Improved Catalysts Publications

Aqueous Phase Catalytic Processing in Biomass Valorization to H2 and Liquid Fuels
2012. CRC PRESS. Gürbüz, Elif I.; Braden, D; Dumesic, James A

Pathways involved in reductant distribution during photobiological H2 production by Rhodobacter sphaeroides
2011. AMER SOC MICROBIOLOGY. Kontur, W. S.; Ziegelhoffer, E. C.; Spero, M.; Imam, S.; Noguera, Daniel R.; Donohue, Timothy J.

Isolation of improved free fatty acid overproducing strains of Escherichia coli via Nile red based high-throughput screening
2011. Environmental Progress & Sustainable Energy. Hoover, Spencer W.; Youngquist, J. Tyler; Angart, Phil A.; Withers, Sydnor T.; Lennen, Rebecca M.; Pfleger, Brian F.

Large-scale bi-level strain design approaches and mixed-integer programming solution techniques
2011. Public Library of Science ONE. Kim, Joonhoon; Reed, Jennifer L.; Maravelias, Christos T.

Catalytic Conversion of Lignocellulosic Biomass to Fuels: Process Development and Technoeconomic Evaluation
2011. PERGAMON-ELSEVIER SCIENCE LTD. Murat Sen, S.; Henao, Carlos A.; Braden, Drew J.; Dumesic, James A.; Maravelias, Christos T.

Comparative Genomics of Xylose-Fermenting Fungi for Enhanced Biofuel Production
2011. Proceedings of the National Academies of Science. D.J. Wohlbach; A. Kuo; T.K. Sato; K.M. Potts; A.A. Salamov; K.M. LaButti; H. Sun; A. Clum; J.L. Pangilinan; E.A. Lindquist; S. Lucas; A. Lapidus; M. Jin; C. Gunawan; V. Balan; B.E. Dale; T.W. Jeffries; R. Zinkel; K.W. Barry; I.V. Grigoriev; A.P. Gasch

iRsp1095: A Genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network
2011. BMC Systems Biology. Saheed Imam; Safak Yilmaz; Ugur Sohmen; Alexander S Gorzalski; Jennifer L Reed; Daniel R Noguera; Timothy J Donohue

Production of Biofuels from Cellulose and Corn Stover Using Alkylphenol Solvents
2011. ChemSusChem. Alonso DM, Wettstein SG, Bond JQ, Root TW, & Dumesic JA

Bacterial production of free fatty acids from freshwater macroalgal cellulose
2011. Applied Microbiology and Biotechnology. Hoover, Spense W.; Marner, Wesley D., 2nd; Brownson, Amy K.; Lennen, Rebecca M.; Wittkopp, Tyler M.; Yoshitani, un.; Zulkifly, Shahrizim; Graham, Linda E.; Chaston, Sheena D.; McMahon, Katherine D.; Pfleger, Brian F.

Modular Synthase-Encoding Gene Involved in alpha-Olefin Biosynthesis in Synechococcus sp. Strain PCC 7002
2011. Applied and environmental microbiology. Mendez-Perez D, Begemann MB, & Pfleger BF

Production of liquid hydrocarbon fuels by catalytic conversion of biomass-derived levulinic acid
2011. Green Chemistry. Braden DJ, Henao CA, Heltzel J, Maravelias CC, & Dumesic JA

Conversion of fructose into 5-(hydroxymethyl)furfural in sulfolane
2011. WILEY-BLACKWELL. Caes BR & Raines RT

Reactive Extraction of Levulinate Esters and Conversion to γ-Valerolactone for Production of Liquid Fuels
2011. ChemSusChem. Gürbüz, Elif I.; Alonso, David Martin; Bond, Jesse Q.; Dumesic, James A.

Conversion of fructose to 5-(hydroxymethyl)furfural in sulfolane
2011. ChemSusChem. Caes, B. R. & Raines, R. T.

Global Responses of Bacteria to Oxygen Deprivation
2010. ASM Press. Kiley, Patricia J. Donohue, Timothy J.

Production of Diesel and gasoline hydrocarbon fuels from cellulose via catalytic upgrading of g-valerolactone
2010. Preprints of the American Chemical Society Division of Petroleum Chemistry. Serrano-Ruiz, J.C Braden, D.J. West, Ryan M. Dumesic, James A.

