2021
Zhang, L., MacQueen, A., Bonnette, J., Fritschi, F.B., Lowry, D.B. & Juenger, T.E. "QTL x environment interactions underlie ionome divergence in switchgrass." G3: Genes | Genomes | Genetics DOI: 10.1093/g3journal/jkab144, (2021). [DOI: 10.1093/g3journal/jkab144]
Sustainability
2021
Zhang, X., Lark, T.J., Clark, C.M., Yuan, Y. & LeDuc, S.D. "Grassland-to-cropland conversion increased soil, nutrient, and carbon losses in the US Midwest between 2008 and 2016." Environmental Research Letters 16,5, 054018+ (2021). [DOI: 10.1088/1748-9326/abecbe]
Sustainability
2020
Abbas, M., Peszlen, I., Shi, R., Kim, H., Katahira, R., Kafle, K., Xiang, Z., Huang, X., Min, D., Mohamadamin, M., et al. "Involvement of CesA4, CesA7-A/B and CesA8-A/B in secondary wall formation in Populus trichocarpa wood." Tree Physiology 40,1, 73-89+ (2020). [DOI: 10.1093/treephys/tpz020]
2020
Abraha, M., Chen, J., Hamilton, S.K. & Robertson, P. "Long-term evapotranspiration rates for rainfed corn and perennial bioenergy crops in a mesic landscape." Hydrological Processes 34,3, 810-822+ (2020). [DOI: 10.1002/hyp.13630]
Sustainability