Publications

Identifying protein-protein interactions in Arabidopsis by co-immunoprecipitation of GFP-tagged proteins and proteomic detection
2012. Fluorescent Proteins. Held, Michael A.; Danhof, Linda; Brandizzi, Federica

Structural characterization of alkaline hydrogen peroxide pretreated grasses exhibiting diverse lignin phenotypes
2012. Biotechnol Biofuels. Li, M., C. E. Foster, et al.

Hierarchical marginal land assessment for land use planning
2012. Land Use Policy . Kang, S., W. M. Post, et al.

GC-based Detection of Aldononitrile Acetate Derivatized Glucosamine and Muramic Acid for Microbial Residue Determination in Soil Samples: Analytical Protocol and Derivative Validation
2012. Journal of Visualized Experiments. Liang, C., H. W. Read, et al.

Quantitative colorimetric measurement of cellulose degradation under microbial culture conditions
2012. Applied Microbiology and Biotechnology . Haft, R., J. Gardner, et al.

Deep EST profiling of developing fenugreek endosperm to investigate galactomannan biosynthesis and its regulation
2012. Plant Mol Biol. Wang, Y., A. Alonso, et al.

Biochemical and Thermochemical Conversion of Switchgrass to Biofuels
2012. Springer London. Balan, V., S. Kumar, et al.

RNA-Seq Analysis of Developing Nasturtium Seeds (Tropaeolum majus): Identification and Characterization of an additional Galactosyltransferase Involved in Xyloglucan Biosynthesis
2012. Mol Plant.. Jensen, J. K., A. Schultink, et al.

Maize (Zea mays L.) genome diversity revealed by RNA-sequencing
2012. PLoS ONE. Hansey, Candice N.; Vaillancourt, B.; Sekhon, Rajandeep S.; de Leon, Natalia; Kaeppler, Shawn M.; Buell, C. Robin

Tissue-type-specific transcriptome analysis identifies developing xylem-specific promoters in poplar
2012. Plant Biotechnol J.. Ko, J. H., H. T. Kim, et al.

Complex physiology and compound stress responses during fermentation of alkali-pretreated corn stover hydrolysate by an Escherichia coli ethanologen
2012. Applied and Environmental Microbiology. Schwalbach, M. S., D. H. Keating, et al.

An integrated paradigm for cellulosic biorefineries: Utilization of lignocellulosic biomass as self-sufficient feedstocks for fuel, food precursos and saccharolytic enzyme production
2012. Energy & Environmental Science. Lau, M. W., B. D. Bals, et al.

Insights into metabolic efficiency from flux analysis
2012. Journal of Experimental Botany. Chen, X. and Y. Shachar-Hill

Metabolic cartography: experimental quantification of metabolic fluxes from isotopic labeling studies
2012. Journal of Experimental Botany. O'Grady, J.; Schwender, J.; Shachar-Hill, Yair; Morgan, JA

Conversion of hemicellulose to furfural and levulinic acid using biphasic reactors with alkylphenol solvents
2012. ChemSusChem. Gürbüz, Elif I.; Wettstein, Stephanie G.; Dumesic, James A.

Consolidated bioprocessing (CBP) of AFEX™-pretreated corn stover for ethanol production using Clostridium phytofermentans at a high solids loading
2012. Biotechnology and Bioengineering . Jin, M., C. Gunawan, et al.

Characterization, genetic variation, and combining ability of maize traits relevant to the production of cellulosic ethanol
2012. Crop Science. Lorenz, A. J.; Coors, J. G.; de Leon, N.; Wolfrum, E. J.; Hames, B. R.; Sluiter, A. D.; Weimer, P. J.

Hydroxycinnamate conjugates as potential monolignol replacements: In vitro lignification and cell wall studies with rosmarinic acid
2012. ChemSusChem. Tobimatsu, Yuki; Elumalai, Sasikumar; Grabber, John H.; Davidson, Christy L.; Pan, Xuejun; Ralph, John

Biofuels and biodiversity: the implications of energy sprawl
2012. Encyclopedia of Biodiversity. Robertson, B. A.; Doran, P.J.

Investment in Cellulosic Biofuel Refineries: Do Waivable Biofuel Mandates Matter?
2012. American Journal of Agricultural Economics. Miao, R.; Hennessy, D. A.; Babcock, B. A

Genetic and Functional Genomic Approaches for the Stufy of Plant Cell Wall Degredation in Celvibrio japonicus
2012. In press. Gardner, Jeffrey G.; Keating, David H.

Breeding Maize for a Bioeconomy: A Literature Survey Examining Harvest Index and Stover Yield and Their Relationship to Grain Yield
2012. Crop Science. Lorenz, A. J.; Gustafson, T. J.; Coors, J. G.; de Leon, N.

Comparative deep transcriptional profiling of four developing oilseeds
2012. The Plant Journal. Troncoso-Ponce, Manuel Kilaru, Aruna Cao, Xia Durrett, Timothy; Fan, Jilian; Jensen, Jacob; Thrower, Nick; Pauly, Markus; Wilkerson, Curtis; Ohlrogge, John

Natural Enemies and Insect Outbreaks in Agriculture: A Landscape Perspective
2012. Insect Outbreaks. Woltz, J.M.; Werling, B. P.; Landis, D. A.

Whole plant cell wall characterization using 2D-NMR
2012. Nature Protocols. Mansfield, Shawn D.; Kim, Hoon; Lu, Fachuang; Ralph, John

Chapter 4: The cytoskeleton and root growth behavior
2012. The Plant Cytoskeleton. Advances in Plant Biology 2. Vaughn, L.M.; Baldwin, K.L.; Jia, G.; Verdonk, J.C.; Strohm, A.K.; Masson, P.H.