Synergy between 13C-metabolic flux analysis and flux balance analysis for understanding metabolic adaption to anaerobiosis in E. coli
2010. Metabolic Engineering. Chen, Xuewen Alonso, Ana P. Allen, Doug K. Reed, Jennifer L. Shachar-Hill, Yair

An Automated Phenotype-Driven Approach (GeneForce) for Refining Metabolic and Regulatory Models
2010. PUBLIC LIBRARY SCIENCE. Barua, D; Kim, J; Reed, JL

Conversion of cellulose to hydrocarbon fuels by progressive removal of oxygen
2010. Applied Catalysis B: Environmental . Serrano-Ruiz, Juan Carlos; Braden, Drew J.; West, Ryan M.; Dumesic, James A.

Integration of C-C coupling reactions of biomass-derived oxygenates to fuel-grade compounds
2010. Applied Catalysis B: Environmental. Gürbüz, Elif I., Kunkes, Edward L., Dumesic, James A.

Production of liquid hydrocarbon transportation fuels by oligomerization of biomass-derived C9 alkenes
2010. Green Chemistry. Alonso, David Martin, Bond, Jesse Q., Dumesic, James A.

OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains
2010. BMC Systems Biology. Kim, Joonhoon and Reed, Jennifer

Cellvibrio japonicus requires the Type II secretion system for utilization of cellulosic substrates
2010. Appl. Environ. Microbiol.. Gardner, Jeffrey G., Keating, David H.

A process for microbial hydrocarbon synthesis: Overproduction of fatty acids in Escherichia coli and catalytic conversion to alkanes
2010. Biotechnology and Bioengineering. Lennen, Rebecca M., Braden, Drew J., West, Ryan M., Dumesic, James A., Pfleger, Brian F.

Stb3 Plays a Role in the Glucose-Induced Transition from Quiescence to Growth in Saccharomyces cerevisiae
2010. Genetics. Liko, Dritan, Conway, Michael K., Grunwald, Douglas S., Heideman, Warren

Dual-bed catalyst system for C–C coupling of biomass-derived oxygenated hydrocarbons to fuel-grade compounds
2010. Green Chemistry. Gürbüz, Elif I. Kunkes, Edward L. Dumesic, James A.

Integrated Catalytic Conversion of {gamma}-Valerolactone to Liquid Alkenes for Transportation Fuels
2010. Science. Bond, J. Q., Alonso, D. M., Wang, D., West, R. M. & Dumesic, J. A.

The US Department of Energy Great Lakes Bioenergy Research Center: Midwestern Biomass as a Resource for Renewable Fuels
2010. BioEnergy Research. Slater, S., Keegstra, K., and T. J. Donohue.

Electron partitioning during light- and nutrient-powered hydrogen production by Rhodobacter sphaeroides.
2010. BioEnergy Research. Yilmaz, S.; Sanders, A.; Kontur, W.; Donohue, T. J.; and D. R. Noguera.

Fermentable sugars by chemical hydrolysis of biomass
2010. Proceedings of the National Academy of Sciences, USA. Binder, J. B. & Raines, R. T.

Practical application of synthetic biology principles
2009. Biotechnology Journal. Marner, Wesley D., 2nd

Opportunities and challenges for next generation biofuels
2009. Controversies in Science and Technology. Fortenbery, T. R.; Donohue, Timothy J.

Vapor-Phase C-C Coupling Reactions of Biomass-Derived Oxygenates over Pd/CeZrOx Catalysts
2009. Journal of Catalysis. Kunkes, Edward L.; Gürbüz, Elif I.; Dumesic, James A.

Yeast metabolic engineering for hemicellulosic ethanol production
2009. Current Opinion in Biotechnology. Van Vleet, J. H.; Jeffries, Thomas W.

Heterocyst Envelope Glycolipids
2009. Lipids in Photosynthesis.. Awai, K., Lechno-Yossef, S. & Wolk, C. P.

Synthetic metabolic pipelines
2009. Nat Biotech. DeLisa, Matthew P. Conrado, Robert J.

Simple Chemical Transformation of Lignocellulosic Biomass into Furans for Fuels and Chemicals
2009. J. Am. Chem. Soc.. Binder J.B., Raines, R.T.

Pichia stipitis genomics, transcriptomics, and gene clusters
2008. FEMS Yeast Res. Jeffries, T. W. & Van Vleet, J. R.

Microbes in the Energy Grid
2008. Science. Tiedje, James Donohue, Timothy