Exploring the potential for Actinobacteria as defensive symbionts in fungus-growing termites
2012. Microbial Ecology. Visser, Anna A.; Nobre, Tânia M.; Currie, Cameron R.; Aanen, Duur K.; Poulsen, Michael

Mechanism of Proton Transfer in [FeFe]-Hydrogenase from Clostridium pasteurianum
2012. The Journal of Biological Chemistry. Cornish, Adam J.; Gärtner, Katrin; Yang, Hui; Peters, John W.; Hegg, Eric L.

Ecosystem Services and Bioenergy Landscapes
2012. Michigan State University. Werling, B. P.; Pennington, D.; Landis, D. A.

Lignification and lignin manipulations in conifers
2012. Elsevier. Wagner, Armin; Donaldson, Lloyd; Ralph, John

Effects on lignin structure of coumarate 3-hydroxylase downregulation in Poplar
2012. BioEnergy Research. Ralph, John; Akiyama, Takuya; Coleman, David C.; Mansfield, Shawn D.

Landscape moderation of biodiversity patterns and processes - eight hypotheses
2012. Biology Review. Teja Tscharntke, J.M. Tylianakis, T.A. Rand, R.K. Didham, L.Fahrig, P. Batáry, J. Bengtsson, Y. Clough, T.O. Crist, C.F. Dormann, R.M. Ewers, J. Fründ, R.D. Holt, A. Holzschuh, A.M. Klein, D. Kleijn, C Kremen, D.A. Landis, W Laurance, D Lindenmayer et al

Can Dispersed Biomass Processing Protect the Environment and Cover the Bottom Line for Biofuel?
2012. Michigan State University. Egbendewe-Mondzozo, Aklesso; Swinton, S. M.; Bals, B. D. ;Dale, B. E.

Effectiveness of weed management methods in establishment of switchgrass and a native species mixture for biofuels in Wisconsin
2012. Biomass and BioEnergy. Miesel, Jessica R.; Renz, Mark J.; Doll, Julie E.; Jackson, Randall D.

News and Views into the SNARE Complexity in Arabidopsis
2012. Frontiers in Plant Cell Biology. Sang-Jin Kim; Brandizzi, Federica

Soil carbon mapping using on-the-go near infrared spectroscopy, topography and aerial photographs
2012. Geoderma. Muñoz, Juan D.; Kravchenko, Alexandra

Maximizing reductant flow into microbial H2 production
2012. Ecology and Society. Dale, Virginia H.; Lowrance, Richard; Mulholland, Patrick; Robertson, G. Phillip

Importance of feedback loops between soil inorganic nitrogen and microbial communities in the heterotrophic soil respiration response to global warming
2012. Nature Publishing Group. Xu, Chonggang; Liang, Chao; Wullschleger, Stan; Wilson, Cathy; McDowell, Nathan

Quantitatively understanding reduced xylose fermentation performance in AFEXTM treated corn stover hydrolysate using Saccharomyces cerevisiae 424A (LNH-ST) and Escherichia coli KO11
2012. Bioresource Technology. Jin, M.; Balan, V. ;Gunawan, C.; Dale, B. E.

Simultaneous saccharification and co-fermentation (SSCF) of AFEXTM pretreated corn stover using commercial enzymes and Saccharomyces cerevisiae 424A(LNH-ST)
2012. Bioresource Technology . Jin, M., C. Gunawan, et al.

Isotope labelling of Rubisco subunits provides in vivo information on subcellular biosynthesis and exchange of amino acids between compartments
2012. Plant Cell Environ. Allen, D. K., R. W. Laclair, et al.

Semiautomated device for batch extraction of metabolites from tissue samples
2012. Analytical Chemistry. Ellinger, J. J., D. C. Miller, et al.

Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis
2012. Plant Mol Biol . Kim, W. C., J. H. Ko, et al.

Identification of a grass-specific enzyme that acylates monolignols with p-coumarate
2012. Journal of Biological Chemistry. Withers, Saunia; Lu, Fachuang; Zhu, Yimin; Ralph, John

A polymer of caffeyl alcohol in plant seeds
2012. Proceeding of the National Academy of Sciences USA. Chen, Fang; Tobimatsu, Yuki; Havkin-Frenkel, Daphna; Dixon, Richard A.; Ralph, John

Influence of variable species composition on the saccharification of AFEX™ pretreated biomass from unmanaged fields in comparison to corn stover
2012. Biomass and BioEnergy. Garlock, Rebecca J.; Bals, Bryan; Jasrotia, Poonam; Balan, Venkatesh; Dale, Bruce E.

Soil microbial communities under model biofuel cropping systems in southern Wisconsin, USA: Impact of crop species and soil properties
2012. Applied Soil Ecology. Liang, Chao; da Ederson, Jesus C.; Duncan, David S.; Jackson, Randall D.; Tiedje, James M.; Balser, Teri C.

Draft genome sequence of Streptomyces sp. strain Wigar10, isolated from a surface-sterilized garlic bulb
2012. Biotechnology and bioengineering. Youngquist, J. Tyler; Lennen, Rebecca M.; Ranatunga, Don R.; Bothfeld, William H.; Marner II, Wesley D.; Pfleger, Brian F.

The Evolutionary Innovation of Nutritional Symbioses in Leaf-Cutter Ants
2012. Insects. Aylward, Frank O;. Currie, Cameron R.; Suen, Garret

Kinetic modeling of free fatty acid production in Escherichia coli based on continuous cultivation of a plasmid free strain
2012. Biotechnology and Bioengineering . Youngquist, J. T., R. M. Lennen, et al.